Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Reverse (-)

55116086 .. 55116910

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG350900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGATGATCATATTGCCATAGCGGAGAAATTGATAAAGAAAGCAAACAAGAAGTTGGATGGTTGGGGACTTATCGGTTCCAAACACAAAGATGTTGCCAAACTCTTGGATCAAGCTGCCAACTCTTACAAACTCGCCAAATCCTGGTATAAAGCTAGAGAAACATATATCAATTTGGCAATACATCATTTGAAGACCAAAACCAAACTTGAAGCCGCTGCCACAGCTTTTGTTGATGCTGCACATTGCTACGATATAATATCTGTTGATGAGGCCATTGATTGTCTAGAGCAAGGAGTCGATTACCTCTGTGAAATCGGAAGGCTTAACCCGGCTACAACTTGCTATGAGAAAGCTACACTACTACACAAGGAAATTGCGGAGCTATATGAATCCGAAAAGAACATTGTGAAGGCTGCAACATATTATCAGAAAGCGGCACAACTATATTATAAGGAAATTGTGGAGCGACATGAATCCGAAAACAACATTGAGAAGGCTATGCATTTCTTCGAAAAGGCAGCCGAGCTATTCCAAAACAAAGAACTAACAATCTCTGCCAACCAGTGTTATCAAAAAGTTGCTCAGCTTGCTGCACAGATTAAGCAATATTCCATGGCCAACGAAATTTTCGAAAAAATTGCTACTCGTTCGCTCAGCCACAGCTTGCTCATGGACGAAGCTCAGAGGCATCTCTTCAACGCTGGAATATGCCGGCTCTGCCAAGGAGATGATGTTGTTGCAATGGACATGTCAGTTATGCGATACGTGGACATGTACCCAAATTTTCCTGATACATGGGAGACTGGGAGTGCAAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

274

Amino Acids

31.15

Weight (kDa)

5.95

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	8 - 153	8.1e-30	Soluble NSF attachment protein, SNAP
SNAP	PF14938	151 - 269	1e-29	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	4 cut(s)	23, 216, 380, 437
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	3 cut(s)	627, 784, 817
AfaI	GTAC	1 cut(s)	779
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflIII	ACRYGT	2 cut(s)	750, 774
AgsI	TTSAA	3 cut(s)	193, 212, 700
AjnI	CCWGG	1 cut(s)	143
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	9 cut(s)	116, 155, 227, 356, 385, 529, 589, 666, 683
AluI	AGCT	9 cut(s)	116, 155, 227, 356, 385, 529, 589, 666, 683
Alw26I	GTCTC	1 cut(s)	797
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	2 cut(s)	273, 618
ApeKI	GCWGC	6 cut(s)	116, 218, 239, 416, 521, 593
ApoI	RAATTY	3 cut(s)	627, 784, 817
AsuC2I	CCSGG	1 cut(s)	332
AsuII	TTCGAA	2 cut(s)	513, 633
BalI	TGGCCA	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	200
BbvI	GCAGC	6 cut(s)	103, 205, 226, 403, 533, 580
BccI	CCATC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	1 cut(s)	145
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	797
BfaI	CTAG	2 cut(s)	156, 287
BisI	GCNGC	8 cut(s)	117, 216, 219, 240, 417, 438, 522, 594
BlpI	GCTNAGC	2 cut(s)	585, 656
BlsI	GCNGC	8 cut(s)	118, 217, 220, 241, 418, 439, 523, 595
Bme1390I	CCNGG	2 cut(s)	145, 332
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	145, 332
BmrI	ACTGGG	1 cut(s)	816
BmsI	GCATC	2 cut(s)	226, 700
BmuI	ACTGGG	1 cut(s)	816
BpiI	GAAGAC	1 cut(s)	200
Bpu1102I	GCTNAGC	2 cut(s)	585, 656
Bpu14I	TTCGAA	2 cut(s)	513, 633
BpuMI	CCSGG	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	769
BsaJI	CCNNGG	2 cut(s)	615, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	714
Bse1I	ACTGG	2 cut(s)	565, 811
Bse3DI	GCAATG	2 cut(s)	244, 750
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	615, 724
BseGI	GGATG	2 cut(s)	10, 64
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	2 cut(s)	244, 750
BseMII	CTCAG	3 cut(s)	599, 670, 698
BseNI	ACTGG	2 cut(s)	565, 811
BseXI	GCAGC	6 cut(s)	103, 205, 226, 403, 533, 580
BsgI	GTGCAG	2 cut(s)	225, 579
BshFI	GGCC	2 cut(s)	275, 620
BsiSI	CCGG	2 cut(s)	332, 715
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	797
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	275, 620
Bsp119I	TTCGAA	2 cut(s)	513, 633
Bsp143I	GATC	2 cut(s)	7, 109
Bsp1720I	GCTNAGC	2 cut(s)	585, 656
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	4 cut(s)	23, 216, 380, 437
BspANI	GGCC	2 cut(s)	275, 620
BspCNI	CTCAG	3 cut(s)	598, 669, 697
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	117
BspT104I	TTCGAA	2 cut(s)	513, 633
BsrDI	GCAATG	2 cut(s)	244, 750
BsrFI	RCCGGY	1 cut(s)	714
BsrI	ACTGG	2 cut(s)	565, 811
BssAI	RCCGGY	1 cut(s)	714
BssECI	CCNNGG	2 cut(s)	615, 724
BssMI	GATC	2 cut(s)	7, 109
BssT1I	CCWWGG	2 cut(s)	615, 724
Bst2UI	CCWGG	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	701
BstBAI	YACGTR	1 cut(s)	769
BstBI	TTCGAA	2 cut(s)	513, 633
BstC8I	GCNNGC	3 cut(s)	591, 668, 716
BstDEI	CTNAG	3 cut(s)	585, 656, 684
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	2 cut(s)	10, 64
BstKTI	GATC	2 cut(s)	10, 112
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	2 cut(s)	7, 109
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 590, 720
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	2 cut(s)	754, 778
BstSCI	CCNGG	2 cut(s)	143, 330
BstV1I	GCAGC	6 cut(s)	103, 205, 226, 403, 533, 580
BstV2I	GAAGAC	1 cut(s)	200
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	275, 620
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	2 cut(s)	10, 64
BtsIMutI	CAGTG	1 cut(s)	572
Cac8I	GCNNGC	3 cut(s)	591, 668, 716
Cfr10I	RCCGGY	1 cut(s)	714
Csp6I	GTAC	1 cut(s)	778
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	6 cut(s)	473, 616, 673, 751, 775, 798
CviQI	GTAC	1 cut(s)	778
DdeI	CTNAG	3 cut(s)	585, 656, 684
DpnI	GATC	2 cut(s)	9, 111
DpnII	GATC	2 cut(s)	7, 109
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Eco130I	CCWWGG	2 cut(s)	615, 724
EcoRII	CCWGG	1 cut(s)	143
EcoT14I	CCWWGG	2 cut(s)	615, 724
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	615, 724
FaeI	CATG	6 cut(s)	476, 619, 676, 754, 778, 801
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	6 cut(s)	472, 615, 672, 750, 774, 797
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	8 cut(s)	117, 216, 219, 240, 417, 438, 522, 594
FokI	GGATG	2 cut(s)	17, 71
Fsp4HI	GCNGC	8 cut(s)	117, 216, 219, 240, 417, 438, 522, 594
FspBI	CTAG	2 cut(s)	156, 287
GluI	GCNGC	8 cut(s)	117, 216, 219, 240, 417, 438, 522, 594
HaeIII	GGCC	2 cut(s)	275, 620
HapII	CCGG	2 cut(s)	332, 715
Hin1II	CATG	6 cut(s)	476, 619, 676, 754, 778, 801
HinfI	GANTC	3 cut(s)	297, 392, 476
HpaII	CCGG	2 cut(s)	332, 715
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	5 cut(s)	320, 397, 432, 481, 687
Hpy188III	TCNNGA	3 cut(s)	287, 791, 822
Hpy8I	GTNNAC	1 cut(s)	772
HpyAV	CCTTC	3 cut(s)	315, 406, 490
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	6 cut(s)	242, 419, 505, 596, 743, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 590, 720
HpyF3I	CTNAG	3 cut(s)	585, 656, 684
HpySE526I	ACGT	1 cut(s)	768
Hsp92II	CATG	6 cut(s)	476, 619, 676, 754, 778, 801
KroI	GCCGGC	1 cut(s)	714
KroNI	GCCGGC	1 cut(s)	716
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	7, 109
LmnI	GCTCC	2 cut(s)	382, 466
LpnPI	CCDG	8 cut(s)	130, 157, 345, 578, 690, 728, 792, 804
Lsp1109I	GCAGC	6 cut(s)	103, 205, 226, 403, 533, 580
LweI	GCATC	2 cut(s)	226, 700
MaeI	CTAG	2 cut(s)	156, 287
MaeII	ACGT	1 cut(s)	768
MalI	GATC	2 cut(s)	9, 111
MboI	GATC	2 cut(s)	7, 109
MboII	GAAGA	3 cut(s)	205, 502, 688
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	8 cut(s)	29, 172, 375, 459, 627, 639, 784, 817
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	265, 317, 681
Mox20I	TGGCCA	1 cut(s)	620
Mph1103I	ATGCAT	1 cut(s)	507
MroNI	GCCGGC	1 cut(s)	714
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	2 cut(s)	327, 603
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	2 cut(s)	332, 715
MspR9I	CCNGG	2 cut(s)	145, 332
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	224, 590, 720
NaeI	GCCGGC	1 cut(s)	716
NciI	CCSGG	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	2 cut(s)	7, 109
NgoMIV	GCCGGC	1 cut(s)	714
NlaIII	CATG	6 cut(s)	476, 619, 676, 754, 778, 801
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	550
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	2 cut(s)	754, 778
NspV	TTCGAA	2 cut(s)	513, 633
PciI	ACATGT	2 cut(s)	750, 774
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PdiI	GCCGGC	1 cut(s)	716
PfeI	GAWTC	2 cut(s)	392, 476
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	8 cut(s)	118, 217, 220, 241, 418, 439, 523, 595
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	769
PscI	ACATGT	2 cut(s)	750, 774
PsiI	TTATAA	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	779
RsaNI	GTAC	1 cut(s)	778
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	327, 603
SatI	GCNGC	8 cut(s)	117, 216, 219, 240, 417, 438, 522, 594
Sau3AI	GATC	2 cut(s)	7, 109
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	2 cut(s)	145, 332
SfaNI	GCATC	2 cut(s)	226, 700
SfuI	TTCGAA	2 cut(s)	513, 633
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	8 cut(s)	29, 172, 375, 459, 627, 639, 784, 817
SsiI	CCGC	4 cut(s)	23, 216, 380, 437
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	2 cut(s)	156, 287
StyD4I	CCNGG	2 cut(s)	143, 330
StyI	CCWWGG	2 cut(s)	615, 724
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	3 cut(s)	300, 513, 633
TasI	AATT	8 cut(s)	29, 172, 375, 459, 627, 639, 784, 817
TauI	GCSGC	2 cut(s)	218, 440
TfiI	GAWTC	2 cut(s)	392, 476
Tru1I	TTAA	2 cut(s)	327, 603
Tru9I	TTAA	2 cut(s)	327, 603
TscAI	CASTG	1 cut(s)	572
TseI	GCWGC	6 cut(s)	116, 218, 239, 416, 521, 593
TspDTI	ATGAA	2 cut(s)	405, 489
TspRI	CASTG	1 cut(s)	572
Van91I	CCANNNNNTGG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	627, 784, 817
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	2 cut(s)	754, 778
XspI	CTAG	2 cut(s)	156, 287
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.