Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Forward (+)

13836468 .. 13836947

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAACTTGTCAGTTATGCGATACGTGGACATGTACCCAAATTTTCCTGATACATGGGAGTGCAAATTCTTGACCTACATTATAGCTCCACTAGTTCAACGAGACGTTGCCAAGTTCAGTGACGCGGTGAAGACATTACCACGGCCCGATTCATGGACGACTAACTTGCTTTCGAGAGTAGAGGAGAAACTGAAAGCCCCCAAGTCCGTGAGAACGAGATGGTCGACGAACAAGGTCGCAGACTTGACACCCGCCAGCTCCACCACTTCGTTTGGTGACGGAGGAAAGCAAAGAGAGATGTGCACTGACTTGCAAAGATCACAGACAACCGTAATGCGCAGGTCACCGCCGGCCGGAAGTAAACTCTTGCGGTCTAGTTCAATCAAAGAAGATATCAGAAAAATGGGAGGGAGGCCGGTGAATTGGATCCTCCAAACGGGACTGACCTTCAAAAGAAGCCTCTCAATGGCCAGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

159

Amino Acids

18.12

Weight (kDa)

10.39

Isoelectric Point (pI)

65.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	4 - 64	1.3e-07	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	224
AccII	CGCG	1 cut(s)	125
AciI	CCGC	4 cut(s)	125, 252, 347, 370
AclWI	GGATC	2 cut(s)	421, 434
AcoI	YGGCCR	2 cut(s)	351, 468
AcsI	RAATTY	2 cut(s)	40, 65
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	4 cut(s)	153, 353, 436, 466
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	98, 381, 451
AhlI	ACTAGT	1 cut(s)	91
AluBI	AGCT	2 cut(s)	86, 258
AluI	AGCT	2 cut(s)	86, 258
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	421, 434
AoxI	GGCC	4 cut(s)	143, 351, 413, 468
ApaLI	GTGCAC	1 cut(s)	301
ApoI	RAATTY	2 cut(s)	40, 65
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	4 cut(s)	139, 287, 336, 430
BaeGI	GKGCMC	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	470
BamHI	GGATCC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	305
BccI	CCATC	1 cut(s)	213
BceAI	ACGGC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BcoDI	GTCTC	1 cut(s)	96
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	2 cut(s)	92, 375
BfuAI	ACCTGC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 353, 436, 466
Bse118I	RCCGGY	2 cut(s)	349, 415
BseDI	CCNNGG	1 cut(s)	140
BseLI	CCNNNNNNNGG	4 cut(s)	153, 353, 436, 466
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	305
BseX3I	CGGCCG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	4 cut(s)	145, 353, 415, 470
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	350, 354, 416
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	4 cut(s)	153, 353, 436, 466
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	4 cut(s)	145, 353, 415, 470
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	317, 426
BspACI	CCGC	4 cut(s)	125, 252, 347, 370
BspANI	GGCC	4 cut(s)	145, 353, 415, 470
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	428
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	2 cut(s)	421, 434
BsrFI	RCCGGY	2 cut(s)	349, 415
BssAI	RCCGGY	2 cut(s)	349, 415
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	2 cut(s)	317, 426
Bst4CI	ACNGT	2 cut(s)	331, 477
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	256, 351
BstDSI	CCRYGG	1 cut(s)	140
BstEII	GGTNACC	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	320, 429
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	2 cut(s)	317, 426
BstMCI	CGRYCG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	34
BstPI	GGTNACC	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	305
BstUI	CGCG	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BstZI	CGGCCG	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	145, 353, 415, 470
BtgI	CCRYGG	1 cut(s)	140
BtsIMutI	CAGTG	2 cut(s)	124, 303
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	256, 351
CfoI	GCGC	1 cut(s)	339
Cfr10I	RCCGGY	2 cut(s)	349, 415
Cfr13I	GGNCC	1 cut(s)	144
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	3 cut(s)	31, 54, 153
CviJI	RGCY	8 cut(s)	86, 145, 197, 258, 353, 415, 459, 470
CviKI_1	RGCY	8 cut(s)	86, 145, 197, 258, 353, 415, 459, 470
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	2 cut(s)	319, 428
DpnII	GATC	2 cut(s)	317, 426
EaeI	YGGCCR	2 cut(s)	351, 468
EagI	CGGCCG	1 cut(s)	351
EclXI	CGGCCG	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	394
Eco52I	CGGCCG	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	342
EcoO65I	GGTNACC	1 cut(s)	342
EcoRV	GATATC	1 cut(s)	394
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	3 cut(s)	34, 57, 156
FaiI	YATR	5 cut(s)	17, 32, 55, 83, 154
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	3 cut(s)	30, 53, 152
FauI	CCCGC	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	224
FspBI	CTAG	2 cut(s)	92, 375
FspI	TGCGCA	1 cut(s)	338
GlaI	GCGC	1 cut(s)	338
HaeIII	GGCC	4 cut(s)	145, 353, 415, 470
HapII	CCGG	3 cut(s)	350, 354, 416
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	34, 57, 156
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	3 cut(s)	350, 354, 416
HphI	GGTGA	4 cut(s)	139, 287, 336, 430
Hpy166II	GTNNAC	4 cut(s)	28, 225, 303, 362
Hpy188I	TCNGA	1 cut(s)	398
Hpy188III	TCNNGA	3 cut(s)	47, 70, 174
Hpy8I	GTNNAC	4 cut(s)	28, 225, 303, 362
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	2 cut(s)	331, 477
HpyCH4IV	ACGT	2 cut(s)	24, 105
HpyCH4V	TGCA	3 cut(s)	63, 303, 313
HpySE526I	ACGT	2 cut(s)	24, 105
Hsp92II	CATG	3 cut(s)	34, 57, 156
HspAI	GCGC	1 cut(s)	337
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	317, 426
LmnI	GCTCC	2 cut(s)	91, 263
LpnPI	CCDG	6 cut(s)	60, 268, 325, 363, 367, 429
MaeI	CTAG	2 cut(s)	92, 375
MaeII	ACGT	2 cut(s)	24, 105
MaeIII	GTNAC	3 cut(s)	119, 275, 342
MalI	GATC	2 cut(s)	319, 428
MboI	GATC	2 cut(s)	317, 426
MboII	GAAGA	2 cut(s)	142, 401
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	305
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	3 cut(s)	40, 65, 421
MluNI	TGGCCA	1 cut(s)	470
MnlI	CCTC	6 cut(s)	175, 275, 401, 405, 440, 470
Mox20I	TGGCCA	1 cut(s)	470
MroNI	GCCGGC	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	58
Msp20I	TGGCCA	1 cut(s)	470
MspI	CCGG	3 cut(s)	350, 354, 416
MvnI	CGCG	1 cut(s)	125
NaeI	GCCGGC	1 cut(s)	351
NdeII	GATC	2 cut(s)	317, 426
NgoMIV	GCCGGC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	34, 57, 156
NlaIV	GGNNCC	1 cut(s)	428
NmuCI	GTSAC	3 cut(s)	119, 275, 342
NsbI	TGCGCA	1 cut(s)	338
NspI	RCATGY	1 cut(s)	34
PciI	ACATGT	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	25
PscI	ACATGT	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	426
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	58
SalI	GTCGAC	1 cut(s)	223
Sau3AI	GATC	2 cut(s)	317, 426
Sau96I	GGNCC	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	8 cut(s)	27, 77, 88, 108, 237, 260, 344, 449
SmiMI	CAYNNNNRTG	1 cut(s)	58
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	3 cut(s)	40, 65, 421
SsiI	CCGC	4 cut(s)	125, 252, 347, 370
SspMI	CTAG	2 cut(s)	92, 375
TaaI	ACNGT	2 cut(s)	331, 477
TaiI	ACGT	2 cut(s)	27, 108
TaqI	TCGA	2 cut(s)	173, 224
TasI	AATT	3 cut(s)	40, 65, 421
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	2 cut(s)	124, 310
TseFI	GTSAC	3 cut(s)	119, 275, 342
Tsp45I	GTSAC	3 cut(s)	119, 275, 342
TspDTI	ATGAA	2 cut(s)	17, 141
TspGWI	ACGGA	2 cut(s)	196, 294
TspRI	CASTG	2 cut(s)	124, 310
VneI	GTGCAC	1 cut(s)	301
XapI	RAATTY	2 cut(s)	40, 65
XceI	RCATGY	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	224
XspI	CTAG	2 cut(s)	92, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.