Rh2DG016400
ERF Family

Calcineurin-like metallo-phosphoesterase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010859
Physical Location & Seq
Forward (+)
945556 .. 948484
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG016400.1

Sequence Viewer

Length: 684 bp
ATGGAGAAGGTGGCAAAGAAGTACAAGGCAAAGTTTGTAGTGGACATCAGTGATCTTGGGAAAGATGATCCGCTCATGCAGAATGGTACCCTGCATTTCTCATCATTAAAGGTTCCCTGGTATACTACTACAGTTTCAGGCAGATATGGAGGGGGTTACTTCCAGAAGCAGATAAGACTACCTTCCAAGAAAACCTTAGACCTCATTGGTGTGGATACTGGGTCATTAGAGGGGAAGGTTTTAATCTCGGGATCATCAAGTGAGTTTGGATTCAATCAGTTACATTGGCTGACAAAGACACTAGAGGAAACCAGTAGTGACTGGTGCATAGTTGTTGGATTCCACCCATTGGCTAAATGTGAAGATAGTGAAGAGGGAATGGAAGCAAACCAAGTCTTTGAGTCTCTACATCGTAGTTTTATGAAATATGAAGTGAATGCATATATAAGTGGGCGGGGTTGCACTAGCGATGTCCAACAAGGTACTCTGAGCTACATTGGGAACCCGGGCTCAACAAATGCACTAGCTTTTGTAAATGAGACATCAATATTTAGTAGAGAACTGGAGGTCGAGTTTCTTCTTCACAGAGTCAGCTCGCTAGAAATTGTAACCTACTTTGTTAGCTTGAATGGGGAAGTAGTGCATAAATCTGTACTCCATCAGAAGGGTAAAGCAGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.24

Weight (kDa)

6.17

Isoelectric Point (pI)

18.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30993 AT4G30993 AT4G30993
fragaria_vesca FvH4_1g01190 FvH4_1g01190
malus_domestica MD02G1010000.v1.1 MD02G1010100.v1.1
prunus_persica Prupe.7G260000_v2.0.a1
pyrus_communis pycom02g00880 pycom15g13910
rosa_chinensis RchiOBHm_Chr2g0085991
rosa_laevigata RLG00000015732
rosa_multiflora Rmu_ssc0000355.1_g000024
rosa_roxburghii Rroxscaffold_2G00154870
rosa_rugosa Rorug01G0464900
rosa_samantha Rh2AG014100 Rh2BG014600 Rh2CG015100 Rh2DG016400
rosa_wichuraiana Rw2G001250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 349
AccBSI CCGCTC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 122
AciI CCGC 2 cut(s) 71, 454
AclWI GGATC 2 cut(s) 62, 259
AfaI GTAC 4 cut(s) 23, 88, 484, 654
AfiI CCNNNNNNNGG 2 cut(s) 349, 664
AgsI TTSAA 2 cut(s) 274, 628
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 4 cut(s) 492, 527, 594, 624
AluI AGCT 4 cut(s) 492, 527, 594, 624
Alw26I GTCTC 2 cut(s) 408, 533
AlwI GGATC 2 cut(s) 62, 259
Ama87I CYCGRG 2 cut(s) 247, 505
Asp718I GGTACC 1 cut(s) 86
AsuC2I CCSGG 2 cut(s) 506, 507
AvaI CYCGRG 2 cut(s) 247, 505
BanI GGYRCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 512
BccI CCATC 1 cut(s) 666
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 208
BcnI CCSGG 2 cut(s) 506, 507
BcoDI GTCTC 2 cut(s) 408, 533
BfaI CTAG 4 cut(s) 302, 465, 524, 599
BfmI CTRYAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 208
Bme1390I CCNGG 3 cut(s) 118, 506, 507
BmeT110I CYCGRG 2 cut(s) 247, 505
BmiI GGNNCC 3 cut(s) 88, 114, 503
BmrFI CCNGG 3 cut(s) 118, 506, 507
BmrI ACTGGG 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 584
BpuMI CCSGG 2 cut(s) 506, 507
BsaJI CCNNGG 2 cut(s) 116, 505
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 664
Bse1I ACTGG 4 cut(s) 223, 312, 326, 567
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 116, 505
BseLI CCNNNNNNNGG 2 cut(s) 349, 664
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 4 cut(s) 223, 312, 326, 567
BshNI GGYRCC 1 cut(s) 86
BsiHKCI CYCGRG 2 cut(s) 247, 505
BsiSI CCGG 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 349, 664
BsmAI GTCTC 2 cut(s) 408, 533
BsmI GAATGC 1 cut(s) 442
BsoBI CYCGRG 2 cut(s) 247, 505
Bsp1286I GDGCHC 1 cut(s) 512
Bsp143I GATC 3 cut(s) 52, 67, 251
BspACI CCGC 2 cut(s) 71, 454
BspCNI CTCAG 1 cut(s) 480
BspLI GGNNCC 3 cut(s) 88, 114, 503
BspPI GGATC 2 cut(s) 62, 259
BspT107I GGYRCC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 73
BsrI ACTGG 4 cut(s) 223, 312, 326, 567
BssECI CCNNGG 2 cut(s) 116, 505
BssMI GATC 3 cut(s) 52, 67, 251
BssNAI GTATAC 1 cut(s) 123
Bst1107I GTATAC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 596
BstDEI CTNAG 2 cut(s) 196, 488
BstKTI GATC 3 cut(s) 55, 70, 254
BstMAI GTCTC 2 cut(s) 408, 533
BstMBI GATC 3 cut(s) 52, 67, 251
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 116, 504, 505
BstSFI CTRYAG 1 cut(s) 129
BstZ17I GTATAC 1 cut(s) 123
BsuI GTATCC 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 596
Cfr9I CCCGGG 1 cut(s) 505
Csp6I GTAC 4 cut(s) 22, 87, 483, 653
CviAII CATG 2 cut(s) 76, 679
CviJI RGCY 7 cut(s) 289, 353, 492, 510, 527, 594, 624
CviKI_1 RGCY 7 cut(s) 289, 353, 492, 510, 527, 594, 624
CviQI GTAC 4 cut(s) 22, 87, 483, 653
DdeI CTNAG 2 cut(s) 196, 488
DpnI GATC 3 cut(s) 54, 69, 253
DpnII GATC 3 cut(s) 52, 67, 251
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 512
Eco88I CYCGRG 2 cut(s) 247, 505
EcoRII CCWGG 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 512
FaeI CATG 2 cut(s) 79, 682
FalI AAGNNNNNCTT 4 cut(s) 166, 198, 179, 211
FatI CATG 2 cut(s) 75, 678
FauI CCCGC 1 cut(s) 447
FblI GTMKAC 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 512
FspBI CTAG 4 cut(s) 302, 465, 524, 599
GsuI CTGGAG 1 cut(s) 584
HapII CCGG 1 cut(s) 506
Hin1II CATG 2 cut(s) 79, 682
HinfI GANTC 4 cut(s) 270, 339, 401, 588
HpaII CCGG 1 cut(s) 506
Hpy166II GTNNAC 2 cut(s) 43, 123
Hpy188I TCNGA 2 cut(s) 489, 663
Hpy188III TCNNGA 2 cut(s) 163, 249
Hpy8I GTNNAC 2 cut(s) 43, 123
HpyAV CCTTC 3 cut(s) 192, 229, 658
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 7 cut(s) 79, 94, 327, 440, 462, 521, 643
HpyF3I CTNAG 2 cut(s) 196, 488
Hsp92II CATG 2 cut(s) 79, 682
KpnI GGTACC 1 cut(s) 90
Kzo9I GATC 3 cut(s) 52, 67, 251
MaeI CTAG 4 cut(s) 302, 465, 524, 599
MaeIII GTNAC 4 cut(s) 155, 279, 317, 607
MalI GATC 3 cut(s) 54, 69, 253
MbiI CCGCTC 1 cut(s) 73
MboI GATC 3 cut(s) 52, 67, 251
MboII GAAGA 4 cut(s) 374, 383, 569, 572
MhlI GDGCHC 1 cut(s) 512
MluCI AATT 1 cut(s) 603
MlyI GAGTC 2 cut(s) 410, 597
MmeI TCCRAC 2 cut(s) 316, 499
MnlI CCTC 6 cut(s) 143, 212, 223, 298, 367, 559
Mph1103I ATGCAT 1 cut(s) 442
MseI TTAA 2 cut(s) 107, 242
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 3 cut(s) 118, 506, 507
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 1 cut(s) 118
NciI CCSGG 2 cut(s) 506, 507
NdeII GATC 3 cut(s) 52, 67, 251
NlaIII CATG 2 cut(s) 79, 682
NlaIV GGNNCC 3 cut(s) 88, 114, 503
NmuCI GTSAC 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 442
PctI GAATGC 1 cut(s) 442
PfeI GAWTC 2 cut(s) 270, 339
PflMI CCANNNNNTGG 1 cut(s) 349
PleI GAGTC 2 cut(s) 409, 596
PpsI GAGTC 2 cut(s) 409, 596
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 88, 114, 503
RsaI GTAC 4 cut(s) 23, 88, 484, 654
RsaNI GTAC 4 cut(s) 22, 87, 483, 653
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 2 cut(s) 107, 242
Sau3AI GATC 3 cut(s) 52, 67, 251
SchI GAGTC 2 cut(s) 410, 597
ScrFI CCNGG 3 cut(s) 118, 506, 507
SduI GDGCHC 1 cut(s) 512
SfcI CTRYAG 1 cut(s) 129
SmaI CCCGGG 1 cut(s) 507
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 1 cut(s) 603
SsiI CCGC 2 cut(s) 71, 454
SspI AATATT 1 cut(s) 549
SspMI CTAG 4 cut(s) 302, 465, 524, 599
StyD4I CCNGG 3 cut(s) 116, 504, 505
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 570
TasI AATT 1 cut(s) 603
TatI WGTACW 2 cut(s) 21, 652
TfiI GAWTC 2 cut(s) 270, 339
Tru1I TTAA 2 cut(s) 107, 242
Tru9I TTAA 2 cut(s) 107, 242
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 437, 444
TspMI CCCGGG 1 cut(s) 505
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 349
XmaI CCCGGG 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 4 cut(s) 302, 465, 524, 599
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.