Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Reverse (-)

58718315 .. 58719050

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG357200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTGCCAAACTCTTGGATCAAGCTGCCAACTCTCTTACAAACTCGCCAAATCCTGACCAAAACCAAACTTGAAGCCGCTGCCACAGCTTTTGTTGATGCTGCACATTGCTACGATATAATATCTGTTGATGAGGCCATTGATTGTCTAGAGCAAGGAGTCGATTACCTCTGTGAAATCGGAAGGCTTAACCGGGCTACAACTTGCTATGAGAAAGCTACACAACTACACAAGGAAATTGCGGAGCTATATGAATCCGAAAAGAACATTGTGAACGCTGCAACATATTATCAGAAAGCGGCACAACTATATTATAAGGAAATTGTGGAGCGACATGAATCCGAAAAGAACATTGAGAAGGCTATGCATTTCTTCGAAAAGGCAGCCGAGCTATTCCAAAACAAAGAACTAACAATCTCTGCCAACCAGTGTTATCAAAAAGCTGCTCAGCTTGCTGCACAGATTGAGCAATATTCCATGGCCATCGAAATTTTCGAAAAAATTGCTACTCGTTCGCTCAGCCACAGCTTGCTCATGGACGAAGCTCAGAGGCATCTCTTCAACGCTGGAATATGCCGGCTCTGCCAAGGAGATGATGTTGTTGCAATGGACATGTCAGTTATGCGATACGTGGACATGTACCCAAATTTTCCTGATACATGGGAGACTGGGAGTGCAAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

228

Amino Acids

26.05

Weight (kDa)

5.03

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	25 - 107	6.5e-15	Soluble NSF attachment protein, SNAP
SNAP	PF14938	105 - 223	1.6e-30	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AciI	CCGC	3 cut(s)	78, 242, 299
AclWI	GGATC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	3 cut(s)	489, 646, 679
AfaI	GTAC	1 cut(s)	641
AflIII	ACRYGT	2 cut(s)	612, 636
AgsI	TTSAA	2 cut(s)	74, 562
AluBI	AGCT	9 cut(s)	25, 89, 218, 247, 391, 443, 451, 528, 545
AluI	AGCT	9 cut(s)	25, 89, 218, 247, 391, 443, 451, 528, 545
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	2 cut(s)	135, 480
ApeKI	GCWGC	7 cut(s)	25, 80, 101, 278, 383, 443, 455
ApoI	RAATTY	3 cut(s)	489, 646, 679
AsuC2I	CCSGG	1 cut(s)	194
AsuII	TTCGAA	2 cut(s)	375, 495
BalI	TGGCCA	1 cut(s)	482
BbvI	GCAGC	7 cut(s)	12, 67, 88, 265, 395, 430, 442
BccI	CCATC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	9 cut(s)	26, 78, 81, 102, 279, 300, 384, 444, 456
BlpI	GCTNAGC	2 cut(s)	447, 518
BlsI	GCNGC	9 cut(s)	27, 79, 82, 103, 280, 301, 385, 445, 457
Bme1390I	CCNGG	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	194
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	2 cut(s)	88, 562
BmuI	ACTGGG	1 cut(s)	678
Bpu1102I	GCTNAGC	2 cut(s)	447, 518
Bpu14I	TTCGAA	2 cut(s)	375, 495
BpuMI	CCSGG	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	631
BsaJI	CCNNGG	2 cut(s)	477, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bse118I	RCCGGY	1 cut(s)	576
Bse1I	ACTGG	2 cut(s)	427, 673
Bse3DI	GCAATG	2 cut(s)	106, 612
BseDI	CCNNGG	2 cut(s)	477, 586
BseMI	GCAATG	2 cut(s)	106, 612
BseMII	CTCAG	3 cut(s)	461, 532, 560
BseNI	ACTGG	2 cut(s)	427, 673
BseXI	GCAGC	7 cut(s)	12, 67, 88, 265, 395, 430, 442
BsgI	GTGCAG	2 cut(s)	87, 441
BshFI	GGCC	2 cut(s)	137, 482
BsiSI	CCGG	2 cut(s)	193, 577
BsmAI	GTCTC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	137, 482
Bsp119I	TTCGAA	2 cut(s)	375, 495
Bsp143I	GATC	1 cut(s)	18
Bsp1720I	GCTNAGC	2 cut(s)	447, 518
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	3 cut(s)	78, 242, 299
BspANI	GGCC	2 cut(s)	137, 482
BspCNI	CTCAG	3 cut(s)	460, 531, 559
BspPI	GGATC	1 cut(s)	26
BspT104I	TTCGAA	2 cut(s)	375, 495
BsrDI	GCAATG	2 cut(s)	106, 612
BsrFI	RCCGGY	1 cut(s)	576
BsrI	ACTGG	2 cut(s)	427, 673
BssAI	RCCGGY	1 cut(s)	576
BssECI	CCNNGG	2 cut(s)	477, 586
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	477, 586
Bst6I	CTCTTC	1 cut(s)	563
BstBAI	YACGTR	1 cut(s)	631
BstBI	TTCGAA	2 cut(s)	375, 495
BstC8I	GCNNGC	3 cut(s)	453, 530, 578
BstDEI	CTNAG	3 cut(s)	447, 518, 546
BstDSI	CCRYGG	1 cut(s)	477
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 452, 582
BstNSI	RCATGY	2 cut(s)	616, 640
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	7 cut(s)	12, 67, 88, 265, 395, 430, 442
BstXI	CCANNNNNNTGG	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	137, 482
BtgI	CCRYGG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	3 cut(s)	453, 530, 578
Cfr10I	RCCGGY	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	640
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	6 cut(s)	335, 478, 535, 613, 637, 660
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	3 cut(s)	447, 518, 546
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	477, 586
EcoT14I	CCWWGG	2 cut(s)	477, 586
EcoT22I	ATGCAT	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	477, 586
FaeI	CATG	6 cut(s)	338, 481, 538, 616, 640, 663
FatI	CATG	6 cut(s)	334, 477, 534, 612, 636, 659
Fnu4HI	GCNGC	9 cut(s)	26, 78, 81, 102, 279, 300, 384, 444, 456
Fsp4HI	GCNGC	9 cut(s)	26, 78, 81, 102, 279, 300, 384, 444, 456
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	9 cut(s)	26, 78, 81, 102, 279, 300, 384, 444, 456
HaeIII	GGCC	2 cut(s)	137, 482
HapII	CCGG	2 cut(s)	193, 577
Hin1II	CATG	6 cut(s)	338, 481, 538, 616, 640, 663
HinfI	GANTC	3 cut(s)	159, 254, 338
HpaII	CCGG	2 cut(s)	193, 577
Hpy166II	GTNNAC	2 cut(s)	274, 634
Hpy188I	TCNGA	5 cut(s)	182, 259, 294, 343, 549
Hpy188III	TCNNGA	4 cut(s)	55, 149, 653, 684
Hpy8I	GTNNAC	2 cut(s)	274, 634
HpyAV	CCTTC	2 cut(s)	177, 352
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	6 cut(s)	104, 281, 367, 458, 605, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 452, 582
HpyF3I	CTNAG	3 cut(s)	447, 518, 546
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	6 cut(s)	338, 481, 538, 616, 640, 663
KroI	GCCGGC	1 cut(s)	576
KroNI	GCCGGC	1 cut(s)	578
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	244, 328
LpnPI	CCDG	7 cut(s)	68, 206, 440, 552, 590, 654, 666
Lsp1109I	GCAGC	7 cut(s)	12, 67, 88, 265, 395, 430, 442
LweI	GCATC	2 cut(s)	88, 562
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	630
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	2 cut(s)	364, 550
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	6 cut(s)	237, 321, 489, 501, 646, 679
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	3 cut(s)	127, 179, 543
Mox20I	TGGCCA	1 cut(s)	482
Mph1103I	ATGCAT	1 cut(s)	369
MroNI	GCCGGC	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	2 cut(s)	193, 577
MspR9I	CCNGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	86, 452, 582
NaeI	GCCGGC	1 cut(s)	578
NciI	CCSGG	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	1 cut(s)	18
NgoMIV	GCCGGC	1 cut(s)	576
NlaIII	CATG	6 cut(s)	338, 481, 538, 616, 640, 663
NmeAIII	GCCGAG	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	369
NspI	RCATGY	2 cut(s)	616, 640
NspV	TTCGAA	2 cut(s)	375, 495
PciI	ACATGT	2 cut(s)	612, 636
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PdiI	GCCGGC	1 cut(s)	578
PfeI	GAWTC	2 cut(s)	254, 338
PkrI	GCNGC	9 cut(s)	27, 79, 82, 103, 280, 301, 385, 445, 457
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	631
PscI	ACATGT	2 cut(s)	612, 636
PsiI	TTATAA	1 cut(s)	315
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	9 cut(s)	26, 78, 81, 102, 279, 300, 384, 444, 456
Sau3AI	GATC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	194
SfaNI	GCATC	2 cut(s)	88, 562
SfuI	TTCGAA	2 cut(s)	375, 495
Sse9I	AATT	6 cut(s)	237, 321, 489, 501, 646, 679
SsiI	CCGC	3 cut(s)	78, 242, 299
SspI	AATATT	1 cut(s)	473
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	2 cut(s)	477, 586
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	4 cut(s)	162, 375, 486, 495
TasI	AATT	6 cut(s)	237, 321, 489, 501, 646, 679
TauI	GCSGC	2 cut(s)	80, 302
TfiI	GAWTC	2 cut(s)	254, 338
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	434
TseI	GCWGC	7 cut(s)	25, 80, 101, 278, 383, 443, 455
TspDTI	ATGAA	2 cut(s)	267, 351
TspRI	CASTG	1 cut(s)	434
XapI	RAATTY	3 cut(s)	489, 646, 679
XbaI	TCTAGA	1 cut(s)	148
XceI	RCATGY	2 cut(s)	616, 640
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.