Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010166

Physical Location & Seq

Genomic Coordinates Reverse (-)

2288167 .. 2302612

Gene Structure 14446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04290.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7758 bp

ATGGACCAACAACCTAACGCCTCCGGTCCTTCTTCCTCTTCTCCTTCTTCCCGTTCTGCCCCTGCGGAAGAGCCGGAGTACCTCGCGCGCTACTTAGTCGTGAAACACTCGTGGCGCGGCCGCTACAAGCGGATTCTCTGCCTCTCGAGCGCCGCGATCGTCACCTTGGACCCGTCCACGCTCGCCGTCACGAACTCGTACGACGTGTCGTCGGATTTCGACACCGCCGCGCCGATCATCGGCCGCGACGAGAGCTCCAGTGAGTTCAATTTGAGTGTGAGGACTGACGGCAGAGGGAAGTTTAAGTCGGTGAAGTTCTCGTCGAGGTATAGGGCGAGCATACTGACGGAGCTGCACAGGATAAGGGGCAGTCGGCTGGGGGTAGTTGCGGAATTTCCAGTGCTTCATCTCCGGCGCCGGAATGCCGAGTGGGTTGCTTATAAACTAAAAATTACTTATGTTGGGGTTGAACTTGTTGATTTAAAATGCGGAGACCTTCGCTGGTGCTTGGATTTTAGAGATTTTGATTCCCATGCCATTATTTCTCTTTCTGACGCTTATGGGAAGAAAGGCATTGAAGGAGGTTTTATTCTTTGTCCTTCATATGGAAGAAAATCAAAAGCTTTTCAAGCTGCTTCTGGAACGACAAATTCTGCCATCATTGCTAATTTGACTAAAACAGCAAAATCTATGGTCGGGTTGTCACTAACTGTGGAAACTTCTCAGTCTCTCACTGTAGCAGAGTATATAAAGCGAAGGGCAAAAGAAGCAGTTGGAGCAGCTGAAACTCCATGTGGTGGTTGGTCTGTGACAAGATTGCGCTCTGCTGCTCGTGGGACTCTAAATGTTCCAGGATTGAATTTGAGTGTTGGCCCAAAAGGTGGACTTGGGGAGCATGGTGATGCTGTATCTCGTCAACTGATTCTTACAAAAGTTTCACTGGTTGAAAGACGGCCAGAGAACTATGAAGCTGTTATCGTTCGACCCTTATCTGCAGTAAATGCCCTTGTTCGATTTACTGAGGAGCCGCAGATGTTTGCAATTGAGTTCAATGATGGATGCCCCATCCATGTATATGCAAGCACCTCTCGTGATAGCTTACTTGCGGCAGTTCGTGATTTGTTGCAAACAGAAAGGCAATGTGCTGTGACTGTGTTACCAAGACTGACGATGCCTGGCCATCGCATTGATCCACCTTGTGGGAGAGTTAATTTTGGAATTCAACGGCCTATTGCAGATATGGAGAGTGCATCCATGCATTTGAAGCACTTAGCAGCAGCTGCGAAAGATGCAGTTGCTGAAGGTGGTTCCATTCCGGGATCAAGAGCTAAGCTCTGGCGAAGAATAAGAGAGTTCAATGCATGTATACCGTATAATGGTGTCCCTCCTAACATAGAAGTGCCTGAGGTGACATTGATGGCTTTAATAACAATGCTTCCAGCTACGCCAAATCTTCCTCCAGAGTCCCCTCCTTTGCCACCCCCTTCCCCTAAAGCAGCTGCAACAGTCATGGGCTTTATTGCTTGTTTACGTAGATTATTAGCTTCAAGAACTGCTGCTTCACATGTCATGTCTTTTCCTGCTGCTGTTGGAAGAATAATGGGCTTACTCCGAAATGGTTCAGAGGGTGTCGCCGCTGAAGCTGCAGGCCTTATTGCAGTTCTTATTGGTGGTGGCCCTGGGGATACAAATATATTGACAGATTCTAAAGGTGAGCAGCATGCCACAATCATGCACACAAAGTCAGTGTTGTTTGCTCAACAAGGTTATGTCATTATACTTGCCAATAGACTGAAACCTATGTCTGTATCACCACTGTTATCAATGGCCGTTGTTGAGGTTCTTGAGGCAATGATATGTGATCCACATGGTGAGACAACACAGTACCCAGTGTTTGTTGAACTATTACGCCAAGTAGCTGGTTTGAAGCGTCGTCTGTTTGCGTTGTTTGGACATCCTGCTGAGAGTGTTCGGGAAACAGTGGCTGTGATTATGCGTACAATTGCTGAAGAAGATGCAATTGCAGCAGAGTCCATGCGTGATGCTGCATTGCGTGATGGTGCTTTGTTGAGACATTTATTGCATGCATTCTTCCTTCCAGCTGGGGAGCGACGTGAAGTTAGTCGACAGCTTGTTGCTCTTTGGGCAGATTCTTATCAACCCGCTCTAGATTTATTGTCTAGAGTTCTGCCACCTGGACTTGTTGCTTATTTGCACACAAAATCTGATGGAGTTCTATCAGAAGATTCTAATCAAGAAGTTTCCTTGACCAGTAGAAGACAGAGACGCTTATTTCAACAGAGGAGAGGTCGTACTGGAAGAGGAGCAACGTCCCAGGAACATTCCTTGCCTTCTGCAAACAATTATGATGTGAATGACCTCATGACACAGACAAGTAGTGATGTCTCAAAAGTGTCTGACAACTATCAAAGATCTGCAATGGATCCAAATTCTGGACAGGCTTCGACCATTCAATCTTCTGGTGCTAAGACTGGTGAAAACTTGACCAGTGAAGTATCTTCTACTGGGGCTCCACAAAGCAATTATACATCTTCTGTGGCTTCAGCTGATGCTCAGTCAACAGGTGGTCATGCTTCATTTGCAGCAAATACTGCAATCTCAACAGATTCTGACTCCAATGTTGCCGGTTCACAGAATTTGGGTCTCCCAGCCCCTGCTCAGGTTGTAGTGGAAAACACTCCTGTGGGATCTGGCAGGCTTCTGTGTAATTGGCCTGAATTCTGGCGAGCATTTAGCCTTGATCATAATCGTGCAGATTTGATCTGGAATGAGCGTACCAGGCAAGAGTTAAGGGAGGCCTTGCAGGCTGAGGTTCATAAGTTAGATGTTGAGAAGGAGCGCACAGAAGATATTGTACCTAGAGGTTCGACAGTAGATATGACTGGCCAAGATAGTGTGCCACAGATATCTTGGAACTACTCTGAGTTCTCTGTCAGATATCCTAGTTTGTCTAAAGAAGTTTGTGTGGGTCAGTATTATCTGCGCTTGCTGCTTGAGAGTGGCAGTGGTGGCAGGGCACAAGAATTTCCACTGCGTGATCCTGTTGCCTTCTTTAGGGCACTCTATCATCGTTTCCTATGCGATGCAGACATTGGGCTTACAGTGGACGGTGCTGTTCCAGATGAAATGGGTGCATCTGATGATTGGTGTGACATGGGAAGACTAGATGGTTTTGGTGGTGGAGGTGGATTTTCAGTCAGGGAGCTTTGTGCAAGAGCAATGACAATTGTATATGAACAGCATTACAAAACAGTAGGTCCCTTTGAAGGTACTGCTCACATTACAGTTCTGTTGGACAGGACAGATGATAGGGCTTTGAGGCACCGCCTTCTATTACTCTTGAAGGCGTTAATGAAGGTGTTATCAAACGTGGAGGCTTGTGTCTTGGTTGGAGGATGTGTGCTAGGTGTTGACATGCTGACAGCTGTTCATGAAGCTTCTGAAAGGACAGCTATTCCTTTGCAATCCAATTTGATTGCTGCTACTGCCTTCATGGAACCACTCAAGGAATGGATGTTTTTTGACAAGGAAGGAGCACAGGTCGGTCCTGTTGAAAAGGACGCCATAAGAAGATTTTGGTCCAAGAAGGCAATTGATTGGACAACAAAGTGCTGGGCTTCTGGGATGCTAGACTGGAAGAGACTACGTGATATTCGTGAACTTCGTTGGGCGCTAGCTGTTCGAGTTCCTGTTCTAACGCCAGCTCAGGTCGGGGAGGCGGCATTGTCCATATTGCACAGCATGGTATCTGCACATTCTGATTTAGACGATGCTGGAGAAATAGTTACCCCAACTCCTAGAGTAAAAAGGATATTGTCAAGTCCGCGTTGTCTTCCGCATATTGCTCAGGCCATGCTTTCTGGTGAACCAAGTATTGTAGAGAGTGCTGCTGCATTACTGAAGGCTGTTGTTACCAGAAATCCCATGGCCATGATTCGTCTATACAGTACAGGCGCATTTTATTTTTCCCTGGCATATCCGGGATCAAATCTCCTTTCAATTGCCCAACTTTTTTCAGTGACTCATGTTCACCAAGCATTTCATGGTGGTGAAGATGCTGCAGTTTCCTCTTCCTTACCTCTGGCAAAACGCAGTGTATTGGGTGGGCTTCTCCCTGAATCTTTGCTGTATGTATTAGAGCGTAGTGGTCCAGGTGCATTTGCAGCTGCAATGGTATCTGATTCCGATACCCCAGAGATTATATGGACTCACAAAATGCGAGCAGAAAATCTGATACGTCAGGTTTTGCAGCATCTTGGTGACTTTCCCCAGAAATTGTCACAGCACTGCCATTGTCTGTATGAGTATGCTCCTATGCCGCCAGTGACATACCCAGAGTTAAGAGATGAAATGTGGTGTCACCGTTATTACCTCCGGAACTTATGTGATGAGATTAGATTTCCAAATTGGCCAATTGTTGAACATGTTGAGTTTCTACAATCCTTACTGGTAATGTGGCGTGAGGAGCTTACAAGAAGACCGATGGACCTATCTGAGGAAGAAGCTTGTAAAATATTAGAGATTTCCTTGGAAGATGTGTCAAATGACGATGCCAATATCAAGAACTCTATTGAGATGGGTGAGGATACTTCTAGCATAAGCAAGCAGATTGAGAATATAGATGAAGAAAAGCTAAAGCGACAATATAGGAAACTTGCCATGAGATACCATCCAGACAAAAATCCTGAAGGAAGGGATAAGTTTCTTGCTGTGCAGAAAGCTTACGAGCGCTTGCAGGCCACTATGCAAGGCTTGCAAGGCCCTCAAGCTTGGCGGTTGTTGCTTTTATTGAAAGGGCAATGCATCTTGTACAGAAGATATGGAGATATATTGGAACCATTTAAATATGCTGGTTATCCAATGTTGCTCAATGCAGTTACTGTGGACAAGGATGATAACAATTTTCTCTCCTTGGAGAGAGCACCTCTCCTTGTTGCAGCATCAGAGCTTATTTGGCTGACGTGTGCATCTTCTTCATTGAATGGTGAAGAGCTTGTGAGGGATGGTGGCATACAACTTCTTGCAAATCTCCTTTCCCGTTGCATGTGTGTAGTTCAGCCAACTACTTCTGCAAATGAACCGTCCGCCATAATTGTTACTAATGTTATGCGCACCTTCTGTGTTTTGAGTCAATTTGAGAGTGCCTGGGCTGAGATACTTGAATACTCTGGATTAGTTGATGATATTGTGCACTGCACTGAGCTTGAGCTTGTACCTGCTGCTGTAGATGCTGCTCTCCAAACTATTGCCCATGTTTCTGTGTCTACTGAACTACAAGATGCCTTGCTTAAAGCTGGTGTCTTATGGTACCTTTTGCCAGTGCTGCTTCAGTATGACTCTACTGCAGATGAATCTGATACAACAGAATCACATGGTGTTGGTGCTAGTGTACAGATTGCAAAAAATATGCATGCTGTACGTGCATCGCAGGCGCTGTCAAGGCTTAGTGGTTTGTGTAGTAATGAGAGTTCAACACCATATAATCAGAATGCAGCTGATGCCCTTAGAGCTTTGTTGACTCCAAAACTTGCAAGTATGTTAAAAGATCAAGCTCCTAAGGACCTACTGTCGAAATTAAACAATAACTTGGAGTCCCCAGAGATTATCTGGAACTCTTCTACCCGAGCAGAACTACTGAAGTTTGTGGATGAGCAACGTGCAAGTCAGGGTCCAGACGGCTCATATGACCTGAAAGATTCGCATACCTTTGTGTACAAGGCATTGTCAAAAGAACTCTATGTTGGCAATGTTTACTTGAGGGTGTATAACGATCAGCCGGATTTTGAAATCAGTGAACAAGAGGCTTTCTGTGTTGCCTTAATTGATTTTATATCATATCTAGTACACAATCAATGTGCTCTAGACTCGGAAGTTCAGAATGAGCAAAAGCAGGATGGCTCATCCCTTGAAACATCTGAGCATCCTAGTGATATAGCTATTGGATCAGTGGATGAACATAGTCCCCCAGTTGAAGATTTGGCCGTATCCAACAGCAAAGTGGCAGAGACAGAAGAGTTTAAAGTGGTCAAGAACCTCAAGTTTGCATTGAATTCACTGAAGAACATACTGACAAGCAGTCCGAATTTGGCATCAATTTTTTCTACTAAAGACAAGCTATTGCCTCTTTTTGAATGCTTCTCTGTGCCTGTTGCATCAGAAAGCAACATACCTCAACTTTGCCTGAGTGTGTTATCACTCTTGACTACATATGCTCCCTGCTTGGAAGCTATGGTTGCAGATGGATCTAGTCTTCTCCTTTTATTGCAAATGCTTCACTCTGCCCCAAGTTGTCGTGAGGGGGTTCTTCATGTTCTATACGCTCTGGCAAGCACACCAGAGTTGGCTTGGGCAGCTGCCAAGCATGGGGGAGTGGTCTACATTCTTGAGCTTCTTTTGCCTTTGCAAGAAGAAATTTCCTTGCAGCAAAGAGCAGCTGCAGCCTCTTTGTTGGGAAAGCTTGTTGGGCAGCCAATGCATGGGCCGAGAGTTGCTATAACGCTAGCAAGGTTTCTTCCTGATGGCTTGGTATCAGTTATTAGGGATGGACCTGGTGAAGCTGTTGTAGTTGCCCTTGAACAGACTACTGAGACTCCAGAACTTGTATGGACACCAGCGATGGCCACTTCTCTATCCGCCCAAATTGCAACGATGGCAGCAGATCTATACCAAGAACAAATGAAAGGCCGTGTTGTTGACTGGGACGTACCTGAGCAGGCATCTGGGCAGCAAGAAATGAGAGATGAGCCCCAGGTTGGTGGAATCTACATTAGGTTATTCTTAAAAGATCCTAAGTTCCCTCTCAGAAATCCGAAGAGGTTCTTGGAAGGACTGCTAGACCAGTATTTGACATCCATTGCCGCCACACATTATGAATCACAAGCAGTCGACCCTGAACTTCCTTTGCTTCTGTCTGCTGCTTTGGTTTCATTACTGCGAGTACATCCTGCCCTTGCAGATCATGTTGGATATCTTGGTTATGTGCCCAAACTTGTGGCTGCTGTGGCTTATGAAGGAAGACGAGAAACAATGGCAACGGGGGAGGTGAACAATGGAAACTATGTAGATAGAGCAGAAGAGTCTGATGATGGATCCACACAGCCTACCCAAACTCCCCAAGAACGTGTGCGCCTCAGTTGTCTGCGTGTTCTACATCAACTGGCAGCTAGCACCATATGCGCTGAAGCTATGGCAGCAACTAGTGTAGGAACACCTCAGGTCGTTCCTCTTCTAATGAAAGCTATAGGATGGCAAGGTGGAAGCATACTAGCTCTGGAGACACTAAAGCGTGTTGTTGTTGCTGGAAACCGAGCTAGGGATGCACTAGTTGCACAAGGACTTAAGGTTGGCCTTGTTGAAGTACTTCTTGGCCTTCTTGATTGGAGAGCTGGGGGAAGGAATGGACTTTGCTCTCAGATGAAGTGGAATGAGTCTGAAGCATCTATTGGCAGAGTGCTAGCAATTGAGGTTTTGCATGCATTCGCGACGGAGGGAGCCCACTGTACTAAAGTACGGGACTTGTTGAATTCCTCAGATGTTTGGAGTGCTTACAAAGATCAGAAACATGATCTTTTCCTTCCTTCAAGTGCTCAATCTGCTGCTGCTGGAGTTGCTGGGCTAATCGAAAGTTCATCATCAAGACTCACTCATGCCATTACAGCTCCTCCACCACAACCTTCTACATCGAGACCTCCTGCTTCAACTATATATGAATCAAATGGAAAACAAGATCAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006897 GO:0006898 GO:0006955 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032879 GO:0032940 GO:0035577 GO:0036230 GO:0042119 GO:0042582 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043299 GO:0043312 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0060341 GO:0060627 GO:0065007 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099503 GO:1902954 GO:1903649 GO:2000641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 DnaJ

Protein Analysis

2586

Amino Acids

282.41

Weight (kDa)

5.76

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RME-8_N	PF19432	30 - 253	4e-22	DNAJ protein RME-8 N-terminal
RME-8_N	PF19432	299 - 749	7.5e-57	DNAJ protein RME-8 N-terminal
RME-8_N	PF19432	909 - 1007	3.2e-25	DNAJ protein RME-8 N-terminal
GYF_2	PF14237	1180 - 1228	1.7e-12	GYF domain 2
DnaJ	PF00226	1546 - 1586	4.1e-10	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26890
fragaria_vesca	FvH4_1g04290 FvH4_1g04290 FvH4_1g04983
malus_domestica	MD02G1042600.v1.1 MD15G1181200.v1.1
prunus_persica	Prupe.7G234400_v2.0.a1 Prupe.7G234400_v2.0.a1
pyrus_communis	pycom02g03540 pycom15g16350
rosa_chinensis	RchiOBHm_Chr2g0089861
rosa_laevigata	RLG00000016062
rosa_multiflora	Rmu_co8299847.1_g000001 Rmu_sc0002384.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151530
rosa_rugosa	Rorug02G0003700
rosa_samantha	Rh2AG049000 Rh2BG047900 Rh2CG050000 Rh2DG049100
rosa_wichuraiana	Rw2G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
Acc16I	TGCGCA	1 cut(s)	5132
Acc36I	ACCTGC	1 cut(s)	5245
Acc65I	GGTACC	1 cut(s)	5328
AccB1I	GGYRCC	3 cut(s)	414, 3342, 5328
AccB7I	CCANNNNNTGG	5 cut(s)	797, 881, 1199, 2453, 6497
AccBSI	CCGCTC	1 cut(s)	2165
AccI	GTMKAC	5 cut(s)	1366, 2125, 5285, 6396, 6906
AccII	CGCG	8 cut(s)	86, 88, 117, 155, 230, 246, 3847, 7502
AccIII	TCCGGA	1 cut(s)	4395
AcyI	GRCGYC	2 cut(s)	415, 3582
AdeI	CACNNNGTG	4 cut(s)	1199, 1871, 3056, 5396
AfeI	AGCGCT	1 cut(s)	4751
AflII	CTTAAG	1 cut(s)	7358
AflIII	ACRYGT	5 cut(s)	204, 1564, 4444, 4982, 7141
AhdI	GACNNNNNGTC	3 cut(s)	208, 5587, 6096
AhlI	ACTAGT	2 cut(s)	7217, 7342
AjiI	CACGTC	3 cut(s)	205, 2114, 4983
AjuI	GAANNNNNNNTTGG	8 cut(s)	5745, 5777, 6824, 6856, 7368, 7400, 7446, 7478
AleI	CACNNNNGTG	1 cut(s)	2702
Alw21I	GWGCWC	6 cut(s)	257, 3559, 4945, 5214, 5881, 7609
Alw44I	GTGCAC	1 cut(s)	5210
AlwNI	CAGNNNCTG	7 cut(s)	1280, 1298, 1985, 2630, 2675, 4901, 5455
Ama87I	CYCGRG	2 cut(s)	145, 5643
Aor13HI	TCCGGA	1 cut(s)	4395
Aor51HI	AGCGCT	1 cut(s)	4751
ApaLI	GTGCAC	1 cut(s)	5210
ArsI	GACNNNNNNTTYG	2 cut(s)	5087, 5119
Asp700I	GAANNNNTTC	3 cut(s)	1618, 6836, 7380
Asp718I	GGTACC	1 cut(s)	5328
AsuC2I	CCSGG	2 cut(s)	1317, 4002
AsuNHI	GCTAGC	4 cut(s)	3694, 6520, 7184, 7474
AvaI	CYCGRG	2 cut(s)	145, 5643
AxyI	CCTNAGG	3 cut(s)	1404, 5577, 7233
BaeGI	GKGCMC	4 cut(s)	3040, 3082, 5214, 7005
BalI	TGGCCA	5 cut(s)	1179, 2907, 3950, 4432, 6641
BamHI	GGATCC	2 cut(s)	2443, 7109
BanI	GGYRCC	3 cut(s)	414, 3342, 5328
BanII	GRGCYC	4 cut(s)	257, 2533, 6768, 7516
BarI	GAAGNNNNNNTAC	2 cut(s)	2859, 2891
BauI	CACGAG	3 cut(s)	109, 831, 1089
BbsI	GAAGAC	6 cut(s)	2284, 3187, 3845, 4504, 6263, 7042
Bbv12I	GWGCWC	6 cut(s)	257, 3559, 4945, 5214, 5881, 7609
BbvCI	CCTCAGC	1 cut(s)	2829
BceAI	ACGGC	8 cut(s)	170, 304, 968, 1241, 1814, 5713, 5987, 6690
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciVI	GTATCC	3 cut(s)	1678, 4600, 6016
BclI	TGATCA	1 cut(s)	2761
BcnI	CCSGG	2 cut(s)	1317, 4002
BcuI	ACTAGT	2 cut(s)	7217, 7342
BfmI	CTRYAG	8 cut(s)	735, 993, 1644, 4080, 5244, 5364, 6456, 7260
BfoI	RGCGCY	5 cut(s)	153, 418, 3695, 4753, 5456
BfrI	CTTAAG	1 cut(s)	7358
BfuAI	ACCTGC	1 cut(s)	5245
BfuI	GTATCC	3 cut(s)	1678, 4600, 6016
BglI	GCCNNNNNGGC	1 cut(s)	2825
BglII	AGATCT	2 cut(s)	2432, 6679
BlpI	GCTNAGC	1 cut(s)	1329
BmcAI	AGTACT	1 cut(s)	7380
BmeRI	GACNNNNNGTC	3 cut(s)	208, 5587, 6096
BmeT110I	CYCGRG	2 cut(s)	145, 5643
BmgBI	CACGTC	3 cut(s)	205, 2114, 4983
BmrI	ACTGGG	4 cut(s)	1883, 2535, 5981, 6727
BmtI	GCTAGC	4 cut(s)	3698, 6524, 7188, 7478
BmuI	ACTGGG	4 cut(s)	1883, 2535, 5981, 6727
BpiI	GAAGAC	6 cut(s)	2284, 3187, 3845, 4504, 6263, 7042
BplI	GAGNNNNNCTC	6 cut(s)	1317, 1349, 4930, 4962, 4932, 4964
BpmI	CTGGAG	6 cut(s)	241, 1443, 3816, 6597, 7313, 7644
Bpu10I	CCTNAGC	5 cut(s)	2679, 2829, 3726, 3867, 6729
Bpu1102I	GCTNAGC	1 cut(s)	1329
BpuEI	CTTGAG	8 cut(s)	1865, 3035, 3509, 4770, 5246, 5797, 6041, 6425
BpuMI	CCSGG	2 cut(s)	1317, 4002
BsaAI	YACGTR	3 cut(s)	1532, 3668, 5441
BsaBI	GATNNNNATC	3 cut(s)	2154, 2250, 2766
BsaHI	GRCGYC	2 cut(s)	415, 3582
BsaI	GGTCTC	3 cut(s)	486, 2669, 7699
BsaWI	WCCGGW	2 cut(s)	23, 4395
Bse118I	RCCGGY	1 cut(s)	2645
Bse21I	CCTNAGG	3 cut(s)	1404, 5577, 7233
Bse8I	GATNNNNATC	3 cut(s)	2154, 2250, 2766
BseAI	TCCGGA	1 cut(s)	4395
BseJI	GATNNNNATC	3 cut(s)	2154, 2250, 2766
BsePI	GCGCGC	1 cut(s)	86
BseRI	GAGGAG	5 cut(s)	1037, 2317, 2337, 4499, 7671
BseSI	GKGCMC	4 cut(s)	3040, 3082, 5214, 7005
BseX3I	CGGCCG	2 cut(s)	118, 241
BseYI	CCCAGC	6 cut(s)	376, 2102, 2668, 3633, 7406, 7631
BsgI	GTGCAG	5 cut(s)	338, 2793, 3756, 4754, 5200
Bsh1236I	CGCG	8 cut(s)	86, 88, 117, 155, 230, 246, 3847, 7502
Bsh1285I	CGRYCG	3 cut(s)	121, 159, 244
BshNI	GGYRCC	3 cut(s)	414, 3342, 5328
BsiEI	CGRYCG	3 cut(s)	121, 159, 244
BsiHKAI	GWGCWC	6 cut(s)	257, 3559, 4945, 5214, 5881, 7609
BsiHKCI	CYCGRG	2 cut(s)	145, 5643
BsiSI	CCGG	9 cut(s)	24, 74, 412, 418, 1316, 2646, 4001, 4396, 5798
BsiWI	CGTACG	1 cut(s)	198
BslFI	GGGAC	9 cut(s)	850, 1367, 1450, 2317, 3264, 5599, 5967, 6734, 7547
BsmBI	CGTCTC	1 cut(s)	2278
BsmFI	GGGAC	9 cut(s)	850, 1367, 1450, 2317, 3264, 5599, 5967, 6734, 7547
BsmI	GAATGC	5 cut(s)	427, 2087, 5515, 6158, 7496
Bso31I	GGTCTC	3 cut(s)	486, 2669, 7699
BsoBI	CYCGRG	2 cut(s)	145, 5643
Bsp13I	TCCGGA	1 cut(s)	4395
Bsp1407I	TGTACA	3 cut(s)	4830, 5410, 5733
Bsp1720I	GCTNAGC	1 cut(s)	1329
Bsp19I	CCATGG	1 cut(s)	3945
Bsp68I	TCGCGA	1 cut(s)	7502
BspEI	TCCGGA	1 cut(s)	4395
BspFNI	CGCG	8 cut(s)	86, 88, 117, 155, 230, 246, 3847, 7502
BspHI	TCATGA	2 cut(s)	2382, 3451
BspMAI	CTGCAG	5 cut(s)	997, 1648, 4084, 5368, 6460
BspMI	ACCTGC	1 cut(s)	5245
BspOI	GCTAGC	4 cut(s)	3698, 6524, 7188, 7478
BspQI	GCTCTTC	2 cut(s)	63, 5004
BspT107I	GGYRCC	3 cut(s)	414, 3342, 5328
BspTI	CTTAAG	1 cut(s)	7358
BspTNI	GGTCTC	3 cut(s)	486, 2669, 7699
BsrBI	CCGCTC	1 cut(s)	2165
BsrFI	RCCGGY	1 cut(s)	2645
BsrGI	TGTACA	3 cut(s)	4830, 5410, 5733
BssAI	RCCGGY	1 cut(s)	2645
BssHII	GCGCGC	1 cut(s)	86
BssNAI	GTATAC	1 cut(s)	1367
BssNI	GRCGYC	2 cut(s)	415, 3582
BssSI	CACGAG	3 cut(s)	109, 831, 1089
BssT1I	CCWWGG	4 cut(s)	165, 3945, 4548, 4932
Bst1107I	GTATAC	1 cut(s)	1367
Bst2BI	CACGAG	3 cut(s)	109, 831, 1089
BstACI	GRCGYC	2 cut(s)	415, 3582
BstAFI	CTTAAG	1 cut(s)	7358
BstAPI	GCANNNNNTGC	8 cut(s)	1001, 1280, 2612, 4774, 5519, 6493, 7194, 7346
BstAUI	TGTACA	3 cut(s)	4830, 5410, 5733
BstBAI	YACGTR	3 cut(s)	1532, 3668, 5441
BstDSI	CCRYGG	1 cut(s)	3945
BstENI	CCTNNNNNAGG	2 cut(s)	3073, 4514
BstFNI	CGCG	8 cut(s)	86, 88, 117, 155, 230, 246, 3847, 7502
BstH2I	RGCGCY	5 cut(s)	153, 418, 3695, 4753, 5456
BstMCI	CGRYCG	3 cut(s)	121, 159, 244
BstNSI	RCATGY	9 cut(s)	1365, 1568, 1724, 2087, 3439, 4448, 5068, 5435, 7496
BstSFI	CTRYAG	8 cut(s)	735, 993, 1644, 4080, 5244, 5364, 6456, 7260
BstSLI	GKGCMC	4 cut(s)	3040, 3082, 5214, 7005
BstSNI	TACGTA	1 cut(s)	1532
BstUI	CGCG	8 cut(s)	86, 88, 117, 155, 230, 246, 3847, 7502
BstV2I	GAAGAC	6 cut(s)	2284, 3187, 3845, 4504, 6263, 7042
BstX2I	RGATCY	7 cut(s)	2432, 2443, 2708, 6263, 6679, 6805, 7109
BstXI	CCANNNNNNTGG	3 cut(s)	1919, 6776, 7012
BstYI	RGATCY	7 cut(s)	2432, 2443, 2708, 6263, 6679, 6805, 7109
BstZ17I	GTATAC	1 cut(s)	1367
BstZI	CGGCCG	2 cut(s)	118, 241
Bsu36I	CCTNAGG	3 cut(s)	1404, 5577, 7233
BsuI	GTATCC	3 cut(s)	1678, 4600, 6016
BtgI	CCRYGG	1 cut(s)	3945
BtgZI	GCGATG	4 cut(s)	1166, 3117, 5430, 6650
BtrI	CACGTC	3 cut(s)	205, 2114, 4983
BtsI	GCAGTG	5 cut(s)	3031, 3050, 4120, 4306, 5212
BtuMI	TCGCGA	1 cut(s)	7502
BveI	ACCTGC	1 cut(s)	5245
CaiI	CAGNNNCTG	7 cut(s)	1280, 1298, 1985, 2630, 2675, 4901, 5455
CciI	TCATGA	2 cut(s)	2382, 3451
CciNI	GCGGCCGC	1 cut(s)	118
Cfr10I	RCCGGY	1 cut(s)	2645
CseI	GACGC	4 cut(s)	563, 1919, 2295, 3590
CsiI	ACCWGGT	1 cut(s)	6568
DinI	GGCGCC	1 cut(s)	416
DraI	TTTAAA	3 cut(s)	483, 4864, 6040
DraIII	CACNNNGTG	4 cut(s)	1199, 1871, 3056, 5396
DriI	GACNNNNNGTC	3 cut(s)	208, 5587, 6096
EagI	CGGCCG	2 cut(s)	118, 241
Eam1105I	GACNNNNNGTC	3 cut(s)	208, 5587, 6096
EciI	GGCGGA	2 cut(s)	5095, 6643
Ecl136II	GAGCTC	1 cut(s)	255
EclXI	CGGCCG	2 cut(s)	118, 241
Eco105I	TACGTA	1 cut(s)	1532
Eco130I	CCWWGG	4 cut(s)	165, 3945, 4548, 4932
Eco147I	AGGCCT	2 cut(s)	1650, 2819
Eco24I	GRGCYC	4 cut(s)	257, 2533, 6768, 7516
Eco31I	GGTCTC	3 cut(s)	486, 2669, 7699
Eco32I	GATATC	3 cut(s)	2928, 2960, 6989
Eco47III	AGCGCT	1 cut(s)	4751
Eco52I	CGGCCG	2 cut(s)	118, 241
Eco53kI	GAGCTC	1 cut(s)	255
Eco81I	CCTNAGG	3 cut(s)	1404, 5577, 7233
Eco88I	CYCGRG	2 cut(s)	145, 5643
EcoICRI	GAGCTC	1 cut(s)	255
EcoNI	CCTNNNNNAGG	2 cut(s)	3073, 4514
EcoO109I	RGGNCCY	3 cut(s)	3278, 4781, 5581
EcoRI	GAATTC	4 cut(s)	1218, 2738, 6070, 7543
EcoRV	GATATC	3 cut(s)	2928, 2960, 6989
EcoT14I	CCWWGG	4 cut(s)	165, 3945, 4548, 4932
EcoT22I	ATGCAT	7 cut(s)	1260, 1363, 2089, 4826, 5433, 6498, 7498
EcoT38I	GRGCYC	4 cut(s)	257, 2533, 6768, 7516
EgeI	GGCGCC	1 cut(s)	416
EheI	GGCGCC	1 cut(s)	416
ErhI	CCWWGG	4 cut(s)	165, 3945, 4548, 4932
Esp3I	CGTCTC	1 cut(s)	2278
FalI	AAGNNNNNCTT	6 cut(s)	870, 902, 6824, 6856, 7368, 7400
FaqI	GGGAC	9 cut(s)	850, 1367, 1450, 2317, 3264, 5599, 5967, 6734, 7547
FauI	CCCGC	1 cut(s)	2170
FauNDI	CATATG	4 cut(s)	604, 5704, 6229, 7193
FbaI	TGATCA	1 cut(s)	2761
FblI	GTMKAC	5 cut(s)	1366, 2125, 5285, 6396, 6906
FriOI	GRGCYC	4 cut(s)	257, 2533, 6768, 7516
FspAI	RTGCGCAY	1 cut(s)	5132
FspI	TGCGCA	1 cut(s)	5132
GsaI	CCCAGC	6 cut(s)	380, 2106, 2672, 3637, 7410, 7635
GsuI	CTGGAG	6 cut(s)	241, 1443, 3816, 6597, 7313, 7644
HaeII	RGCGCY	5 cut(s)	153, 418, 3695, 4753, 5456
HapII	CCGG	9 cut(s)	24, 74, 412, 418, 1316, 2646, 4001, 4396, 5798
HgaI	GACGC	4 cut(s)	563, 1919, 2295, 3590
Hin1I	GRCGYC	2 cut(s)	415, 3582
HincII	GTYRAC	7 cut(s)	917, 2126, 2580, 3433, 5538, 6715, 6907
HindII	GTYRAC	7 cut(s)	917, 2126, 2580, 3433, 5538, 6715, 6907
HindIII	AAGCTT	6 cut(s)	621, 3456, 4524, 4740, 4788, 6476
HpaII	CCGG	9 cut(s)	24, 74, 412, 418, 1316, 2646, 4001, 4396, 5798
Hpy99I	CGWCG	7 cut(s)	206, 214, 251, 325, 1935, 2115, 7507
Hsp92I	GRCGYC	2 cut(s)	415, 3582
KasI	GGCGCC	1 cut(s)	414
Kpn2I	TCCGGA	1 cut(s)	4395
KpnI	GGTACC	1 cut(s)	5332
Ksp22I	TGATCA	1 cut(s)	2761
LguI	GCTCTTC	2 cut(s)	63, 5004
MabI	ACCWGGT	1 cut(s)	6568
MbiI	CCGCTC	1 cut(s)	2165
MfeI	CAATTG	8 cut(s)	1041, 2001, 2019, 3246, 3612, 4020, 4434, 7479
MflI	RGATCY	7 cut(s)	2432, 2443, 2708, 6263, 6679, 6805, 7109
MlsI	TGGCCA	5 cut(s)	1179, 2907, 3950, 4432, 6641
MluNI	TGGCCA	5 cut(s)	1179, 2907, 3950, 4432, 6641
Mly113I	GGCGCC	1 cut(s)	415
MmeI	TCCRAC	7 cut(s)	192, 754, 1570, 3294, 3391, 6033, 6964
Mox20I	TGGCCA	5 cut(s)	1179, 2907, 3950, 4432, 6641
Mph1103I	ATGCAT	7 cut(s)	1260, 1363, 2089, 4826, 5433, 6498, 7498
MroI	TCCGGA	1 cut(s)	4395
MroXI	GAANNNNTTC	3 cut(s)	1618, 6836, 7380
MscI	TGGCCA	5 cut(s)	1179, 2907, 3950, 4432, 6641
Msp20I	TGGCCA	5 cut(s)	1179, 2907, 3950, 4432, 6641
MspCI	CTTAAG	1 cut(s)	7358
MspI	CCGG	9 cut(s)	24, 74, 412, 418, 1316, 2646, 4001, 4396, 5798
MunI	CAATTG	8 cut(s)	1041, 2001, 2019, 3246, 3612, 4020, 4434, 7479
Mva1269I	GAATGC	5 cut(s)	427, 2087, 5515, 6158, 7496
MvnI	CGCG	8 cut(s)	86, 88, 117, 155, 230, 246, 3847, 7502
NarI	GGCGCC	1 cut(s)	415
NciI	CCSGG	2 cut(s)	1317, 4002
NcoI	CCATGG	1 cut(s)	3945
NdeI	CATATG	4 cut(s)	604, 5704, 6229, 7193
NheI	GCTAGC	4 cut(s)	3694, 6520, 7184, 7474
NmeAIII	GCCGAG	2 cut(s)	451, 6528
NotI	GCGGCCGC	1 cut(s)	118
NruI	TCGCGA	1 cut(s)	7502
NsbI	TGCGCA	1 cut(s)	5132
NsiI	ATGCAT	7 cut(s)	1260, 1363, 2089, 4826, 5433, 6498, 7498
NspI	RCATGY	9 cut(s)	1365, 1568, 1724, 2087, 3439, 4448, 5068, 5435, 7496
OliI	CACNNNNGTG	1 cut(s)	2702
PaeI	GCATGC	4 cut(s)	1724, 2087, 5435, 7496
PaeR7I	CTCGAG	1 cut(s)	145
PagI	TCATGA	2 cut(s)	2382, 3451
PasI	CCCWGGG	1 cut(s)	1679
PauI	GCGCGC	1 cut(s)	86
PceI	AGGCCT	2 cut(s)	1650, 2819
PciI	ACATGT	2 cut(s)	1564, 4444
PciSI	GCTCTTC	2 cut(s)	63, 5004
PcsI	WCGNNNNNNNCGW	4 cut(s)	152, 246, 3673, 3682
PctI	GAATGC	5 cut(s)	427, 2087, 5515, 6158, 7496
PdmI	GAANNNNTTC	3 cut(s)	1618, 6836, 7380
Pfl23II	CGTACG	1 cut(s)	198
PflMI	CCANNNNNTGG	5 cut(s)	797, 881, 1199, 2453, 6497
PfoI	TCCNGGA	3 cut(s)	850, 1315, 4000
Ple19I	CGATCG	1 cut(s)	159
PluTI	GGCGCC	1 cut(s)	418
Ppu21I	YACGTR	3 cut(s)	1532, 3668, 5441
PpuMI	RGGWCCY	2 cut(s)	3278, 5581
PscI	ACATGT	2 cut(s)	1564, 4444
PsiI	TTATAA	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	257
Psp5II	RGGWCCY	2 cut(s)	3278, 5581
PspFI	CCCAGC	6 cut(s)	376, 2102, 2668, 3633, 7406, 7631
PspLI	CGTACG	1 cut(s)	198
PspPPI	RGGWCCY	2 cut(s)	3278, 5581
PsrI	GAACNNNNNNTAC	2 cut(s)	5473, 5505
PstI	CTGCAG	5 cut(s)	997, 1648, 4084, 5368, 6460
PstNI	CAGNNNCTG	7 cut(s)	1280, 1298, 1985, 2630, 2675, 4901, 5455
PsuI	RGATCY	7 cut(s)	2432, 2443, 2708, 6263, 6679, 6805, 7109
PteI	GCGCGC	1 cut(s)	86
PvuI	CGATCG	1 cut(s)	159
RruI	TCGCGA	1 cut(s)	7502
SacI	GAGCTC	1 cut(s)	257
SalI	GTCGAC	2 cut(s)	2124, 6905
SapI	GCTCTTC	2 cut(s)	63, 5004
ScaI	AGTACT	1 cut(s)	7380
SexAI	ACCWGGT	1 cut(s)	6568
SfcI	CTRYAG	8 cut(s)	735, 993, 1644, 4080, 5244, 5364, 6456, 7260
SfoI	GGCGCC	1 cut(s)	416
Sfr274I	CTCGAG	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	145
SmiI	ATTTAAAT	1 cut(s)	4864
SnaBI	TACGTA	1 cut(s)	1532
SpeI	ACTAGT	2 cut(s)	7217, 7342
SphI	GCATGC	4 cut(s)	1724, 2087, 5435, 7496
SseBI	AGGCCT	2 cut(s)	1650, 2819
SspDI	GGCGCC	1 cut(s)	414
SspI	AATATT	1 cut(s)	4536
SstI	GAGCTC	1 cut(s)	257
StuI	AGGCCT	2 cut(s)	1650, 2819
StyI	CCWWGG	4 cut(s)	165, 3945, 4548, 4932
SwaI	ATTTAAAT	1 cut(s)	4864
TaqII	GACCGA	2 cut(s)	3554, 4516
TatI	WGTACW	8 cut(s)	3968, 4830, 5410, 5733, 5863, 6958, 7378, 7520
TspGWI	ACGGA	2 cut(s)	362, 7520
Van91I	CCANNNNNTGG	5 cut(s)	797, 881, 1199, 2453, 6497
Vha464I	CTTAAG	1 cut(s)	7358
VneI	GTGCAC	1 cut(s)	5210
XagI	CCTNNNNNAGG	2 cut(s)	3073, 4514
XbaI	TCTAGA	3 cut(s)	2167, 2180, 5881
XceI	RCATGY	9 cut(s)	1365, 1568, 1724, 2087, 3439, 4448, 5068, 5435, 7496
XhoI	CTCGAG	1 cut(s)	145
XmiI	GTMKAC	5 cut(s)	1366, 2125, 5285, 6396, 6906
XmnI	GAANNNNTTC	3 cut(s)	1618, 6836, 7380
ZrmI	AGTACT	1 cut(s)	7380
Zsp2I	ATGCAT	7 cut(s)	1260, 1363, 2089, 4826, 5433, 6498, 7498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.