Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Forward (+)

13914248 .. 13914961

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCATCGAAATTTTTGAAAAAATTGCTGCTTGTTCGCTCAGCCACAGCTTGCTCATGGACGAAGCTCAGAGGCATCTCTTCAAGCTGGAATATGCCGACTCTGCCAAGGAGATGTTGTTGCAATGGACATACATTACCACGGCTCGATTCATGGACGACTACCTTGCTTTCGAGAGTAGAGGAGAAACTGAATTGAAAGCCCCCAAGTCCGTGAGAACGCGCTGGTCGACGAACAAGTTCGCTGACTGGACACCCGCCAGCTCCACCACTACGTTTGGTGACGGAGGAAAGCAAAGGGAGACGTACGTGTGCACTGGCTTGCAAAGATCACAGACAACCGTAATGCGCACGTCACCGCCGACCGGAAGTAAACTCTTGCGGTCTAGTTCAATCAAAGAGGATATCAGAAAAATGAGAGGGAGGCCGGTGAATTGGATCCTCCAAACGGGACTGACCTTCAAAAGAAGCCTCTCAATGGCCAGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.67

Weight (kDa)

9.84

Isoelectric Point (pI)

61.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	230
AccII	CGCG	1 cut(s)	223
AciI	CCGC	3 cut(s)	258, 359, 382
AclWI	GGATC	2 cut(s)	433, 446
AcoI	YGGCCR	2 cut(s)	3, 480
AcsI	RAATTY	1 cut(s)	12
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	365, 448, 478
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	5 cut(s)	20, 85, 199, 393, 463
AjiI	CACGTC	1 cut(s)	354
AluBI	AGCT	4 cut(s)	51, 68, 88, 264
AluI	AGCT	4 cut(s)	51, 68, 88, 264
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	296
Alw44I	GTGCAC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	433, 446
AoxI	GGCC	3 cut(s)	3, 425, 480
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	225, 351
AsuHPI	GGTGA	3 cut(s)	293, 348, 442
BaeGI	GKGCMC	1 cut(s)	317
BalI	TGGCCA	2 cut(s)	5, 482
BamHI	GGATCC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	31
BmgBI	CACGTC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	440
BmsI	GCATC	1 cut(s)	85
Bpu1102I	GCTNAGC	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	108, 141
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 448, 478
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	2 cut(s)	254, 322
Bse3DI	GCAATG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	108, 141
BseLI	CCNNNNNNNGG	3 cut(s)	365, 448, 478
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	55, 83
BseNI	ACTGG	2 cut(s)	254, 322
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	5, 427, 482
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	366, 428
BsiWI	CGTACG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	3 cut(s)	365, 448, 478
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	465
BsnI	GGCC	3 cut(s)	5, 427, 482
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	329, 438
Bsp1720I	GCTNAGC	1 cut(s)	41
BspACI	CCGC	3 cut(s)	258, 359, 382
BspANI	GGCC	3 cut(s)	5, 427, 482
BspCNI	CTCAG	2 cut(s)	54, 82
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	433, 446
BsrDI	GCAATG	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	254, 322
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	108, 141
BssMI	GATC	2 cut(s)	329, 438
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	343, 489
Bst6I	CTCTTC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	53, 262, 323
BstDEI	CTNAG	2 cut(s)	41, 69
BstDSI	CCRYGG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	223
BstHHI	GCGC	2 cut(s)	225, 351
BstKTI	GATC	2 cut(s)	332, 441
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	329, 438
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	5, 427, 482
BtgI	CCRYGG	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	3 cut(s)	53, 262, 323
CfoI	GCGC	2 cut(s)	225, 351
Cfr10I	RCCGGY	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	2 cut(s)	58, 154
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	41, 69
DpnI	GATC	2 cut(s)	331, 440
DpnII	GATC	2 cut(s)	329, 438
EaeI	YGGCCR	2 cut(s)	3, 480
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	2 cut(s)	61, 157
FaiI	YATR	4 cut(s)	59, 96, 133, 155
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	2 cut(s)	57, 153
FauI	CCCGC	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
FspAI	RTGCGCAY	1 cut(s)	350
FspBI	CTAG	1 cut(s)	387
FspI	TGCGCA	1 cut(s)	350
GlaI	GCGC	2 cut(s)	224, 350
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	3 cut(s)	5, 427, 482
HapII	CCGG	2 cut(s)	366, 428
HhaI	GCGC	2 cut(s)	225, 351
Hin1II	CATG	2 cut(s)	61, 157
Hin6I	GCGC	2 cut(s)	223, 349
HinP1I	GCGC	2 cut(s)	223, 349
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	101, 150
HpaII	CCGG	2 cut(s)	366, 428
HphI	GGTGA	3 cut(s)	293, 348, 442
Hpy166II	GTNNAC	3 cut(s)	231, 315, 374
Hpy188I	TCNGA	2 cut(s)	72, 410
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	3 cut(s)	231, 315, 374
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	2 cut(s)	343, 489
HpyCH4IV	ACGT	4 cut(s)	275, 305, 309, 353
HpyCH4V	TGCA	3 cut(s)	124, 315, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	41, 69
HpySE526I	ACGT	4 cut(s)	275, 305, 309, 353
Hsp92II	CATG	2 cut(s)	61, 157
HspAI	GCGC	2 cut(s)	223, 349
Kzo9I	GATC	2 cut(s)	329, 438
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	7 cut(s)	74, 211, 235, 274, 303, 379, 441
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	4 cut(s)	275, 305, 309, 353
MaeIII	GTNAC	2 cut(s)	281, 354
MalI	GATC	2 cut(s)	331, 440
MboI	GATC	2 cut(s)	329, 438
MboII	GAAGA	1 cut(s)	73
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	317
MlsI	TGGCCA	2 cut(s)	5, 482
MluCI	AATT	4 cut(s)	12, 24, 194, 433
MluNI	TGGCCA	2 cut(s)	5, 482
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	8 cut(s)	66, 176, 281, 394, 413, 417, 452, 482
Mox20I	TGGCCA	2 cut(s)	5, 482
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	2 cut(s)	5, 482
Msp20I	TGGCCA	2 cut(s)	5, 482
MspI	CCGG	2 cut(s)	366, 428
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	2 cut(s)	329, 438
NlaIII	CATG	2 cut(s)	61, 157
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	2 cut(s)	281, 354
NsbI	TGCGCA	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	2 cut(s)	227, 359
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	150
Pfl23II	CGTACG	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	310
PspLI	CGTACG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	438
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SalI	GTCGAC	1 cut(s)	229
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	329, 438
SchI	GAGTC	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	1 cut(s)	85
Sse9I	AATT	4 cut(s)	12, 24, 194, 433
SsiI	CCGC	3 cut(s)	258, 359, 382
SspMI	CTAG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	343, 489
TaiI	ACGT	4 cut(s)	278, 308, 312, 356
TaqI	TCGA	4 cut(s)	9, 148, 174, 230
TasI	AATT	4 cut(s)	12, 24, 194, 433
TfiI	GAWTC	1 cut(s)	150
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	2 cut(s)	281, 354
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	281, 354
TspDTI	ATGAA	1 cut(s)	142
TspGWI	ACGGA	2 cut(s)	202, 300
TspRI	CASTG	1 cut(s)	322
VneI	GTGCAC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.