Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010166

Physical Location & Seq

Genomic Coordinates Reverse (-)

2655804 .. 2656564

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04983.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATCCAAATTCTGGACAGGCTTCGACCATTCAATTTTCTGGTGCTCAGACTGGTGAAAACTTGACTGGGGAAGTATCTTCTACTGGGGATCTACAAAGCAATTATACATCTTCTCTGGCTTCAGCTGATGCTCAGTCAACAGGTGGTCATGCTTCATTGGCAGGAAATACTGCAATCTCAACAGATTCTCAGCAAATATCCAATCTCACAGAATTCGGGTCTCCCTTCCCCTGCTCAGGAGCACAGGTTGGTCCTGTTGAAAAGGATGCCATAAGAAGATTTTGGTTCAAGAAGGCAATTGCTGGGATGCTAGACCGGAAGAGACCACATGATATTCGTGTTCGAGTTCCTGTTGTAACGCCAGCTCAGGTCAGTTATAACAAGCGTGGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006897 GO:0006898 GO:0006955 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032879 GO:0032940 GO:0035577 GO:0036230 GO:0042119 GO:0042582 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043299 GO:0043312 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0060341 GO:0060627 GO:0065007 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099503 GO:1902954 GO:1903649 GO:2000641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 DnaJ

Protein Analysis

133

Amino Acids

13.89

Weight (kDa)

7.92

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26890
fragaria_vesca	FvH4_1g04290 FvH4_1g04290 FvH4_1g04983
malus_domestica	MD02G1042600.v1.1 MD15G1181200.v1.1
prunus_persica	Prupe.7G234400_v2.0.a1 Prupe.7G234400_v2.0.a1
pyrus_communis	pycom02g03540 pycom15g16350
rosa_chinensis	RchiOBHm_Chr2g0089861
rosa_laevigata	RLG00000016062
rosa_multiflora	Rmu_co8299847.1_g000001 Rmu_sc0002384.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151530
rosa_rugosa	Rorug02G0003700
rosa_samantha	Rh2AG049000 Rh2BG047900 Rh2CG050000 Rh2DG049100
rosa_wichuraiana	Rw2G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccB7I	CCANNNNNTGG	1 cut(s)	14
AclWI	GGATC	2 cut(s)	12, 99
AcsI	RAATTY	2 cut(s)	10, 215
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	14, 239
AgsI	TTSAA	3 cut(s)	35, 263, 292
AluBI	AGCT	2 cut(s)	128, 368
AluI	AGCT	2 cut(s)	128, 368
Alw21I	GWGCWC	2 cut(s)	49, 247
Alw26I	GTCTC	2 cut(s)	228, 319
AlwI	GGATC	2 cut(s)	12, 99
ApoI	RAATTY	2 cut(s)	10, 215
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	2 cut(s)	49, 247
BcoDI	GTCTC	2 cut(s)	228, 319
BfaI	CTAG	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	2 cut(s)	78, 96
BmsI	GCATC	3 cut(s)	121, 259, 300
BmuI	ACTGGG	2 cut(s)	78, 96
Bpu10I	CCTNAGC	2 cut(s)	238, 369
BsaI	GGTCTC	2 cut(s)	228, 319
BsaWI	WCCGGW	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 239
Bse1I	ACTGG	3 cut(s)	58, 73, 91
BseGI	GGATG	2 cut(s)	274, 315
BseLI	CCNNNNNNNGG	2 cut(s)	14, 239
BseMII	CTCAG	5 cut(s)	62, 149, 206, 252, 383
BseNI	ACTGG	3 cut(s)	58, 73, 91
BseYI	CCCAGC	1 cut(s)	305
BsiHKAI	GWGCWC	2 cut(s)	49, 247
BsiSI	CCGG	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	14, 239
BsmAI	GTCTC	2 cut(s)	228, 319
Bso31I	GGTCTC	2 cut(s)	228, 319
Bsp1286I	GDGCHC	2 cut(s)	49, 247
Bsp143I	GATC	2 cut(s)	4, 91
BspCNI	CTCAG	5 cut(s)	61, 148, 205, 251, 382
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	12, 99
BspTNI	GGTCTC	2 cut(s)	228, 319
BsrI	ACTGG	3 cut(s)	58, 73, 91
BssMI	GATC	2 cut(s)	4, 91
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	5 cut(s)	48, 135, 192, 238, 369
BstF5I	GGATG	2 cut(s)	274, 315
BstKTI	GATC	2 cut(s)	7, 94
BstMAI	GTCTC	2 cut(s)	228, 319
BstMBI	GATC	2 cut(s)	4, 91
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	4, 91
BstYI	RGATCY	2 cut(s)	4, 91
BtsCI	GGATG	2 cut(s)	274, 315
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	254
CviAII	CATG	2 cut(s)	152, 332
CviJI	RGCY	4 cut(s)	23, 122, 128, 368
CviKI_1	RGCY	4 cut(s)	23, 122, 128, 368
DdeI	CTNAG	5 cut(s)	48, 135, 192, 238, 369
DpnI	GATC	2 cut(s)	6, 93
DpnII	GATC	2 cut(s)	4, 91
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco31I	GGTCTC	2 cut(s)	228, 319
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	215
FaeI	CATG	2 cut(s)	155, 335
FaiI	YATR	5 cut(s)	108, 153, 275, 333, 381
FatI	CATG	2 cut(s)	151, 331
FokI	GGATG	2 cut(s)	281, 322
FspBI	CTAG	1 cut(s)	314
GsaI	CCCAGC	1 cut(s)	309
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	2 cut(s)	155, 335
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	3 cut(s)	15, 240, 292
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	238, 289
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	5 cut(s)	48, 135, 192, 238, 369
Hsp92II	CATG	2 cut(s)	155, 335
Kzo9I	GATC	2 cut(s)	4, 91
LmnI	GCTCC	1 cut(s)	242
LweI	GCATC	3 cut(s)	121, 259, 300
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	6, 93
MboI	GATC	2 cut(s)	4, 91
MboII	GAAGA	4 cut(s)	72, 105, 291, 334
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	2 cut(s)	4, 91
MhlI	GDGCHC	2 cut(s)	49, 247
MluCI	AATT	5 cut(s)	10, 35, 103, 215, 300
MseI	TTAA	1 cut(s)	397
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	319
MunI	CAATTG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	2 cut(s)	4, 91
NlaIII	CATG	2 cut(s)	155, 335
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	14
PsiI	TTATAA	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	4, 91
PvuII	CAGCTG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	397
Sau3AI	GATC	2 cut(s)	4, 91
Sau96I	GGNCC	1 cut(s)	254
SduI	GDGCHC	2 cut(s)	49, 247
SetI	ASST	5 cut(s)	130, 148, 252, 370, 375
SfaNI	GCATC	3 cut(s)	121, 259, 300
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	5 cut(s)	10, 35, 103, 215, 300
SspMI	CTAG	1 cut(s)	314
TaqI	TCGA	2 cut(s)	26, 346
TasI	AATT	5 cut(s)	10, 35, 103, 215, 300
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	397
Tru9I	TTAA	1 cut(s)	397
TspDTI	ATGAA	1 cut(s)	147
Van91I	CCANNNNNTGG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	2 cut(s)	10, 215
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.