Rh2BG014600
ERF Family

Calcineurin-like metallo-phosphoesterase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010859
Physical Location & Seq
Forward (+)
1089717 .. 1092881
3165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG014600.1

Sequence Viewer

Length: 759 bp
ATGGAGAAGAAACGTTTATGGGTTCCCACTATTGTGGCACAAGTGTGTCTCTGCTTTGGTCTCTACCTTGCTTTTCAACTGGGTCAGCTTCAGAACTCTGTGAACCTCCATAGAAGAAGTGAAAGCAGAGATCTTTACTTCATCAGCGTCAGAGGAGGCTTCAGACCTCTCAAGCAACAGACCCATCTTCTCAAACTGATGGAGAAGGTGGCAAAGAAGTACAAGGCAAAGTTTGTAGTGGACATCAGTGATCTTGGGAAAGATGATCCGCTCATGCAGAATGGTACCCTGCATTTCTCATCATTAAAGGTTCCCTGGTATACTACTACAGTTTCAGGCAGATATGGAGGGGGTTACTTCCAGAAGCAGATAAGACTACCTTACGAGAAAACCTTAGACCTCATTGGTGTGGATACTGGGTCATTAGAGGGGAAGGTTTTAATCTCGGGATCATCAAGTGAGTTTGGATTCAATCAGTTACATTGGCTGACAAGGACACTAGAGGAAACCAGTAGTGACTGGTGCATAGTTGTTGGATTCCACCCATTGGCTAAATGTGAAGGTAGTGAAGAGGGAATGGAAGCAAAGCAAGTCTTTGAGTCTCTACATCATAGTTTTATGAAATATGAAGTGAATGCATATATAAGTGGGCGGGGTTGCACTAGCGATGTCCAACAAGGTACTCTGAGCTACATTGGGAACCCAGGCTCAACAAATGCACTAGCTTTTGTAAATGAGACATCAATATTTAGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

28.36

Weight (kDa)

8.71

Isoelectric Point (pI)

26.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30993 AT4G30993 AT4G30993
fragaria_vesca FvH4_1g01190 FvH4_1g01190
malus_domestica MD02G1010000.v1.1 MD02G1010100.v1.1
prunus_persica Prupe.7G260000_v2.0.a1
pyrus_communis pycom02g00880 pycom15g13910
rosa_chinensis RchiOBHm_Chr2g0085991
rosa_laevigata RLG00000015732
rosa_multiflora Rmu_ssc0000355.1_g000024
rosa_roxburghii Rroxscaffold_2G00154870
rosa_rugosa Rorug01G0464900
rosa_samantha Rh2AG014100 Rh2BG014600 Rh2CG015100 Rh2DG016400
rosa_wichuraiana Rw2G001250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 547
AccBSI CCGCTC 1 cut(s) 271
AccI GTMKAC 1 cut(s) 320
AciI CCGC 2 cut(s) 269, 652
AclI AACGTT 1 cut(s) 13
AclWI GGATC 2 cut(s) 260, 457
AcuI CTGAAG 2 cut(s) 74, 145
AfaI GTAC 3 cut(s) 221, 286, 682
AfiI CCNNNNNNNGG 1 cut(s) 547
AgsI TTSAA 2 cut(s) 77, 472
AjnI CCWGG 2 cut(s) 314, 703
AleI CACNNNNGTG 2 cut(s) 32, 43
AluBI AGCT 3 cut(s) 88, 690, 725
AluI AGCT 3 cut(s) 88, 690, 725
Alw26I GTCTC 4 cut(s) 53, 65, 606, 731
AlwI GGATC 2 cut(s) 260, 457
Ama87I CYCGRG 1 cut(s) 445
Asp718I GGTACC 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 445
BanI GGYRCC 1 cut(s) 284
BccI CCATC 2 cut(s) 192, 193
BciT130I CCWGG 2 cut(s) 316, 705
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 4 cut(s) 53, 65, 606, 731
BfaI CTAG 3 cut(s) 500, 663, 722
BfmI CTRYAG 1 cut(s) 327
BfuI GTATCC 1 cut(s) 406
BglII AGATCT 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 316, 705
BmeT110I CYCGRG 1 cut(s) 445
BmiI GGNNCC 4 cut(s) 24, 286, 312, 701
BmrFI CCNGG 2 cut(s) 316, 705
BmrI ACTGGG 2 cut(s) 89, 426
BmuI ACTGGG 2 cut(s) 89, 426
BpuEI CTTGAG 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 314, 703
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse1I ACTGG 4 cut(s) 84, 421, 510, 524
BseBI CCWGG 2 cut(s) 316, 705
BseDI CCNNGG 2 cut(s) 314, 703
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMII CTCAG 1 cut(s) 677
BseNI ACTGG 4 cut(s) 84, 421, 510, 524
BseRI GAGGAG 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 445
BslI CCNNNNNNNGG 1 cut(s) 547
BsmAI GTCTC 4 cut(s) 53, 65, 606, 731
BsmI GAATGC 1 cut(s) 640
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 445
Bsp143I GATC 4 cut(s) 130, 250, 265, 449
BspACI CCGC 2 cut(s) 269, 652
BspCNI CTCAG 1 cut(s) 678
BspLI GGNNCC 4 cut(s) 24, 286, 312, 701
BspPI GGATC 2 cut(s) 260, 457
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 271
BsrI ACTGG 4 cut(s) 84, 421, 510, 524
BssECI CCNNGG 2 cut(s) 314, 703
BssMI GATC 4 cut(s) 130, 250, 265, 449
BssNAI GTATAC 1 cut(s) 321
Bst1107I GTATAC 1 cut(s) 321
Bst2UI CCWGG 2 cut(s) 316, 705
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 564
BstDEI CTNAG 2 cut(s) 394, 686
BstKTI GATC 4 cut(s) 133, 253, 268, 452
BstMAI GTCTC 4 cut(s) 53, 65, 606, 731
BstMBI GATC 4 cut(s) 130, 250, 265, 449
BstNI CCWGG 2 cut(s) 316, 705
BstSCI CCNGG 2 cut(s) 314, 703
BstSFI CTRYAG 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 34
BstYI RGATCY 1 cut(s) 130
BstZ17I GTATAC 1 cut(s) 321
BsuI GTATCC 1 cut(s) 406
BtgZI GCGATG 1 cut(s) 681
BtsIMutI CAGTG 1 cut(s) 253
CseI GACGC 1 cut(s) 136
Csp6I GTAC 3 cut(s) 220, 285, 681
CviAII CATG 1 cut(s) 274
CviJI RGCY 7 cut(s) 88, 159, 487, 551, 690, 708, 725
CviKI_1 RGCY 7 cut(s) 88, 159, 487, 551, 690, 708, 725
CviQI GTAC 3 cut(s) 220, 285, 681
DdeI CTNAG 2 cut(s) 394, 686
DpnI GATC 4 cut(s) 132, 252, 267, 451
DpnII GATC 4 cut(s) 130, 250, 265, 449
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco31I GGTCTC 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 74, 145
Eco88I CYCGRG 1 cut(s) 445
EcoRII CCWGG 2 cut(s) 314, 703
EcoT22I ATGCAT 1 cut(s) 640
FaeI CATG 1 cut(s) 277
FalI AAGNNNNNCTT 4 cut(s) 364, 396, 578, 610
FatI CATG 1 cut(s) 273
FauI CCCGC 1 cut(s) 645
FblI GTMKAC 1 cut(s) 320
FspBI CTAG 3 cut(s) 500, 663, 722
HgaI GACGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 277
HinfI GANTC 3 cut(s) 468, 537, 599
Hpy166II GTNNAC 3 cut(s) 103, 241, 321
Hpy188I TCNGA 4 cut(s) 93, 152, 164, 687
Hpy188III TCNNGA 2 cut(s) 361, 447
Hpy8I GTNNAC 3 cut(s) 103, 241, 321
HpyAV CCTTC 3 cut(s) 199, 427, 554
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 6 cut(s) 277, 292, 525, 638, 660, 719
HpyF3I CTNAG 2 cut(s) 394, 686
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 1 cut(s) 277
KpnI GGTACC 1 cut(s) 288
Kzo9I GATC 4 cut(s) 130, 250, 265, 449
MaeI CTAG 3 cut(s) 500, 663, 722
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 3 cut(s) 353, 477, 515
MalI GATC 4 cut(s) 132, 252, 267, 451
MbiI CCGCTC 1 cut(s) 271
MboI GATC 4 cut(s) 130, 250, 265, 449
MboII GAAGA 4 cut(s) 19, 126, 179, 581
MflI RGATCY 1 cut(s) 130
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 2 cut(s) 514, 697
MnlI CCTC 9 cut(s) 116, 146, 149, 177, 341, 410, 421, 496, 565
Mph1103I ATGCAT 1 cut(s) 640
MseI TTAA 2 cut(s) 305, 440
MslI CAYNNNNRTG 3 cut(s) 32, 43, 407
MspR9I CCNGG 2 cut(s) 316, 705
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 2 cut(s) 316, 705
NdeII GATC 4 cut(s) 130, 250, 265, 449
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 4 cut(s) 24, 286, 312, 701
NmuCI GTSAC 1 cut(s) 515
NsiI ATGCAT 1 cut(s) 640
OliI CACNNNNGTG 2 cut(s) 32, 43
PctI GAATGC 1 cut(s) 640
PfeI GAWTC 2 cut(s) 468, 537
PflMI CCANNNNNTGG 1 cut(s) 547
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
Psp1406I AACGTT 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 314, 703
PspGI CCWGG 2 cut(s) 314, 703
PspN4I GGNNCC 4 cut(s) 24, 286, 312, 701
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 3 cut(s) 221, 286, 682
RsaNI GTAC 3 cut(s) 220, 285, 681
RseI CAYNNNNRTG 3 cut(s) 32, 43, 407
SaqAI TTAA 2 cut(s) 305, 440
Sau3AI GATC 4 cut(s) 130, 250, 265, 449
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 2 cut(s) 316, 705
SfcI CTRYAG 1 cut(s) 327
SmiMI CAYNNNNRTG 3 cut(s) 32, 43, 407
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SsiI CCGC 2 cut(s) 269, 652
SspI AATATT 1 cut(s) 747
SspMI CTAG 3 cut(s) 500, 663, 722
StyD4I CCNGG 2 cut(s) 314, 703
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 16
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 2 cut(s) 468, 537
Tru1I TTAA 2 cut(s) 305, 440
Tru9I TTAA 2 cut(s) 305, 440
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 3 cut(s) 130, 635, 642
TspRI CASTG 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 547
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 3 cut(s) 500, 663, 722
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.