Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8299847.1

Orthogroup ID

OG0010166

Physical Location & Seq

Genomic Coordinates Reverse (-)

319 .. 681

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8299847.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgaaggtgttatcaaatgtggaggcttgcgtcttggttggaggatgtgtgctaggtgttgacatgctgacagctgttcatgaagcttctgaaaggacggctattcctttgcaatccaacttgattgctgctactgccttcatggaaccgctcaaggaatggatgttttttgacaaggaaggagcacaagttggacctgttgaaaaggatgcaataagaagattctggtccaagaaggcaattgattggacaacaaagtgctgggcttctgggatgctagactggaagaggttacgtgatattcgtgaacttcgttgggcgctagctgttcgggttcctgttctcacaccagctcaggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006897 GO:0006898 GO:0006955 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032879 GO:0032940 GO:0035577 GO:0036230 GO:0042119 GO:0042582 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043299 GO:0043312 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0060341 GO:0060627 GO:0065007 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099503 GO:1902954 GO:1903649 GO:2000641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 DnaJ

Protein Analysis

120

Amino Acids

13.51

Weight (kDa)

8.53

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26890
fragaria_vesca	FvH4_1g04290 FvH4_1g04290 FvH4_1g04983
malus_domestica	MD02G1042600.v1.1 MD15G1181200.v1.1
prunus_persica	Prupe.7G234400_v2.0.a1 Prupe.7G234400_v2.0.a1
pyrus_communis	pycom02g03540 pycom15g16350
rosa_chinensis	RchiOBHm_Chr2g0089861
rosa_laevigata	RLG00000016062
rosa_multiflora	Rmu_co8299847.1_g000001 Rmu_sc0002384.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151530
rosa_rugosa	Rorug02G0003700
rosa_samantha	Rh2AG049000 Rh2BG047900 Rh2CG050000 Rh2DG049100
rosa_wichuraiana	Rw2G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	151
AciI	CCGC	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	4 cut(s)	74, 86, 326, 353
AluI	AGCT	4 cut(s)	74, 86, 326, 353
Alw21I	GWGCWC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	194, 228
AsuNHI	GCTAGC	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	194, 228
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	114
BfaI	CTAG	4 cut(s)	53, 278, 323, 361
BfoI	RGCGCY	1 cut(s)	323
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	194, 228
BmgT120I	GGNCC	2 cut(s)	194, 228
BmiI	GGNNCC	2 cut(s)	147, 336
BmsI	GCATC	2 cut(s)	199, 264
BmtI	GCTAGC	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	296
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 174, 204
Bse1I	ACTGG	1 cut(s)	287
BseGI	GGATG	4 cut(s)	50, 168, 214, 279
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	147, 336
BspOI	GCTAGC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	28, 324
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	4 cut(s)	50, 168, 214, 279
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	115
BtsCI	GGATG	4 cut(s)	50, 168, 214, 279
Cac8I	GCNNGC	2 cut(s)	28, 324
CciI	TCATGA	1 cut(s)	79
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	194, 228
CseI	GACGC	1 cut(s)	19
CviAII	CATG	3 cut(s)	64, 80, 142
CviJI	RGCY	7 cut(s)	26, 74, 86, 101, 266, 326, 353
CviKI_1	RGCY	7 cut(s)	26, 74, 86, 101, 266, 326, 353
DdeI	CTNAG	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	194, 228
FaeI	CATG	3 cut(s)	67, 83, 145
FaiI	YATR	3 cut(s)	65, 81, 143
FatI	CATG	3 cut(s)	63, 79, 141
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	4 cut(s)	57, 175, 221, 286
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	4 cut(s)	53, 278, 323, 361
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	265
HaeII	RGCGCY	1 cut(s)	323
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	3 cut(s)	67, 83, 145
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	1 cut(s)	222
Hpy166II	GTNNAC	2 cut(s)	61, 308
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	80, 305
Hpy8I	GTNNAC	2 cut(s)	61, 308
HpyAV	CCTTC	3 cut(s)	148, 173, 229
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	112, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	3 cut(s)	67, 83, 145
HspAI	GCGC	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	210, 211, 247, 255, 268, 341, 351
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	2 cut(s)	199, 264
MaeI	CTAG	4 cut(s)	53, 278, 323, 361
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	291
MbiI	CCGCTC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	231, 298
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	1 cut(s)	240
MmeI	TCCRAC	3 cut(s)	19, 141, 172
MnlI	CCTC	3 cut(s)	16, 35, 282
MspA1I	CMGCKG	1 cut(s)	74
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	134
NheI	GCTAGC	1 cut(s)	322
NlaIII	CATG	3 cut(s)	67, 83, 145
NlaIV	GGNNCC	2 cut(s)	147, 336
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	2 cut(s)	301, 310
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	147, 336
PspPI	GGNCC	2 cut(s)	194, 228
PvuII	CAGCTG	1 cut(s)	74
SatI	GCNGC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	194, 228
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	2 cut(s)	199, 264
SinI	GGWCC	2 cut(s)	194, 228
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	4 cut(s)	53, 278, 323, 361
TaiI	ACGT	1 cut(s)	298
TasI	AATT	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	222
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	4 cut(s)	17, 68, 96, 130
VpaK11BI	GGWCC	2 cut(s)	194, 228
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	4 cut(s)	53, 278, 323, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.