Rh2AG014100
ERF Family

Calcineurin-like metallo-phosphoesterase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010859
Physical Location & Seq
Forward (+)
1108566 .. 1111988
3423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG014100.1

Sequence Viewer

Length: 729 bp
ATGGTATTGTCTGCATTGGAATCTTCTTTGCGCTTTAAACAAAAGATGGAGAAGGTGGCAAAGAAGTACAAGGCAAAGTTTGTAGTGGACATCAGTGACCTTGGGAAAGATGATCCGCTCATGCAGAATGGTACCCTGCATTTCTCATCATTAAAGGTTCCCTGGTATACTACTACAGTTTCAGGCAGATATGGAGGGGGTTACTTCCAGAAGCAGATAAGACTACCTTCCAAGAAAACCTTAGACCTCATTGGTGTGGATACTGGGTCATTAGAGGGGAAGGTTTTAATCTCGGGATCATCAAGTGAGTTTGGATTCAATCAGTTACGTTGGCTGACAAAGACACTAGAGGAAACCAGTAGTGACTGGTGCATAGTTGTTGGATTCCACCCATTGGCTAAATGTGAAGATAGTGAAGAGGGAATGGAAGCAAACCAAGTCTTTGAGTCTCTACATCATAGTTTTATGAAATATGAAGTGAATGCATATATAAGTGGGCAGGGTTGCACTAGCGATGTCCAACAAGGTACTCTGAGCTACATTGGGAACCCCGGCTCAACAAATGCACTAGCTTTTGTAAATGAGACATCAATATTTAGTAGAGAACTGGAGGTCGAGTTTCTTCTTCACAGAGTCAGCTCGCTAGAAATTGTAACCTACTTTGTTAGCTTGAATGGGGAAGTAGTGCATAAATCTGTACTCCATCAGAAGGGTAAAGCAGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.93

Weight (kDa)

6.39

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30993 AT4G30993 AT4G30993
fragaria_vesca FvH4_1g01190 FvH4_1g01190
malus_domestica MD02G1010000.v1.1 MD02G1010100.v1.1
prunus_persica Prupe.7G260000_v2.0.a1
pyrus_communis pycom02g00880 pycom15g13910
rosa_chinensis RchiOBHm_Chr2g0085991
rosa_laevigata RLG00000015732
rosa_multiflora Rmu_ssc0000355.1_g000024
rosa_roxburghii Rroxscaffold_2G00154870
rosa_rugosa Rorug01G0464900
rosa_samantha Rh2AG014100 Rh2BG014600 Rh2CG015100 Rh2DG016400
rosa_wichuraiana Rw2G001250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 394
AccBSI CCGCTC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 167
AciI CCGC 1 cut(s) 116
AclWI GGATC 2 cut(s) 107, 304
AfaI GTAC 4 cut(s) 68, 133, 529, 699
AfiI CCNNNNNNNGG 2 cut(s) 394, 709
AgsI TTSAA 2 cut(s) 319, 673
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 4 cut(s) 537, 572, 639, 669
AluI AGCT 4 cut(s) 537, 572, 639, 669
Alw26I GTCTC 2 cut(s) 453, 578
AlwI GGATC 2 cut(s) 107, 304
Ama87I CYCGRG 1 cut(s) 292
Asp718I GGTACC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 33
AsuC2I CCSGG 1 cut(s) 552
AvaI CYCGRG 1 cut(s) 292
BanI GGYRCC 1 cut(s) 131
BccI CCATC 2 cut(s) 40, 711
BciT130I CCWGG 1 cut(s) 163
BciVI GTATCC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 552
BcoDI GTCTC 2 cut(s) 453, 578
BfaI CTAG 4 cut(s) 347, 510, 569, 644
BfmI CTRYAG 1 cut(s) 174
BfuI GTATCC 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 163, 552
BmeT110I CYCGRG 1 cut(s) 292
BmiI GGNNCC 3 cut(s) 133, 159, 548
BmrFI CCNGG 2 cut(s) 163, 552
BmrI ACTGGG 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 629
BpuMI CCSGG 1 cut(s) 552
BsaJI CCNNGG 3 cut(s) 100, 161, 550
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 709
Bse1I ACTGG 4 cut(s) 268, 357, 371, 612
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 3 cut(s) 100, 161, 550
BseLI CCNNNNNNNGG 2 cut(s) 394, 709
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 4 cut(s) 268, 357, 371, 612
BshNI GGYRCC 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 1 cut(s) 552
BslI CCNNNNNNNGG 2 cut(s) 394, 709
BsmAI GTCTC 2 cut(s) 453, 578
BsmI GAATGC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 292
Bsp143I GATC 2 cut(s) 112, 296
BspACI CCGC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 525
BspLI GGNNCC 3 cut(s) 133, 159, 548
BspPI GGATC 2 cut(s) 107, 304
BspT107I GGYRCC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 118
BsrI ACTGG 4 cut(s) 268, 357, 371, 612
BssECI CCNNGG 3 cut(s) 100, 161, 550
BssMI GATC 2 cut(s) 112, 296
BssNAI GTATAC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 100
Bst1107I GTATAC 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 2 cut(s) 241, 533
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 2 cut(s) 115, 299
BstMAI GTCTC 2 cut(s) 453, 578
BstMBI GATC 2 cut(s) 112, 296
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 161, 550
BstSFI CTRYAG 1 cut(s) 174
BstZ17I GTATAC 1 cut(s) 168
BsuI GTATCC 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 528
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 641
CfoI GCGC 1 cut(s) 33
Csp6I GTAC 4 cut(s) 67, 132, 528, 698
CviAII CATG 2 cut(s) 121, 724
CviJI RGCY 7 cut(s) 334, 398, 537, 555, 572, 639, 669
CviKI_1 RGCY 7 cut(s) 334, 398, 537, 555, 572, 639, 669
CviQI GTAC 4 cut(s) 67, 132, 528, 698
DdeI CTNAG 2 cut(s) 241, 533
DpnI GATC 2 cut(s) 114, 298
DpnII GATC 2 cut(s) 112, 296
DraI TTTAAA 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 124, 727
FalI AAGNNNNNCTT 4 cut(s) 211, 243, 224, 256
FatI CATG 2 cut(s) 120, 723
FblI GTMKAC 1 cut(s) 167
FspBI CTAG 4 cut(s) 347, 510, 569, 644
GlaI GCGC 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 629
HapII CCGG 1 cut(s) 552
HhaI GCGC 1 cut(s) 33
Hin1II CATG 2 cut(s) 124, 727
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 5 cut(s) 20, 315, 384, 446, 633
HpaII CCGG 1 cut(s) 552
Hpy166II GTNNAC 2 cut(s) 88, 168
Hpy188I TCNGA 2 cut(s) 534, 708
Hpy188III TCNNGA 2 cut(s) 208, 294
Hpy8I GTNNAC 2 cut(s) 88, 168
HpyAV CCTTC 4 cut(s) 46, 237, 274, 703
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 8 cut(s) 14, 124, 139, 372, 485, 507, 566, 688
HpyF3I CTNAG 2 cut(s) 241, 533
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 2 cut(s) 124, 727
HspAI GCGC 1 cut(s) 31
KpnI GGTACC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 112, 296
MaeI CTAG 4 cut(s) 347, 510, 569, 644
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 5 cut(s) 95, 200, 324, 362, 652
MalI GATC 2 cut(s) 114, 298
MbiI CCGCTC 1 cut(s) 118
MboI GATC 2 cut(s) 112, 296
MboII GAAGA 5 cut(s) 15, 419, 428, 614, 617
MluCI AATT 1 cut(s) 648
MlyI GAGTC 2 cut(s) 455, 642
MmeI TCCRAC 2 cut(s) 361, 544
MnlI CCTC 6 cut(s) 188, 257, 268, 343, 412, 604
Mph1103I ATGCAT 1 cut(s) 487
MseI TTAA 3 cut(s) 36, 152, 287
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 1 cut(s) 552
MspR9I CCNGG 2 cut(s) 163, 552
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 1 cut(s) 163
NciI CCSGG 1 cut(s) 552
NdeII GATC 2 cut(s) 112, 296
NlaIII CATG 2 cut(s) 124, 727
NlaIV GGNNCC 3 cut(s) 133, 159, 548
NmuCI GTSAC 2 cut(s) 95, 362
NsiI ATGCAT 1 cut(s) 487
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 3 cut(s) 20, 315, 384
PflMI CCANNNNNTGG 1 cut(s) 394
PleI GAGTC 2 cut(s) 454, 641
PpsI GAGTC 2 cut(s) 454, 641
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 3 cut(s) 133, 159, 548
RsaI GTAC 4 cut(s) 68, 133, 529, 699
RsaNI GTAC 4 cut(s) 67, 132, 528, 698
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 3 cut(s) 36, 152, 287
Sau3AI GATC 2 cut(s) 112, 296
SchI GAGTC 2 cut(s) 455, 642
ScrFI CCNGG 2 cut(s) 163, 552
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 1 cut(s) 648
SsiI CCGC 1 cut(s) 116
SspI AATATT 1 cut(s) 594
SspMI CTAG 4 cut(s) 347, 510, 569, 644
StyD4I CCNGG 2 cut(s) 161, 550
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 331
TaqI TCGA 1 cut(s) 615
TasI AATT 1 cut(s) 648
TatI WGTACW 2 cut(s) 66, 697
TfiI GAWTC 3 cut(s) 20, 315, 384
Tru1I TTAA 3 cut(s) 36, 152, 287
Tru9I TTAA 3 cut(s) 36, 152, 287
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 2 cut(s) 95, 362
Tsp45I GTSAC 2 cut(s) 95, 362
TspDTI ATGAA 2 cut(s) 482, 489
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 4 cut(s) 347, 510, 569, 644
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.