FvH4_1g01190
ERF Family

Calcineurin-like metallo-phosphoesterase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010859
Physical Location & Seq
Forward (+)
601299 .. 604079
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01190.t1

Sequence Viewer

Length: 816 bp
ATGGAGAAGAAACCATTATGGGTTCCAACTATAGTGGCGCAAGTGAGTCTCTGCTTATGTCTCTACCTTGCCTTTCAACTAGGTCAGCCTCAGAACTCTGTGTACCTCCATAGAACAAGTGAAAGCAGAGATCTTTACTTCATCAGCGTCAGAGGAGGGTTCAGACCTCTCAAGCAACAGACCCATCTTCTCAAACAGATGGCGAGGGTGGCAAAGAAGTACAAGGCAAAATTTGTGGTGGATATCAGTGATCTTGGGAAGGATGATCCACTCATGCAGAATGGTACCCTGCATTTTTCATCACTGAAGGTTCCCTGGTATACTACTACAGTATCAGGCAGATATGGAGGGGGTTACTTCCAGAAGCAGATAAGACTACCTTATGAGAAAACCTTAGACCTCATTGGTGTGGATACTGGGTCAATTGAGGGGAAGGTTTTAATCTCGGAAACATCAAGTGAGTTTGGATACAATCAATTACATTGGCTGACAAGGACACTAGAGGCAACCAGCAGTGACTGGCGCATAGTTGTTGGTTTCCACCCATTGGCTAAATGCGGTGATAATGAAGAGGGAATGGAAGCAAAACAAGTTGTTGAGTCTCTACACCATAGTTTTATGAAATATGAAGTGAATGCGTATATCAGTGGACAGGGTTGCACTAGCAATGTCCAACAAGGTAGCCTGAGCTACATTGGGAACCCGGGCTCAATGAATGCACTAACTTCTGAGACATCAGTCACCTACTTTGTTAGCTCGAGCGGGGAAGTTGTGCATAAGTCTGTACTCCATCAGAAGGGTCGAGCAGCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.26

Weight (kDa)

8.89

Isoelectric Point (pI)

24.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30993 AT4G30993 AT4G30993
fragaria_vesca FvH4_1g01190 FvH4_1g01190
malus_domestica MD02G1010000.v1.1 MD02G1010100.v1.1
prunus_persica Prupe.7G260000_v2.0.a1
pyrus_communis pycom02g00880 pycom15g13910
rosa_chinensis RchiOBHm_Chr2g0085991
rosa_laevigata RLG00000015732
rosa_multiflora Rmu_ssc0000355.1_g000024
rosa_roxburghii Rroxscaffold_2G00154870
rosa_rugosa Rorug01G0464900
rosa_samantha Rh2AG014100 Rh2BG014600 Rh2CG015100 Rh2DG016400
rosa_wichuraiana Rw2G001250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 547
AccBSI CCGCTC 1 cut(s) 762
AccI GTMKAC 1 cut(s) 320
AciI CCGC 2 cut(s) 558, 762
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 4 cut(s) 104, 221, 286, 786
AfiI CCNNNNNNNGG 2 cut(s) 547, 796
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 2 cut(s) 690, 756
AluI AGCT 2 cut(s) 690, 756
Alw26I GTCTC 4 cut(s) 53, 65, 606, 725
AlwI GGATC 1 cut(s) 260
AlwNI CAGNNNCTG 1 cut(s) 519
Ama87I CYCGRG 2 cut(s) 703, 757
ApeKI GCWGC 1 cut(s) 806
ApoI RAATTY 1 cut(s) 230
Asp718I GGTACC 1 cut(s) 284
AspLEI GCGC 2 cut(s) 40, 525
AsuC2I CCSGG 2 cut(s) 704, 705
AsuHPI GGTGA 2 cut(s) 572, 733
AvaI CYCGRG 2 cut(s) 703, 757
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 710
BccI CCATC 3 cut(s) 192, 193, 798
BciT130I CCWGG 1 cut(s) 316
BciVI GTATCC 2 cut(s) 406, 461
BcnI CCSGG 2 cut(s) 704, 705
BcoDI GTCTC 4 cut(s) 53, 65, 606, 725
BfaI CTAG 3 cut(s) 80, 500, 663
BfmI CTRYAG 2 cut(s) 30, 327
BfuI GTATCC 2 cut(s) 406, 461
BglII AGATCT 1 cut(s) 130
BisI GCNGC 1 cut(s) 807
BlsI GCNGC 1 cut(s) 808
Bme1390I CCNGG 3 cut(s) 316, 704, 705
BmeT110I CYCGRG 2 cut(s) 703, 757
BmiI GGNNCC 4 cut(s) 24, 286, 312, 701
BmrFI CCNGG 3 cut(s) 316, 704, 705
BmrI ACTGGG 1 cut(s) 426
BmuI ACTGGG 1 cut(s) 426
BoxI GACNNNNGTC 1 cut(s) 737
Bpu10I CCTNAGC 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 704, 705
BsaJI CCNNGG 2 cut(s) 314, 703
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 796
Bse1I ACTGG 2 cut(s) 421, 524
Bse3DI GCAATG 1 cut(s) 673
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 2 cut(s) 314, 703
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 547, 796
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 3 cut(s) 104, 677, 720
BseNI ACTGG 2 cut(s) 421, 524
BseRI GAGGAG 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 284
BsiHKCI CYCGRG 2 cut(s) 703, 757
BsiSI CCGG 1 cut(s) 704
BslI CCNNNNNNNGG 2 cut(s) 547, 796
BsmAI GTCTC 4 cut(s) 53, 65, 606, 725
BsmI GAATGC 2 cut(s) 640, 721
BsoBI CYCGRG 2 cut(s) 703, 757
Bsp1286I GDGCHC 1 cut(s) 710
Bsp143I GATC 3 cut(s) 130, 250, 265
BspACI CCGC 2 cut(s) 558, 762
BspCNI CTCAG 3 cut(s) 103, 678, 721
BspLI GGNNCC 4 cut(s) 24, 286, 312, 701
BspPI GGATC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 284
BsrBI CCGCTC 1 cut(s) 762
BsrDI GCAATG 1 cut(s) 673
BsrI ACTGG 2 cut(s) 421, 524
BssECI CCNNGG 2 cut(s) 314, 703
BssMI GATC 3 cut(s) 130, 250, 265
BssNAI GTATAC 1 cut(s) 321
Bst1107I GTATAC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 564
BstDEI CTNAG 4 cut(s) 90, 394, 686, 729
BstF5I GGATG 1 cut(s) 268
BstHHI GCGC 2 cut(s) 40, 525
BstKTI GATC 3 cut(s) 133, 253, 268
BstMAI GTCTC 4 cut(s) 53, 65, 606, 725
BstMBI GATC 3 cut(s) 130, 250, 265
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 316
BstPAI GACNNNNGTC 1 cut(s) 737
BstSCI CCNGG 3 cut(s) 314, 702, 703
BstSFI CTRYAG 2 cut(s) 30, 327
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BstZ17I GTATAC 1 cut(s) 321
BsuI GTATCC 2 cut(s) 406, 461
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 4 cut(s) 253, 302, 520, 652
CaiI CAGNNNCTG 1 cut(s) 519
CfoI GCGC 2 cut(s) 40, 525
Cfr9I CCCGGG 1 cut(s) 703
CseI GACGC 1 cut(s) 136
Csp6I GTAC 4 cut(s) 103, 220, 285, 785
CspCI CAANNNNNGTGG 4 cut(s) 15, 50, 216, 251
CviAII CATG 2 cut(s) 274, 811
CviJI RGCY 8 cut(s) 88, 487, 551, 684, 690, 708, 756, 809
CviKI_1 RGCY 8 cut(s) 88, 487, 551, 684, 690, 708, 756, 809
CviQI GTAC 4 cut(s) 103, 220, 285, 785
DdeI CTNAG 4 cut(s) 90, 394, 686, 729
DpnI GATC 3 cut(s) 132, 252, 267
DpnII GATC 3 cut(s) 130, 250, 265
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 710
Eco32I GATATC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 326
Eco88I CYCGRG 2 cut(s) 703, 757
EcoRII CCWGG 1 cut(s) 314
EcoRV GATATC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 710
FaeI CATG 2 cut(s) 277, 814
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FatI CATG 2 cut(s) 273, 810
FauI CCCGC 1 cut(s) 755
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 1 cut(s) 807
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 710
Fsp4HI GCNGC 1 cut(s) 807
FspBI CTAG 3 cut(s) 80, 500, 663
GlaI GCGC 2 cut(s) 39, 524
GluI GCNGC 1 cut(s) 807
HapII CCGG 1 cut(s) 704
HgaI GACGC 1 cut(s) 136
HhaI GCGC 2 cut(s) 40, 525
Hin1II CATG 2 cut(s) 277, 814
Hin6I GCGC 2 cut(s) 38, 523
HinP1I GCGC 2 cut(s) 38, 523
HinfI GANTC 2 cut(s) 46, 599
HpaII CCGG 1 cut(s) 704
HphI GGTGA 2 cut(s) 572, 733
Hpy166II GTNNAC 3 cut(s) 103, 321, 650
Hpy188I TCNGA 6 cut(s) 93, 152, 164, 448, 730, 795
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 3 cut(s) 103, 321, 650
HpyAV CCTTC 4 cut(s) 253, 301, 427, 790
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 5 cut(s) 277, 292, 660, 719, 775
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 4 cut(s) 90, 394, 686, 729
Hsp92II CATG 2 cut(s) 277, 814
HspAI GCGC 2 cut(s) 38, 523
KpnI GGTACC 1 cut(s) 288
Kzo9I GATC 3 cut(s) 130, 250, 265
MaeI CTAG 3 cut(s) 80, 500, 663
MaeIII GTNAC 3 cut(s) 353, 515, 739
MalI GATC 3 cut(s) 132, 252, 267
MbiI CCGCTC 1 cut(s) 762
MboI GATC 3 cut(s) 130, 250, 265
MboII GAAGA 3 cut(s) 19, 179, 581
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 710
MluCI AATT 3 cut(s) 230, 423, 476
MlyI GAGTC 2 cut(s) 55, 608
MmeI TCCRAC 2 cut(s) 50, 697
MseI TTAA 1 cut(s) 440
MslI CAYNNNNRTG 1 cut(s) 407
MspI CCGG 1 cut(s) 704
MspR9I CCNGG 3 cut(s) 316, 704, 705
MunI CAATTG 1 cut(s) 423
Mva1269I GAATGC 2 cut(s) 640, 721
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 2 cut(s) 704, 705
NdeII GATC 3 cut(s) 130, 250, 265
NlaIII CATG 2 cut(s) 277, 814
NlaIV GGNNCC 4 cut(s) 24, 286, 312, 701
NmuCI GTSAC 2 cut(s) 515, 739
PaeR7I CTCGAG 1 cut(s) 757
PctI GAATGC 2 cut(s) 640, 721
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 1 cut(s) 808
PleI GAGTC 2 cut(s) 54, 607
PpsI GAGTC 2 cut(s) 54, 607
PshAI GACNNNNGTC 1 cut(s) 737
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 4 cut(s) 24, 286, 312, 701
PspXI VCTCGAGB 1 cut(s) 757
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PstNI CAGNNNCTG 1 cut(s) 519
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 4 cut(s) 104, 221, 286, 786
RsaNI GTAC 4 cut(s) 103, 220, 285, 785
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 1 cut(s) 807
Sau3AI GATC 3 cut(s) 130, 250, 265
SchI GAGTC 2 cut(s) 55, 608
ScrFI CCNGG 3 cut(s) 316, 704, 705
SduI GDGCHC 1 cut(s) 710
SfcI CTRYAG 2 cut(s) 30, 327
Sfr274I CTCGAG 1 cut(s) 757
SlaI CTCGAG 1 cut(s) 757
SmaI CCCGGG 1 cut(s) 705
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 2 cut(s) 170, 757
SmoI CTYRAG 2 cut(s) 170, 757
Sse9I AATT 3 cut(s) 230, 423, 476
SsiI CCGC 2 cut(s) 558, 762
SspMI CTAG 3 cut(s) 80, 500, 663
StyD4I CCNGG 3 cut(s) 314, 702, 703
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 2 cut(s) 758, 802
TasI AATT 3 cut(s) 230, 423, 476
TatI WGTACW 2 cut(s) 219, 784
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 4 cut(s) 253, 309, 520, 652
TseFI GTSAC 2 cut(s) 515, 739
TseI GCWGC 1 cut(s) 806
Tsp45I GTSAC 2 cut(s) 515, 739
TspDTI ATGAA 6 cut(s) 130, 288, 582, 635, 642, 728
TspMI CCCGGG 1 cut(s) 703
TspRI CASTG 4 cut(s) 253, 309, 520, 652
Van91I CCANNNNNTGG 1 cut(s) 547
XapI RAATTY 1 cut(s) 230
XhoI CTCGAG 1 cut(s) 757
XmaI CCCGGG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 3 cut(s) 80, 500, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.