Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040173.1

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Forward (+)

1260 .. 1764

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040173.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

atggccatcgaaattttcgaaaaaattgctactcgttcgcccagccacagcttgctcatggacgaagctcagaggcatctcttcaacgctggaatatgccggctttgccaaggagatgatgttgttgcaatggacatgtcagatatgcgatacgtggacatgtacccaattttcctctacatgggagactgggagtgcaaattcttgacctacattaaagctccactagttcaacgagacgttgccaagttcagtgacgcggtgaagacattaccacggctcgattcatggacgactaacttgctttcgagagtagaggagaaactgaaagcccccaagtctgtgagaacgcgatggtcgacgaataaggtcgcagacttgacacccgccagctccaccactacttttggtgacggaggaaagcaaagagagatgtgcactgacttgcaaagatcacagacaatcgtaatgcgcaggtcaccgccgaccggaagtaaactcttgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

168

Amino Acids

19.12

Weight (kDa)

8.93

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	473
Acc36I	ACCTGC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	2 cut(s)	260, 352
AciI	CCGC	3 cut(s)	260, 387, 482
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	12, 200
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	181, 488
AflIII	ACRYGT	2 cut(s)	135, 159
AgsI	TTSAA	2 cut(s)	85, 233
AhlI	ACTAGT	1 cut(s)	226
AluBI	AGCT	4 cut(s)	51, 68, 221, 393
AluI	AGCT	4 cut(s)	51, 68, 221, 393
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	2 cut(s)	180, 231
Alw44I	GTGCAC	1 cut(s)	436
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	436
ApoI	RAATTY	2 cut(s)	12, 200
AspLEI	GCGC	1 cut(s)	474
AsuHPI	GGTGA	3 cut(s)	274, 422, 471
AsuII	TTCGAA	1 cut(s)	18
BaeGI	GKGCMC	1 cut(s)	440
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	440
BccI	CCATC	2 cut(s)	14, 348
BceAI	ACGGC	1 cut(s)	293
BcgI	CGANNNNNNTGC	4 cut(s)	8, 42, 283, 317
BcoDI	GTCTC	2 cut(s)	180, 231
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	465
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	18
BsaAI	YACGTR	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	109, 275
BsaWI	WCCGGW	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 488
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	109, 275
BseLI	CCNNNNNNNGG	2 cut(s)	181, 488
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	440
BseYI	CCCAGC	1 cut(s)	41
Bsh1236I	CGCG	2 cut(s)	260, 352
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	100, 489
BslI	CCNNNNNNNGG	2 cut(s)	181, 488
BsmAI	GTCTC	2 cut(s)	180, 231
BsmBI	CGTCTC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	452
BspACI	CCGC	3 cut(s)	260, 387, 482
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	2 cut(s)	260, 352
BspMI	ACCTGC	1 cut(s)	465
BspT104I	TTCGAA	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	109, 275
BssMI	GATC	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	53, 101, 391
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	275
BstEII	GGTNACC	1 cut(s)	477
BstFNI	CGCG	2 cut(s)	260, 352
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	1 cut(s)	455
BstMAI	GTCTC	2 cut(s)	180, 231
BstMBI	GATC	1 cut(s)	452
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	2 cut(s)	139, 163
BstPI	GGTNACC	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	440
BstUI	CGCG	2 cut(s)	260, 352
BstV2I	GAAGAC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	275
BtgZI	GCGATG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	259, 438
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	53, 101, 391
CfoI	GCGC	1 cut(s)	474
Cfr10I	RCCGGY	1 cut(s)	99
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	5 cut(s)	58, 136, 160, 181, 288
CviJI	RGCY	9 cut(s)	5, 45, 51, 68, 103, 221, 280, 332, 393
CviKI_1	RGCY	9 cut(s)	5, 45, 51, 68, 103, 221, 280, 332, 393
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	454
DpnII	GATC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	477
EcoO65I	GGTNACC	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	5 cut(s)	61, 139, 163, 184, 291
FaiI	YATR	7 cut(s)	59, 97, 137, 146, 161, 182, 289
FatI	CATG	5 cut(s)	57, 135, 159, 180, 287
FauI	CCCGC	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	359
FspBI	CTAG	1 cut(s)	227
FspI	TGCGCA	1 cut(s)	473
GlaI	GCGC	1 cut(s)	473
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	100, 489
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	5 cut(s)	61, 139, 163, 184, 291
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	2 cut(s)	100, 489
HphI	GGTGA	3 cut(s)	274, 422, 471
Hpy166II	GTNNAC	4 cut(s)	157, 360, 438, 497
Hpy188I	TCNGA	2 cut(s)	72, 142
Hpy188III	TCNNGA	2 cut(s)	205, 309
Hpy8I	GTNNAC	4 cut(s)	157, 360, 438, 497
Hpy99I	CGWCG	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	153, 240
HpyCH4V	TGCA	4 cut(s)	128, 198, 438, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	153, 240
Hsp92II	CATG	5 cut(s)	61, 139, 163, 184, 291
HspAI	GCGC	1 cut(s)	472
KroI	GCCGGC	1 cut(s)	99
KroNI	GCCGGC	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	452
LmnI	GCTCC	2 cut(s)	226, 398
LpnPI	CCDG	6 cut(s)	55, 75, 113, 175, 403, 460
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	2 cut(s)	153, 240
MaeIII	GTNAC	3 cut(s)	254, 410, 477
MalI	GATC	1 cut(s)	454
MboI	GATC	1 cut(s)	452
MboII	GAAGA	2 cut(s)	73, 277
MhlI	GDGCHC	1 cut(s)	440
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	12, 24, 168, 200
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	66, 185, 310, 410
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	100, 489
MvnI	CGCG	2 cut(s)	260, 352
MwoI	GCNNNNNNNGC	1 cut(s)	105
NaeI	GCCGGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	452
NgoMIV	GCCGGC	1 cut(s)	99
NlaIII	CATG	5 cut(s)	61, 139, 163, 184, 291
NmuCI	GTSAC	3 cut(s)	254, 410, 477
NsbI	TGCGCA	1 cut(s)	473
NspI	RCATGY	2 cut(s)	139, 163
NspV	TTCGAA	1 cut(s)	18
PciI	ACATGT	2 cut(s)	135, 159
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 356
PdiI	GCCGGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	154
PscI	ACATGT	2 cut(s)	135, 159
PspEI	GGTNACC	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SalI	GTCGAC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	9 cut(s)	53, 70, 156, 212, 223, 243, 372, 395, 479
SfaNI	GCATC	1 cut(s)	85
SfuI	TTCGAA	1 cut(s)	18
SpeI	ACTAGT	1 cut(s)	226
Sse9I	AATT	4 cut(s)	12, 24, 168, 200
SsiI	CCGC	3 cut(s)	260, 387, 482
SspMI	CTAG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	109
TaiI	ACGT	2 cut(s)	156, 243
TaqI	TCGA	5 cut(s)	9, 18, 282, 308, 359
TasI	AATT	4 cut(s)	12, 24, 168, 200
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	2 cut(s)	259, 445
TseFI	GTSAC	3 cut(s)	254, 410, 477
Tsp45I	GTSAC	3 cut(s)	254, 410, 477
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	2 cut(s)	259, 445
VneI	GTGCAC	1 cut(s)	436
XapI	RAATTY	2 cut(s)	12, 200
XceI	RCATGY	2 cut(s)	139, 163
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.