Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Reverse (-)

56245388 .. 56245720

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26348

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCATTTCTTCGAAAAGGCAGCCGAGCTATTCCAAAACAAAGAACTAACAGTCTCTGCCAACCAGTGTTATCAAAAAGCTGCTCAGCTTGCTGCACAGATTGAGCAATATTCCATGGCCATCGAAATTTTCAAAAAAATTGCTACTCGTTCGCTCAGCCACAGCTTGCTCATGGACGAAGCTCAGAGGCATCTCTTCAACGCTGGAATATGCCGGCTCTGCCAAGGAGATGATGTTGTTGCAATGGACATGTCAGTTATGCGATACGTGGACATGTACCCAATTTTCCTGATACATGGGAGACTGGGAGTGCAAATTCTTGACCTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

110

Amino Acids

12.61

Weight (kDa)

6.17

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	1 - 96	3.6e-24	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	2 cut(s)	126, 315
AfaI	GTAC	1 cut(s)	278
AflIII	ACRYGT	2 cut(s)	249, 273
AgsI	TTSAA	2 cut(s)	133, 199
AluBI	AGCT	5 cut(s)	28, 80, 88, 165, 182
AluI	AGCT	5 cut(s)	28, 80, 88, 165, 182
Alw26I	GTCTC	2 cut(s)	58, 295
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	20, 80, 92
ApoI	RAATTY	2 cut(s)	126, 315
AsuII	TTCGAA	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	32, 67, 79
BccI	CCATC	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	58, 295
BisI	GCNGC	3 cut(s)	21, 81, 93
BlpI	GCTNAGC	2 cut(s)	84, 155
BlsI	GCNGC	3 cut(s)	22, 82, 94
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	314
Bpu1102I	GCTNAGC	2 cut(s)	84, 155
Bpu14I	TTCGAA	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	114, 223
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bse118I	RCCGGY	1 cut(s)	213
Bse1I	ACTGG	2 cut(s)	64, 309
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	114, 223
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	98, 169, 197
BseNI	ACTGG	2 cut(s)	64, 309
BseXI	GCAGC	3 cut(s)	32, 67, 79
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	58, 295
BsnI	GGCC	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1720I	GCTNAGC	2 cut(s)	84, 155
Bsp19I	CCATGG	1 cut(s)	114
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	3 cut(s)	97, 168, 196
BspT104I	TTCGAA	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	64, 309
BssAI	RCCGGY	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	114, 223
BssT1I	CCWWGG	2 cut(s)	114, 223
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	90, 167, 215
BstDEI	CTNAG	3 cut(s)	84, 155, 183
BstDSI	CCRYGG	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	58, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 219
BstNSI	RCATGY	2 cut(s)	253, 277
BstV1I	GCAGC	3 cut(s)	32, 67, 79
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	3 cut(s)	90, 167, 215
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	5 cut(s)	115, 172, 250, 274, 296
CviJI	RGCY	9 cut(s)	23, 28, 80, 88, 119, 159, 165, 182, 217
CviKI_1	RGCY	9 cut(s)	23, 28, 80, 88, 119, 159, 165, 182, 217
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	3 cut(s)	84, 155, 183
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	114, 223
EcoT14I	CCWWGG	2 cut(s)	114, 223
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	114, 223
FaeI	CATG	5 cut(s)	118, 175, 253, 277, 299
FaiI	YATR	7 cut(s)	116, 173, 211, 251, 260, 275, 297
FatI	CATG	5 cut(s)	114, 171, 249, 273, 295
Fnu4HI	GCNGC	3 cut(s)	21, 81, 93
Fsp4HI	GCNGC	3 cut(s)	21, 81, 93
GluI	GCNGC	3 cut(s)	21, 81, 93
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	214
Hin1II	CATG	5 cut(s)	118, 175, 253, 277, 299
HpaII	CCGG	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	2 cut(s)	289, 320
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	4, 95, 242, 313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 219
HpyF3I	CTNAG	3 cut(s)	84, 155, 183
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	118, 175, 253, 277, 299
KroI	GCCGGC	1 cut(s)	213
KroNI	GCCGGC	1 cut(s)	215
LpnPI	CCDG	5 cut(s)	77, 189, 227, 290, 302
Lsp1109I	GCAGC	3 cut(s)	32, 67, 79
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	267
MboII	GAAGA	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	4 cut(s)	126, 138, 282, 315
MluNI	TGGCCA	1 cut(s)	119
MnlI	CCTC	1 cut(s)	180
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	1 cut(s)	331
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	89, 219
NaeI	GCCGGC	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	114
NgoMIV	GCCGGC	1 cut(s)	213
NlaIII	CATG	5 cut(s)	118, 175, 253, 277, 299
NmeAIII	GCCGAG	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	253, 277
NspV	TTCGAA	1 cut(s)	12
PciI	ACATGT	2 cut(s)	249, 273
PdiI	GCCGGC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	22, 82, 94
Ppu21I	YACGTR	1 cut(s)	268
PscI	ACATGT	2 cut(s)	249, 273
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	3 cut(s)	21, 81, 93
SetI	ASST	7 cut(s)	30, 82, 90, 167, 184, 270, 327
SfaNI	GCATC	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	12
Sse9I	AATT	4 cut(s)	126, 138, 282, 315
SspI	AATATT	1 cut(s)	110
StyI	CCWWGG	2 cut(s)	114, 223
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	12, 123
TasI	AATT	4 cut(s)	126, 138, 282, 315
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	1 cut(s)	71
TseI	GCWGC	3 cut(s)	20, 80, 92
TspRI	CASTG	1 cut(s)	71
XapI	RAATTY	2 cut(s)	126, 315
XceI	RCATGY	2 cut(s)	253, 277
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.