Rmu_ssc0000355.1_g000024
ERF Family

Calcineurin-like metallo-phosphoesterase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000355.1
OG0010859
Physical Location & Seq
Reverse (-)
94130 .. 96861
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000355.1_g000024.1.cds

Sequence Viewer

Length: 966 bp
atggagaagaaacgtttatgggttcccactgttgtggcacaagtgtgtctctgctttggtctctaccttgcttttcaactgggtcagcctcagaactctgtgaacctccatagaagaagtgaaagcagagatctttacttcatcagcgtcagaggaggcttcagacctctcaagcaacagacccatcttctcaaacagatggagaaggtggcaaagaagtacaaggcaaagtttgtagtggacatcagtgatcttgggaaagatgatccgctcatgcagaatggtaccctgcatttctcatcattaaaggttccctggtatactactacagtttctggcagatatggagggggttacttccagaagcagataagactaccatccaagaaaaccttagacctcattggtgtggatactgggtcattagaggggaaggttttaatctcgggatcatcaagtgagtttggattcaatcagttacattggctgacaaagacactagaggaaaccagtagtgactggtgcatagttgttggattccacccattggctaaatgtgaagatagtgaagagggaatggaagcaaaccaagtctttgagtctctacatcatagttttatgaaatatgaagtgaatgcatatataagtgggcggggttgcactagcgatgtccaacaaggtactctgagctacgtgttctgcaccttaggtgaaattggattcttgtggtgcatagttgttggattccacccattggctaaatgtgaagatagtgaagagggaatggaagcaaaccaagtctttgagtctctacatcatagttttatgaaatatgaagtgaatgcatatataagtgggcggggatgcactagctatgtccaacaaggtactctgagctacgttgggaacccgggctcaacaaatgcactagcttttgtaaatgagacatcaatatttagtaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

36.01

Weight (kDa)

6.79

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30993 AT4G30993 AT4G30993
fragaria_vesca FvH4_1g01190 FvH4_1g01190
malus_domestica MD02G1010000.v1.1 MD02G1010100.v1.1
prunus_persica Prupe.7G260000_v2.0.a1
pyrus_communis pycom02g00880 pycom15g13910
rosa_chinensis RchiOBHm_Chr2g0085991
rosa_laevigata RLG00000015732
rosa_multiflora Rmu_ssc0000355.1_g000024
rosa_roxburghii Rroxscaffold_2G00154870
rosa_rugosa Rorug01G0464900
rosa_samantha Rh2AG014100 Rh2BG014600 Rh2CG015100 Rh2DG016400
rosa_wichuraiana Rw2G001250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 2 cut(s) 547, 754
AccBSI CCGCTC 1 cut(s) 271
AccI GTMKAC 1 cut(s) 320
AciI CCGC 3 cut(s) 269, 652, 859
AclI AACGTT 1 cut(s) 13
AclWI GGATC 2 cut(s) 260, 457
AcuI CTGAAG 1 cut(s) 145
AfaI GTAC 4 cut(s) 221, 286, 682, 889
AfiI CCNNNNNNNGG 2 cut(s) 547, 754
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 2 cut(s) 77, 472
AjnI CCWGG 1 cut(s) 314
AleI CACNNNNGTG 2 cut(s) 32, 43
AluBI AGCT 4 cut(s) 690, 873, 897, 932
AluI AGCT 4 cut(s) 690, 873, 897, 932
Alw26I GTCTC 5 cut(s) 53, 65, 606, 813, 938
AlwI GGATC 2 cut(s) 260, 457
AlwNI CAGNNNCTG 1 cut(s) 335
Ama87I CYCGRG 2 cut(s) 445, 910
Asp718I GGTACC 1 cut(s) 284
AsuC2I CCSGG 2 cut(s) 911, 912
AsuHPI GGTGA 1 cut(s) 722
AvaI CYCGRG 2 cut(s) 445, 910
AxyI CCTNAGG 1 cut(s) 706
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 917
BccI CCATC 3 cut(s) 192, 193, 388
BciT130I CCWGG 1 cut(s) 316
BciVI GTATCC 1 cut(s) 406
BcnI CCSGG 2 cut(s) 911, 912
BcoDI GTCTC 5 cut(s) 53, 65, 606, 813, 938
BfaI CTAG 4 cut(s) 500, 663, 870, 929
BfmI CTRYAG 1 cut(s) 327
BfuI GTATCC 1 cut(s) 406
BglII AGATCT 1 cut(s) 130
Bme1390I CCNGG 3 cut(s) 316, 911, 912
BmeT110I CYCGRG 2 cut(s) 445, 910
BmiI GGNNCC 4 cut(s) 24, 286, 312, 908
BmrFI CCNGG 3 cut(s) 316, 911, 912
BmrI ACTGGG 2 cut(s) 89, 426
BmsI GCATC 1 cut(s) 854
BmuI ACTGGG 2 cut(s) 89, 426
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 911, 912
BsaAI YACGTR 1 cut(s) 694
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 314, 910
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 754
Bse1I ACTGG 4 cut(s) 84, 421, 510, 524
Bse21I CCTNAGG 1 cut(s) 706
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 2 cut(s) 314, 910
BseGI GGATG 2 cut(s) 380, 869
BseLI CCNNNNNNNGG 2 cut(s) 547, 754
BseMII CTCAG 3 cut(s) 104, 677, 884
BseNI ACTGG 4 cut(s) 84, 421, 510, 524
BseRI GAGGAG 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 685
BshNI GGYRCC 1 cut(s) 284
BsiHKCI CYCGRG 2 cut(s) 445, 910
BsiSI CCGG 1 cut(s) 911
BslI CCNNNNNNNGG 2 cut(s) 547, 754
BsmAI GTCTC 5 cut(s) 53, 65, 606, 813, 938
BsmI GAATGC 2 cut(s) 640, 847
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 2 cut(s) 445, 910
Bsp1286I GDGCHC 1 cut(s) 917
Bsp143I GATC 4 cut(s) 130, 250, 265, 449
BspACI CCGC 3 cut(s) 269, 652, 859
BspCNI CTCAG 3 cut(s) 103, 678, 885
BspLI GGNNCC 4 cut(s) 24, 286, 312, 908
BspPI GGATC 2 cut(s) 260, 457
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 271
BsrI ACTGG 4 cut(s) 84, 421, 510, 524
BssECI CCNNGG 2 cut(s) 314, 910
BssMI GATC 4 cut(s) 130, 250, 265, 449
BssNAI GTATAC 1 cut(s) 321
Bst1107I GTATAC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 31, 331
Bst6I CTCTTC 2 cut(s) 564, 771
BstBAI YACGTR 1 cut(s) 694
BstDEI CTNAG 5 cut(s) 90, 394, 686, 706, 893
BstF5I GGATG 2 cut(s) 380, 869
BstKTI GATC 4 cut(s) 133, 253, 268, 452
BstMAI GTCTC 5 cut(s) 53, 65, 606, 813, 938
BstMBI GATC 4 cut(s) 130, 250, 265, 449
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 3 cut(s) 314, 909, 910
BstSFI CTRYAG 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 34
BstYI RGATCY 1 cut(s) 130
BstZ17I GTATAC 1 cut(s) 321
Bsu36I CCTNAGG 1 cut(s) 706
BsuI GTATCC 1 cut(s) 406
BtgZI GCGATG 1 cut(s) 681
BtsCI GGATG 2 cut(s) 380, 869
BtsIMutI CAGTG 2 cut(s) 27, 253
CaiI CAGNNNCTG 1 cut(s) 335
Cfr9I CCCGGG 1 cut(s) 910
CseI GACGC 1 cut(s) 136
Csp6I GTAC 4 cut(s) 220, 285, 681, 888
CviAII CATG 1 cut(s) 274
CviQI GTAC 4 cut(s) 220, 285, 681, 888
DdeI CTNAG 5 cut(s) 90, 394, 686, 706, 893
DpnI GATC 4 cut(s) 132, 252, 267, 451
DpnII GATC 4 cut(s) 130, 250, 265, 449
Eam1104I CTCTTC 2 cut(s) 564, 771
EarI CTCTTC 2 cut(s) 564, 771
Eco24I GRGCYC 1 cut(s) 917
Eco31I GGTCTC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 706
Eco88I CYCGRG 2 cut(s) 445, 910
EcoRII CCWGG 1 cut(s) 314
EcoT22I ATGCAT 2 cut(s) 640, 847
EcoT38I GRGCYC 1 cut(s) 917
FaeI CATG 1 cut(s) 277
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FatI CATG 1 cut(s) 273
FauI CCCGC 2 cut(s) 645, 852
FblI GTMKAC 1 cut(s) 320
FokI GGATG 2 cut(s) 367, 876
FriOI GRGCYC 1 cut(s) 917
FspBI CTAG 4 cut(s) 500, 663, 870, 929
HapII CCGG 1 cut(s) 911
HgaI GACGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 277
HinfI GANTC 6 cut(s) 468, 537, 599, 720, 744, 806
HpaII CCGG 1 cut(s) 911
HphI GGTGA 1 cut(s) 722
Hpy166II GTNNAC 3 cut(s) 103, 241, 321
Hpy188I TCNGA 5 cut(s) 93, 152, 164, 687, 894
Hpy188III TCNNGA 2 cut(s) 361, 447
Hpy8I GTNNAC 3 cut(s) 103, 241, 321
HpyAV CCTTC 2 cut(s) 199, 427
HpyCH4III ACNGT 2 cut(s) 31, 331
HpyCH4IV ACGT 3 cut(s) 13, 693, 900
HpyF3I CTNAG 5 cut(s) 90, 394, 686, 706, 893
HpySE526I ACGT 3 cut(s) 13, 693, 900
Hsp92II CATG 1 cut(s) 277
KpnI GGTACC 1 cut(s) 288
Kzo9I GATC 4 cut(s) 130, 250, 265, 449
LweI GCATC 1 cut(s) 854
MaeI CTAG 4 cut(s) 500, 663, 870, 929
MaeII ACGT 3 cut(s) 13, 693, 900
MaeIII GTNAC 3 cut(s) 353, 477, 515
MalI GATC 4 cut(s) 132, 252, 267, 451
MbiI CCGCTC 1 cut(s) 271
MboI GATC 4 cut(s) 130, 250, 265, 449
MboII GAAGA 7 cut(s) 19, 126, 179, 572, 581, 779, 788
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 917
MluCI AATT 1 cut(s) 714
MlyI GAGTC 2 cut(s) 608, 815
MmeI TCCRAC 4 cut(s) 514, 697, 721, 904
Mph1103I ATGCAT 2 cut(s) 640, 847
MseI TTAA 2 cut(s) 305, 440
MslI CAYNNNNRTG 3 cut(s) 32, 43, 407
MspI CCGG 1 cut(s) 911
MspR9I CCNGG 3 cut(s) 316, 911, 912
Mva1269I GAATGC 2 cut(s) 640, 847
MvaI CCWGG 1 cut(s) 316
NciI CCSGG 2 cut(s) 911, 912
NdeII GATC 4 cut(s) 130, 250, 265, 449
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 4 cut(s) 24, 286, 312, 908
NmuCI GTSAC 1 cut(s) 515
NsiI ATGCAT 2 cut(s) 640, 847
OliI CACNNNNGTG 2 cut(s) 32, 43
PctI GAATGC 2 cut(s) 640, 847
PfeI GAWTC 4 cut(s) 468, 537, 720, 744
PflMI CCANNNNNTGG 2 cut(s) 547, 754
PleI GAGTC 2 cut(s) 607, 814
PpsI GAGTC 2 cut(s) 607, 814
Ppu21I YACGTR 1 cut(s) 694
Psp1406I AACGTT 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 4 cut(s) 24, 286, 312, 908
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 4 cut(s) 221, 286, 682, 889
RsaNI GTAC 4 cut(s) 220, 285, 681, 888
RseI CAYNNNNRTG 3 cut(s) 32, 43, 407
SaqAI TTAA 2 cut(s) 305, 440
Sau3AI GATC 4 cut(s) 130, 250, 265, 449
SchI GAGTC 2 cut(s) 608, 815
ScrFI CCNGG 3 cut(s) 316, 911, 912
SduI GDGCHC 1 cut(s) 917
SfaNI GCATC 1 cut(s) 854
SfcI CTRYAG 1 cut(s) 327
SmaI CCCGGG 1 cut(s) 912
SmiMI CAYNNNNRTG 3 cut(s) 32, 43, 407
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 714
SsiI CCGC 3 cut(s) 269, 652, 859
SspI AATATT 1 cut(s) 954
SspMI CTAG 4 cut(s) 500, 663, 870, 929
StyD4I CCNGG 3 cut(s) 314, 909, 910
TaaI ACNGT 2 cut(s) 31, 331
TaiI ACGT 3 cut(s) 16, 696, 903
TasI AATT 1 cut(s) 714
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 4 cut(s) 468, 537, 720, 744
Tru1I TTAA 2 cut(s) 305, 440
Tru9I TTAA 2 cut(s) 305, 440
TscAI CASTG 2 cut(s) 34, 253
TseFI GTSAC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 5 cut(s) 130, 635, 642, 842, 849
TspMI CCCGGG 1 cut(s) 910
TspRI CASTG 2 cut(s) 34, 253
Van91I CCANNNNNTGG 2 cut(s) 547, 754
XmaI CCCGGG 1 cut(s) 910
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 4 cut(s) 500, 663, 870, 929
Zsp2I ATGCAT 2 cut(s) 640, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.