Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Reverse (-)

20638178 .. 20639074

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAAGATCATACTGCTAGAGCAGAGAAATTCGAAAAGAAAGCAAAGATAGATATGGAGAAGGCTATCGAGTTTTCCGAGAAGAGATTTGAGCTCTTCCAAAAGGAACTACCATCAGTTTCAGTGCAACAGTGCTATGAGAAGGCTGCTCAACTTGCTGCTCAGATAGAGCAATATCCCAAGGCCATCAAAATGTACGAAAATATTGCGAAGTACTCGCTCAAGCACGGGCTACTCCTCGGGCACAAAGTTAAGCGGCATCTTCTCAACGCCGGGATATGCAGATTCTGCATCAGAGGAGATGACGCTAGCGCTGTTGCAATGGCCAAGCAATATGCAGCTTTGCCAACTTTTCGTGATACATGGCAGTGCCAGTTCTTGGAGAATATAGCTGAATCAGTTGAGAAACGTGACCTTACCATGTTCCGTGATGTGGTAAGGAGATTTGATAGTATGACACCACTCGATTCATGCGCAACCAACTTGCTCTTGAGAGTGGAGGAGAAACTGAAACCCTCGATGACCAGGAGAACGCAGCGGCCAACCTCAGACATCATCACTTGCTGTACACAGCTATACAAGGAAATTGCGGAGCTATTTGAATCCGAAAAGAACATGGAGAAGGTCGCAGACTTGACACCCGCCAGCTCCACCACTACGTTTGGTGACGGAGGAAAGCAAAAGGAGATGTGTGCTAGCTTGCAAAGATCACAGACAAACGTAATGCGCAGGTTGCCGCTGACCGAAAGTACACTCTTGCACTCTAACTCAAGGATAGAGACAAGTGACAATTCAAACAAAGAGGATGGTATCAGAAAAATGGGAGAAAAGCCGGTGAATTGGATCCGCCAAAAGGGACTGACCTTAAAAAGAAGCCTCTCAATGGCCAAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

299

Amino Acids

34.19

Weight (kDa)

9.22

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	8 - 170	2.3e-34	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	475, 728
Acc36I	ACCTGC	1 cut(s)	720
AccB7I	CCANNNNNTGG	1 cut(s)	379
AciI	CCGC	6 cut(s)	256, 538, 590, 642, 737, 847
AclWI	GGATC	2 cut(s)	838, 851
AcoI	YGGCCR	3 cut(s)	324, 539, 885
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	4 cut(s)	197, 215, 568, 751
AfeI	AGCGCT	1 cut(s)	313
AfiI	CCNNNNNNNGG	4 cut(s)	379, 433, 853, 883
AgsI	TTSAA	2 cut(s)	602, 795
AjnI	CCWGG	1 cut(s)	524
AluBI	AGCT	7 cut(s)	94, 341, 392, 574, 595, 648, 699
AluI	AGCT	7 cut(s)	94, 341, 392, 574, 595, 648, 699
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	773
AlwI	GGATC	2 cut(s)	838, 851
AlwNI	CAGNNNCTG	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	313
AoxI	GGCC	4 cut(s)	183, 324, 539, 885
ApeKI	GCWGC	4 cut(s)	146, 158, 338, 535
ApoI	RAATTY	1 cut(s)	29
AspLEI	GCGC	3 cut(s)	314, 476, 729
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	677, 847
AsuII	TTCGAA	1 cut(s)	33
AsuNHI	GCTAGC	2 cut(s)	308, 695
AvaI	CYCGRG	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	246
BalI	TGGCCA	2 cut(s)	326, 887
BamHI	GGATCC	1 cut(s)	843
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	4 cut(s)	133, 145, 350, 547
BccI	CCATC	3 cut(s)	121, 194, 800
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	1 cut(s)	526
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	773
BfaI	CTAG	3 cut(s)	18, 309, 696
BfoI	RGCGCY	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	720
BisI	GCNGC	7 cut(s)	147, 159, 257, 339, 536, 539, 737
BlsI	GCNGC	7 cut(s)	148, 160, 258, 340, 537, 540, 738
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	274, 526
BmeT110I	CYCGRG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	845
BmrFI	CCNGG	2 cut(s)	274, 526
BmsI	GCATC	2 cut(s)	268, 300
BmtI	GCTAGC	2 cut(s)	312, 699
Bpu14I	TTCGAA	1 cut(s)	33
BpuEI	CTTGAG	3 cut(s)	206, 511, 754
BpuMI	CCSGG	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	180, 238
Bsc4I	CCNNNNNNNGG	4 cut(s)	379, 433, 853, 883
Bse118I	RCCGGY	1 cut(s)	832
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	526
BseDI	CCNNGG	2 cut(s)	180, 238
BseGI	GGATG	1 cut(s)	811
BseLI	CCNNNNNNNGG	4 cut(s)	379, 433, 853, 883
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	176, 561
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	3 cut(s)	227, 312, 515
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	4 cut(s)	133, 145, 350, 547
BshFI	GGCC	4 cut(s)	185, 326, 541, 887
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	273, 833
BslFI	GGGAC	1 cut(s)	870
BslI	CCNNNNNNNGG	4 cut(s)	379, 433, 853, 883
BsmAI	GTCTC	1 cut(s)	773
BsmFI	GGGAC	1 cut(s)	870
BsnI	GGCC	4 cut(s)	185, 326, 541, 887
BsoBI	CYCGRG	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	96, 246
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	3 cut(s)	7, 707, 843
BspACI	CCGC	6 cut(s)	256, 538, 590, 642, 737, 847
BspANI	GGCC	4 cut(s)	185, 326, 541, 887
BspCNI	CTCAG	2 cut(s)	175, 560
BspLI	GGNNCC	1 cut(s)	845
BspMI	ACCTGC	1 cut(s)	720
BspOI	GCTAGC	2 cut(s)	312, 699
BspPI	GGATC	2 cut(s)	838, 851
BspQI	GCTCTTC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	832
BsrGI	TGTACA	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	832
BssECI	CCNNGG	2 cut(s)	180, 238
BssMI	GATC	3 cut(s)	7, 707, 843
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	2 cut(s)	132, 894
Bst6I	CTCTTC	2 cut(s)	77, 101
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstAUI	TGTACA	1 cut(s)	566
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	4 cut(s)	310, 646, 697, 701
BstDEI	CTNAG	2 cut(s)	162, 547
BstF5I	GGATG	1 cut(s)	811
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	3 cut(s)	314, 476, 729
BstKTI	GATC	3 cut(s)	10, 710, 846
BstMAI	GTCTC	1 cut(s)	773
BstMBI	GATC	3 cut(s)	7, 707, 843
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 288, 733
BstNI	CCWGG	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	272, 524
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	4 cut(s)	133, 145, 350, 547
BstX2I	RGATCY	1 cut(s)	843
BstYI	RGATCY	1 cut(s)	843
BsuRI	GGCC	4 cut(s)	185, 326, 541, 887
BtsCI	GGATG	1 cut(s)	811
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	3 cut(s)	129, 137, 374
BveI	ACCTGC	1 cut(s)	720
Cac8I	GCNNGC	4 cut(s)	310, 646, 697, 701
CaiI	CAGNNNCTG	1 cut(s)	288
CfoI	GCGC	3 cut(s)	314, 476, 729
Cfr10I	RCCGGY	1 cut(s)	832
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	4 cut(s)	196, 214, 567, 750
CspCI	CAANNNNNGTGG	2 cut(s)	643, 678
CviAII	CATG	4 cut(s)	363, 421, 471, 616
CviQI	GTAC	4 cut(s)	196, 214, 567, 750
DdeI	CTNAG	2 cut(s)	162, 547
DpnI	GATC	3 cut(s)	9, 709, 845
DpnII	GATC	3 cut(s)	7, 707, 843
EaeI	YGGCCR	3 cut(s)	324, 539, 885
Eam1104I	CTCTTC	2 cut(s)	77, 101
EarI	CTCTTC	2 cut(s)	77, 101
EciI	GGCGGA	1 cut(s)	836
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	96
Eco47III	AGCGCT	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	4 cut(s)	366, 424, 474, 619
FaqI	GGGAC	1 cut(s)	870
FatI	CATG	4 cut(s)	362, 420, 470, 615
FauI	CCCGC	1 cut(s)	649
Fnu4HI	GCNGC	7 cut(s)	147, 159, 257, 339, 536, 539, 737
FokI	GGATG	1 cut(s)	818
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	7 cut(s)	147, 159, 257, 339, 536, 539, 737
FspBI	CTAG	3 cut(s)	18, 309, 696
FspI	TGCGCA	2 cut(s)	475, 728
GlaI	GCGC	3 cut(s)	313, 475, 728
GluI	GCNGC	7 cut(s)	147, 159, 257, 339, 536, 539, 737
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	4 cut(s)	185, 326, 541, 887
HapII	CCGG	2 cut(s)	273, 833
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	3 cut(s)	314, 476, 729
Hin1II	CATG	4 cut(s)	366, 424, 474, 619
Hin6I	GCGC	3 cut(s)	312, 474, 727
HinP1I	GCGC	3 cut(s)	312, 474, 727
HinfI	GANTC	4 cut(s)	285, 395, 467, 602
HpaII	CCGG	2 cut(s)	273, 833
HphI	GGTGA	2 cut(s)	677, 847
Hpy166II	GTNNAC	2 cut(s)	569, 752
Hpy188I	TCNGA	6 cut(s)	79, 165, 296, 550, 607, 815
Hpy188III	TCNNGA	2 cut(s)	356, 490
Hpy8I	GTNNAC	2 cut(s)	569, 752
HpyAV	CCTTC	3 cut(s)	55, 136, 616
HpyCH4III	ACNGT	2 cut(s)	132, 894
HpyCH4IV	ACGT	3 cut(s)	409, 659, 720
HpyCH4V	TGCA	7 cut(s)	127, 282, 291, 320, 338, 703, 760
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 288, 733
HpyF3I	CTNAG	2 cut(s)	162, 547
HpySE526I	ACGT	3 cut(s)	409, 659, 720
Hsp92II	CATG	4 cut(s)	366, 424, 474, 619
HspAI	GCGC	3 cut(s)	312, 474, 727
Kzo9I	GATC	3 cut(s)	7, 707, 843
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	592, 653
LpnPI	CCDG	7 cut(s)	286, 386, 511, 538, 658, 715, 846
Lsp1109I	GCAGC	4 cut(s)	133, 145, 350, 547
LweI	GCATC	2 cut(s)	268, 300
MaeI	CTAG	3 cut(s)	18, 309, 696
MaeII	ACGT	3 cut(s)	409, 659, 720
MaeIII	GTNAC	3 cut(s)	410, 665, 785
MalI	GATC	3 cut(s)	9, 709, 845
MboI	GATC	3 cut(s)	7, 707, 843
MboII	GAAGA	4 cut(s)	17, 88, 94, 254
MflI	RGATCY	1 cut(s)	843
MhlI	GDGCHC	2 cut(s)	96, 246
MlsI	TGGCCA	2 cut(s)	326, 887
MluCI	AATT	4 cut(s)	29, 585, 790, 838
MluNI	TGGCCA	2 cut(s)	326, 887
MnlI	CCTC	8 cut(s)	248, 290, 493, 526, 556, 665, 796, 887
Mox20I	TGGCCA	2 cut(s)	326, 887
MscI	TGGCCA	2 cut(s)	326, 887
MseI	TTAA	2 cut(s)	252, 866
MslI	CAYNNNNRTG	2 cut(s)	191, 367
Msp20I	TGGCCA	2 cut(s)	326, 887
MspA1I	CMGCKG	2 cut(s)	538, 739
MspI	CCGG	2 cut(s)	273, 833
MspR9I	CCNGG	2 cut(s)	274, 526
MvaI	CCWGG	1 cut(s)	526
MwoI	GCNNNNNNNGC	3 cut(s)	155, 288, 733
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	3 cut(s)	7, 707, 843
NheI	GCTAGC	2 cut(s)	308, 695
NlaIII	CATG	4 cut(s)	366, 424, 474, 619
NlaIV	GGNNCC	1 cut(s)	845
NmuCI	GTSAC	3 cut(s)	410, 665, 785
NsbI	TGCGCA	2 cut(s)	475, 728
NspV	TTCGAA	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	4 cut(s)	285, 395, 467, 602
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	7 cut(s)	148, 160, 258, 340, 537, 540, 738
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	1 cut(s)	845
PstNI	CAGNNNCTG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	843
RsaI	GTAC	4 cut(s)	197, 215, 568, 751
RsaNI	GTAC	4 cut(s)	196, 214, 567, 750
RseI	CAYNNNNRTG	2 cut(s)	191, 367
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	252, 866
SatI	GCNGC	7 cut(s)	147, 159, 257, 339, 536, 539, 737
Sau3AI	GATC	3 cut(s)	7, 707, 843
ScaI	AGTACT	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	274, 526
SduI	GDGCHC	2 cut(s)	96, 246
SfaNI	GCATC	2 cut(s)	268, 300
SfuI	TTCGAA	1 cut(s)	33
SmiMI	CAYNNNNRTG	2 cut(s)	191, 367
SmlI	CTYRAG	3 cut(s)	221, 490, 769
SmoI	CTYRAG	3 cut(s)	221, 490, 769
Sse9I	AATT	4 cut(s)	29, 585, 790, 838
SsiI	CCGC	6 cut(s)	256, 538, 590, 642, 737, 847
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	3 cut(s)	18, 309, 696
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	272, 524
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	132, 894
TaiI	ACGT	3 cut(s)	412, 662, 723
TaqI	TCGA	4 cut(s)	33, 69, 465, 518
TaqII	GACCGA	1 cut(s)	758
TasI	AATT	4 cut(s)	29, 585, 790, 838
TatI	WGTACW	3 cut(s)	213, 566, 749
TauI	GCSGC	3 cut(s)	259, 541, 739
TfiI	GAWTC	4 cut(s)	285, 395, 467, 602
Tru1I	TTAA	2 cut(s)	252, 866
Tru9I	TTAA	2 cut(s)	252, 866
TscAI	CASTG	3 cut(s)	129, 137, 374
TseFI	GTSAC	3 cut(s)	410, 665, 785
TseI	GCWGC	4 cut(s)	146, 158, 338, 535
Tsp45I	GTSAC	3 cut(s)	410, 665, 785
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	2 cut(s)	416, 684
TspRI	CASTG	3 cut(s)	129, 137, 374
Van91I	CCANNNNNTGG	1 cut(s)	379
XapI	RAATTY	1 cut(s)	29
XspI	CTAG	3 cut(s)	18, 309, 696
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.