Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Reverse (-)

55218931 .. 55219425

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG363900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGAGACTGGGAGTGCAAATTCTTGACCTACATTAAAGCTCCACTAGTTCAACGAGACGTTGCTAAGTTCAGTGACGCGGTGAAGACATTACCACGGCTCGATTCATGGACGACTAACTTGCTTTCGAGAGTAGAGGAGAAACTGAAAGCCCCCAAGTCCGTGAGAACGCGATGGTCGACGAATAAGGTCGCAGACTTGACACCCGCCAGCTCCACCACTACTTTTGGTGACGGAGGAAAGCAAAGAGAGATGTGCACTGACTTGCAAAGATCACAGACAATCGTAATGCGCAGGTCACCGCCGACCGGAAGTAAACTCTTGCGGTCTAGTTCAATCAAAGAGGATATCAAAAAAATGGGAGGGAGGCCGGTGAATGGGATCCTCCAAACGGGACTGACCTTCAAATTAAAGAAGCCTCTCAATGGCCAGAGCCAGAGTCCAGACAGTGATTTTTCATTTTTGTGTAGTGATTGTCATAGTGCCACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

164

Amino Acids

18.21

Weight (kDa)

9.79

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	2 cut(s)	80, 172
AciI	CCGC	4 cut(s)	80, 207, 302, 325
AclWI	GGATC	2 cut(s)	376, 389
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	1 cut(s)	20
AfiI	CCNNNNNNNGG	4 cut(s)	308, 377, 391, 425
AgsI	TTSAA	3 cut(s)	53, 336, 406
AhlI	ACTAGT	1 cut(s)	46
AluBI	AGCT	2 cut(s)	41, 213
AluI	AGCT	2 cut(s)	41, 213
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	2 cut(s)	376, 389
AoxI	GGCC	2 cut(s)	368, 427
ApaLI	GTGCAC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	4 cut(s)	94, 242, 291, 385
BaeGI	GKGCMC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	260
BccI	CCATC	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BcoDI	GTCTC	1 cut(s)	51
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	2 cut(s)	47, 330
BfuAI	ACCTGC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 377, 391, 425
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	4 cut(s)	308, 377, 391, 425
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	80, 172
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	370, 429
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	309, 371
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	4 cut(s)	308, 377, 391, 425
BsmAI	GTCTC	1 cut(s)	51
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	370, 429
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	272, 381
BspACI	CCGC	4 cut(s)	80, 207, 302, 325
BspANI	GGCC	2 cut(s)	370, 429
BspFNI	CGCG	2 cut(s)	80, 172
BspLI	GGNNCC	1 cut(s)	383
BspMI	ACCTGC	1 cut(s)	285
BspPI	GGATC	2 cut(s)	376, 389
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	272, 381
Bst4CI	ACNGT	2 cut(s)	449, 490
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	95
BstEII	GGTNACC	1 cut(s)	297
BstFNI	CGCG	2 cut(s)	80, 172
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	2 cut(s)	275, 384
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	272, 381
BstMCI	CGRYCG	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	2 cut(s)	80, 172
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	370, 429
BtgI	CCRYGG	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	187
BtsIMutI	CAGTG	4 cut(s)	79, 258, 454, 486
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	370
CseI	GACGC	1 cut(s)	86
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	8 cut(s)	41, 100, 152, 213, 370, 418, 429, 435
CviKI_1	RGCY	8 cut(s)	41, 100, 152, 213, 370, 418, 429, 435
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	274, 383
DpnII	GATC	2 cut(s)	272, 381
EaeI	YGGCCR	1 cut(s)	427
Eco32I	GATATC	1 cut(s)	349
Eco91I	GGTNACC	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	297
EcoRV	GATATC	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	1 cut(s)	111
FaiI	YATR	2 cut(s)	109, 480
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	1 cut(s)	107
FauI	CCCGC	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	179
FspBI	CTAG	2 cut(s)	47, 330
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	370, 429
HapII	CCGG	2 cut(s)	309, 371
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	2 cut(s)	104, 439
HpaII	CCGG	2 cut(s)	309, 371
HphI	GGTGA	4 cut(s)	94, 242, 291, 385
Hpy166II	GTNNAC	3 cut(s)	180, 258, 317
Hpy188III	TCNNGA	3 cut(s)	25, 129, 443
Hpy8I	GTNNAC	3 cut(s)	180, 258, 317
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	2 cut(s)	449, 490
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	3 cut(s)	18, 258, 268
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	111
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	272, 381
LmnI	GCTCC	2 cut(s)	46, 218
LpnPI	CCDG	7 cut(s)	223, 280, 322, 384, 443, 449, 456
MaeI	CTAG	2 cut(s)	47, 330
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	3 cut(s)	74, 230, 297
MalI	GATC	2 cut(s)	274, 383
MboI	GATC	2 cut(s)	272, 381
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	2 cut(s)	20, 407
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	7 cut(s)	130, 230, 337, 356, 360, 395, 429
Mox20I	TGGCCA	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	2 cut(s)	36, 410
MslI	CAYNNNNRTG	1 cut(s)	463
Msp20I	TGGCCA	1 cut(s)	429
MspI	CCGG	2 cut(s)	309, 371
MvnI	CGCG	2 cut(s)	80, 172
NdeII	GATC	2 cut(s)	272, 381
NlaIII	CATG	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	383
NmuCI	GTSAC	3 cut(s)	74, 230, 297
NsbI	TGCGCA	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PspEI	GGTNACC	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	463
SalI	GTCGAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	36, 410
Sau3AI	GATC	2 cut(s)	272, 381
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	7 cut(s)	32, 43, 63, 192, 215, 299, 404
SmiMI	CAYNNNNRTG	1 cut(s)	463
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	2 cut(s)	20, 407
SsiI	CCGC	4 cut(s)	80, 207, 302, 325
SspMI	CTAG	2 cut(s)	47, 330
TaaI	ACNGT	2 cut(s)	449, 490
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	3 cut(s)	102, 128, 179
TasI	AATT	2 cut(s)	20, 407
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	2 cut(s)	36, 410
Tru9I	TTAA	2 cut(s)	36, 410
TscAI	CASTG	4 cut(s)	79, 265, 454, 493
TseFI	GTSAC	3 cut(s)	74, 230, 297
Tsp45I	GTSAC	3 cut(s)	74, 230, 297
TspDTI	ATGAA	2 cut(s)	96, 447
TspGWI	ACGGA	2 cut(s)	151, 249
TspRI	CASTG	4 cut(s)	79, 265, 454, 493
VneI	GTGCAC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	2 cut(s)	47, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.