Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Reverse (-)

1647578 .. 1647955

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG020700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCTGAGCAGCGTACATCAAGTAAGCACACTGTAAATCCAAGATTAGTTATAACGATTACGAAGCCACGTACAAAGGCTTATGTTGAAGCTGCACGATCCTGCAAGAAAGAGGCCATTGCTTGCTTAGAGCAGGCAGCAACTTCCTTTTGTGAAATGGGAATGACTGGTTCTGCTGCTCAACTCTATCAGGAAATTGCAGAAATGTATGAATCTGAACGTGACTTTAAGAAGGCAATGGAGTTCTTTGGAAAGGCAGCTGAATTGTTTGGAAATTCGAAGTCTGGAGATCACTTCAAGGAGAGAGCTGCTCAATGTGGCAATCGGATTAATTATGGAACGATATCCATCCCGATTATATTAGTTTTGTTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000278 GO:0000281 GO:0000910 GO:0001505 GO:0001654 GO:0001671 GO:0001745 GO:0002009 GO:0002090 GO:0002165 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006836 GO:0006886 GO:0006887 GO:0006888 GO:0006890 GO:0006891 GO:0006897 GO:0006900 GO:0006901 GO:0006903 GO:0006906 GO:0006914 GO:0006996 GO:0007033 GO:0007049 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0007274 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009987 GO:0010646 GO:0010807 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016079 GO:0016082 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019222 GO:0019898 GO:0019905 GO:0022008 GO:0022402 GO:0022411 GO:0022607 GO:0023051 GO:0023052 GO:0023061 GO:0030054 GO:0030100 GO:0030154 GO:0030182 GO:0030234 GO:0030424 GO:0031090 GO:0031201 GO:0031323 GO:0031410 GO:0031629 GO:0031982 GO:0032386 GO:0032501 GO:0032502 GO:0032781 GO:0032879 GO:0032940 GO:0032984 GO:0032991 GO:0033036 GO:0033267 GO:0034214 GO:0034613 GO:0034622 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035239 GO:0035249 GO:0035295 GO:0035494 GO:0036465 GO:0040007 GO:0042144 GO:0042886 GO:0042995 GO:0043005 GO:0043085 GO:0043195 GO:0043209 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043462 GO:0043624 GO:0043679 GO:0043933 GO:0044085 GO:0044087 GO:0044093 GO:0044237 GO:0044248 GO:0044306 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0044877 GO:0045026 GO:0045055 GO:0045176 GO:0045184 GO:0045202 GO:0046903 GO:0046907 GO:0046928 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048259 GO:0048280 GO:0048284 GO:0048488 GO:0048489 GO:0048513 GO:0048526 GO:0048563 GO:0048569 GO:0048589 GO:0048592 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050804 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051336 GO:0051345 GO:0051588 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0055044 GO:0060255 GO:0060322 GO:0060341 GO:0060429 GO:0060560 GO:0060562 GO:0060589 GO:0060590 GO:0060627 GO:0061024 GO:0061025 GO:0061640 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070044 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090114 GO:0090174 GO:0090596 GO:0097458 GO:0097479 GO:0097480 GO:0097576 GO:0097708 GO:0098588 GO:0098657 GO:0098693 GO:0098772 GO:0098793 GO:0098796 GO:0098805 GO:0098916 GO:0099003 GO:0099177 GO:0099500 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:0120025 GO:0120038 GO:0140029 GO:0150034 GO:1902803 GO:1903047 GO:1903305 GO:1903530 GO:2000300

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

125

Amino Acids

13.97

Weight (kDa)

8.7

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	25 - 95	2.3e-14	Soluble NSF attachment protein, SNAP
DHR-2_Lobe_A	PF06920	36 - 91	4.1e-06	DHR-2, Lobe A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	2 cut(s)	16, 73
AgsI	TTSAA	2 cut(s)	89, 298
AluBI	AGCT	3 cut(s)	92, 260, 308
AluI	AGCT	3 cut(s)	92, 260, 308
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	6 cut(s)	10, 92, 137, 176, 257, 308
ApoI	RAATTY	1 cut(s)	274
AseI	ATTAAT	1 cut(s)	330
AsuII	TTCGAA	1 cut(s)	278
BbvI	GCAGC	6 cut(s)	22, 79, 149, 163, 269, 295
BccI	CCATC	1 cut(s)	356
BisI	GCNGC	6 cut(s)	11, 93, 138, 177, 258, 309
BlsI	GCNGC	6 cut(s)	12, 94, 139, 178, 259, 310
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpmI	CTGGAG	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	278
BsaAI	YACGTR	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	2 cut(s)	117, 243
Bse8I	GATNNNNATC	1 cut(s)	347
BseGI	GGATG	1 cut(s)	348
BseJI	GATNNNNATC	1 cut(s)	347
BseMI	GCAATG	2 cut(s)	117, 243
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	6 cut(s)	22, 79, 149, 163, 269, 295
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	98, 289
BspANI	GGCC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	93
BspT104I	TTCGAA	1 cut(s)	278
BsrDI	GCAATG	2 cut(s)	117, 243
BsrI	ACTGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	98, 289
Bst4CI	ACNGT	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	124, 135
BstDEI	CTNAG	2 cut(s)	6, 127
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	2 cut(s)	101, 292
BstMBI	GATC	2 cut(s)	98, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	6 cut(s)	22, 79, 149, 163, 269, 295
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	124, 135
Csp6I	GTAC	2 cut(s)	15, 72
CviJI	RGCY	6 cut(s)	67, 80, 92, 116, 260, 308
CviKI_1	RGCY	6 cut(s)	67, 80, 92, 116, 260, 308
CviQI	GTAC	2 cut(s)	15, 72
DdeI	CTNAG	2 cut(s)	6, 127
DpnI	GATC	2 cut(s)	100, 291
DpnII	GATC	2 cut(s)	98, 289
Eco32I	GATATC	1 cut(s)	345
EcoRV	GATATC	1 cut(s)	345
FaiI	YATR	6 cut(s)	53, 84, 210, 336, 359, 374
Fnu4HI	GCNGC	6 cut(s)	11, 93, 138, 177, 258, 309
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	6 cut(s)	11, 93, 138, 177, 258, 309
GluI	GCNGC	6 cut(s)	11, 93, 138, 177, 258, 309
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	116
HinfI	GANTC	1 cut(s)	212
Hpy188I	TCNGA	2 cut(s)	217, 327
Hpy188III	TCNNGA	3 cut(s)	191, 285, 352
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	2 cut(s)	70, 220
HpyCH4V	TGCA	3 cut(s)	95, 105, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	6, 127
HpySE526I	ACGT	2 cut(s)	70, 220
Kzo9I	GATC	2 cut(s)	98, 289
LpnPI	CCDG	6 cut(s)	18, 115, 119, 153, 176, 270
Lsp1109I	GCAGC	6 cut(s)	22, 79, 149, 163, 269, 295
MaeII	ACGT	2 cut(s)	70, 220
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	100, 291
MboI	GATC	2 cut(s)	98, 289
MluCI	AATT	4 cut(s)	195, 263, 274, 331
MnlI	CCTC	1 cut(s)	106
MseI	TTAA	2 cut(s)	228, 330
MspA1I	CMGCKG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	98, 289
NmuCI	GTSAC	1 cut(s)	221
NspV	TTCGAA	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	6 cut(s)	12, 94, 139, 178, 259, 310
Ppu21I	YACGTR	1 cut(s)	71
PshBI	ATTAAT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	16, 73
RsaNI	GTAC	2 cut(s)	15, 72
SaqAI	TTAA	2 cut(s)	228, 330
SatI	GCNGC	6 cut(s)	11, 93, 138, 177, 258, 309
Sau3AI	GATC	2 cut(s)	98, 289
SetI	ASST	5 cut(s)	73, 94, 223, 262, 310
SfuI	TTCGAA	1 cut(s)	278
Sse9I	AATT	4 cut(s)	195, 263, 274, 331
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	2 cut(s)	73, 223
TaqI	TCGA	1 cut(s)	278
TasI	AATT	4 cut(s)	195, 263, 274, 331
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	228, 330
Tru9I	TTAA	2 cut(s)	228, 330
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	6 cut(s)	10, 92, 137, 176, 257, 308
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	330
XapI	RAATTY	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.