Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001792.1

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Forward (+)

142479 .. 142886

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001792.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgggagccattgaacatattgttagagtgttgaaggaatttgaaaagaaagcgaagaagaagctcgttggatggagatttttcaattctgaagaatccaataaacacaaacaggccgctgaactcttccatgaagctgcccatcattacaaactcaccagagcctgggataaagctgggtacacattggcaaagttggcctattgtcatttgaagactgatagcaaagaacaagccgcaaaagcttttcttgatgctgcggagtgtcacagtaaaacgtgccttgcttacttagacaagggagcaaatctcctttgtgtagctggatcacttgataaagctggggtatgttatgaagaaattgcgggtctgaggagtcgttctatggaggtctttgataatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

135

Amino Acids

15.21

Weight (kDa)

8.76

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AciI	CCGC	4 cut(s)	117, 237, 260, 365
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	5 cut(s)	14, 34, 44, 85, 214
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	6 cut(s)	64, 137, 176, 245, 323, 341
AluI	AGCT	6 cut(s)	64, 137, 176, 245, 323, 341
AlwI	GGATC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	165
AoxI	GGCC	2 cut(s)	114, 198
ApeKI	GCWGC	2 cut(s)	137, 257
ApoI	RAATTY	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	124, 244
BccI	CCATC	2 cut(s)	66, 150
BciT130I	CCWGG	1 cut(s)	166
BisI	GCNGC	4 cut(s)	117, 138, 237, 258
BlsI	GCNGC	4 cut(s)	118, 139, 238, 259
Bme1390I	CCNGG	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	362
BseRI	GAGGAG	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	124, 244
BseYI	CCCAGC	2 cut(s)	176, 341
BshFI	GGCC	2 cut(s)	116, 200
BslI	CCNNNNNNNGG	1 cut(s)	165
BsnI	GGCC	2 cut(s)	116, 200
Bsp143I	GATC	1 cut(s)	326
BspACI	CCGC	4 cut(s)	117, 237, 260, 365
BspANI	GGCC	2 cut(s)	116, 200
BspCNI	CTCAG	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	292, 371
BstF5I	GGATG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 242
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	124, 244
BstV2I	GAAGAC	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	116, 200
BtsCI	GGATG	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	1 cut(s)	131
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	292, 371
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	134
FaiI	YATR	5 cut(s)	18, 132, 349, 354, 386
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	1 cut(s)	130
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	4 cut(s)	117, 138, 237, 258
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	4 cut(s)	117, 138, 237, 258
GluI	GCNGC	4 cut(s)	117, 138, 237, 258
GsaI	CCCAGC	2 cut(s)	180, 345
HaeIII	GGCC	2 cut(s)	116, 200
Hin1II	CATG	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	2 cut(s)	95, 376
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	91, 372
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 242
HpyF3I	CTNAG	2 cut(s)	292, 371
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	2 cut(s)	5, 302
LpnPI	CCDG	7 cut(s)	98, 151, 162, 172, 178, 309, 327
Lsp1109I	GCAGC	2 cut(s)	124, 244
LweI	GCATC	1 cut(s)	244
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	6 cut(s)	67, 70, 104, 118, 226, 368
MluCI	AATT	3 cut(s)	38, 85, 360
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	2 cut(s)	366, 382
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	197, 242
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	4 cut(s)	118, 139, 238, 259
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	2 cut(s)	176, 341
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	165
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SatI	GCNGC	4 cut(s)	117, 138, 237, 258
Sau3AI	GATC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	8 cut(s)	66, 139, 178, 247, 281, 325, 343, 393
SfaNI	GCATC	1 cut(s)	244
Sse9I	AATT	3 cut(s)	38, 85, 360
SsiI	CCGC	4 cut(s)	117, 237, 260, 365
SspI	AATATT	1 cut(s)	403
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	281
TasI	AATT	3 cut(s)	38, 85, 360
TauI	GCSGC	2 cut(s)	119, 239
TfiI	GAWTC	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	2 cut(s)	137, 257
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	147, 369
Van91I	CCANNNNNTGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.