Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010166

Physical Location & Seq

Genomic Coordinates Forward (+)

88754152 .. 88768864

Gene Structure 14713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7758 bp

ATGGACCAACCTAACACCTCCACTTCTTCTTCCTCTCCCTCTTCTTCCCGTTCTGCCCCTGTCGAAGAGCCGGAGTACCTCGCGCGCTACTTAGTCGTCAAGCACTCGTGGCGCGGCCGCTACAAGCGGATTCTCTGCCTCTCGAGCGCCTCCATCGTCACCTTGGACCCGTCCACCCTCGCCGTCACGAACTCGTACGTCGTCGCGTCGGATTTCGACACCGCCGCGCCGATCATCGGCCGGGATGAGAGCTCCAGTGAGTTCAATTTGAGTGTTCGGACTGACGGCAGGGGGAAGTTCAAGTCGGTGAAGTTCTCGTCCAGGTATAGGGCGAGCATACTGACCGAGCTGCATAGGATTAGGGGCAATCGGCTGGGGGTAGTAGCGGAATTTCCAGTGCTTCATCTCCGGCGACGGACTGGCGAGTGGGTTCCTTTTAAACTAAAAGTTACTTATGTTGGGGTTGAACTTATTGATTTAAAATGTGGAGACCTCCGCTGGTGCTTGGATTTTAGAGATTTCCATTCCCCTGCCATTATTTCCCTTTCCGATGCTTATGGGAAGAAAGGCATTGAAGGAGGTTTTATTCTTTGTCCTTCATATGGAAGAAAAACGAAAGCATTTCAAGCTGCTTCTGGAACAACAAATTCTGCTATCATTGCTAATTTGACTAAAACAGCAAAATCTATGGTCGGGGTGTCACTAAATGTGGAAACTTCTCAGTCTCTCACTATAGCAGAGTATATAAAGCGAAGAGCAAAAGAAGCAGTTGGAGCAGATGAAACTCCATGTGGAGGTTGGTCTGTGACAAGATTGCGCTCTGCTGCTCGTGGAACTCTAAATGTTCCAGGATTGAATTTGAGCGTTGGCCCAAAAGGTGGACTTGGGGAGCATGGTGATGCTGTATCTCGTCAATTGATTCTTACAAAAGTTTCACTTGTTGAAAGACGCCCAGAGAACTATGAAGCTGTCATCGTTCGACCTTTATCTGCAGTAAATGCCCTTGTTCGATTTACTGAGGAGCCTCAGATGTTTGCAATTGAGTTCAATGATGGATGCCCCATCCATGTATATGCAAGCACCTCTCGTGATAGCTTACTTGCGGCAGTTCGTGATCTGTTGCAAACAGAAGGTCAATGTGCTATGGCTGTGTTACCAAGACTGACGATGCCTGGCCATCGCGTTGATCCACCTTGCGGTAGAGTTAATTTACAATTTGGACTACAACGGCCTATTGCAGATATGGAGAGTGCATCCATGCATTTGAAGCACTTAGCAGCAGCTGCCAAAGATGCAGTTTCTGAAGGTGGTTCCATTCCGGGATCAAGAGCTAAGCTCTGGCGCAGAATAAGAGAGTTCAACGCATGCATACCATATACTGGAGTCCCTCCTAACATAGAAGTACCTGAGGTGACTTTGATGGCTTTAATAACAATGCTTCCAGCTACGCCAAATCTTCCTCCAGAGTCCCCTCCCTTGCCACCCCCTTCACCTAAAGCGGCTGCAACAGTCATGGGCTTTATTGCATGTTTACGTAGATTGTTGGCTTCAAGAACTGCAGCTTCACATGTCATGTCTTTTCCTGCTGCTGTTGGAAGAATAATGGGCTTACTCAGAAATGGTTCAGAGGGTGTAGCCGCTGAAGCTGCAGGCCTTATTGCAGTTCTTATTGGTGGTGGTCCTGGGGATACAAATATATTGACAGATTCTAAAGGTGAGCATTATGCCACAATCATGCACACAAAGTCAGTGTTGTTTGCGCAACAAGGTTATGTCATTATACTTGCCAATAGACTGAAGCCTATGTCTGTATCACCACTATTATCAATGGCCGTTGTTGAGGTTCTTGAGGCAATGATATGTGATCCACATGGTGAGACAACACAGTACCCAGTGTTTGTTGAACTATTACGCCAAGTAGCTGGTTTGAAACGTCGTTTGTTTGCATTGTTTGGACATCCTGCTGAAAGTGTTCGGGAAACAGTGGCTGTGATTATGCGTACAATTGCTGAAGAAGATGCAATTGCAGCAGAGTCCATGCGCGATGCTGCATTGCGTGATGGTGCTTTGTTGAGGCATTTATTGCATGCGTTCTTCCTTCCGGCTGGTGAGCGACGTGAGGTTAGTCGACAGCTTGTTGCTCTTTGGGCAGATTCGTATCAACCCGCTCTGGATTTATTGTCTAGAGTTCTACCTCCTGGACTTGTTGCTTATTTGCACACAAAATCTGATGGAGTTCTATCAGAAGAGTCTAATCAAGAAGTTTCCTTGACCAGTAGAAGACAGAGACGCTTACTTCAACAGAGGAGAGGCCGTACCGGAAGAGGAGCAACATCCCAGGAGCATTCCTTGCCATCTGTAAACAATTTTGATGTGAATGACCCCATGACACAGACAAGTGGTGATGTCTCGAAAGTGTCAAATAACTATCAAAGATCTGCAATGGATCCAAATTCTGGACAGGCTCCGACCATTCAATCTTCTGGTGCTCAAACTGGTGAAAACTTGACTGGTGAAGTATCCTCTACTGGGGCCCCGCAAAGCAATAATACATCTATTGTGGCTTCAGCTGATGCTCCATCAACAGGTGTTCATGCTTCATTGGCAGCAAATACTGCAATCTCAACAGATTCTGACTCCAATGTTGCTGGTTTCCATAATGCGGGTCTCCCTGCCCCTGCTCAGGTTGTTGTGGAAAACACTCCTGTGGGATCCGGTAGGCTTCTATGTAATTGGCCTGAATTCTGGCGAGCATTTAGCCTTGATCATAATCGTGCAGATTTGATCTGGAATGAGCGTACCAGGCAAGAGTTAAGGGAGGCCTTGCAGGCTGAGGTTCATAAGTTAGATGTTGAGAAGGAGCGTACAGAAGATATTGTTCCAAGAGGTTCTACAGTAGAGATGACTGGGCAAGATAGTGTGCCGCAGATATCTTGGAACTACTCTGAGTTCTCTGTCGGATATCCTAGTTTGTCTAAAGAAGTTTGTGTGGGTCAGTATTATCTGCGCTTGCTGCTTGAGAGTGGCAGTGGTGGCAGGGCACAAGAATTTCCACTGCGCGATCCTGTTGCCTTCTTTAGAGCACTCTATCATCGTTTCTTATGTGATGCAGACATAGGGCTTACCGTAGATGGTGCTGTTCCGGATGAAATGGGTGCATCTGATGATTGGTGCGACATGGGAAGACTAGATGGTTTTGGAGGTGGAGGGGGATTTTCAGTTAGGGAGCTTTGTGCAAGAGCAATGACAATTGTATATGAACAGCATTACAAAACAGTAGGTCCCTTTGAGGGTACTGCTCACATTACAGTTCTGTTGGACAGGACAGATGATAGGGCTTTGAGGCACCGCCTTCTGTTGCTTTTGAAGGCTTTAATGAAGGTGTTATCAAATGTGGAGGCTTGCGTCTTGGTTGGAGGATGTGTGCTAGGTGTTGACATGCTGACAGCTGTTCATGAAGCTTCTGAAAGGACGGCTATTCCTTTGCAATCCAACTTGATTGCTGCTACTGCCTTCATGGAACCGCTCAAGGAATGGATGTTTTTTGACAAGGAAGGAGCACAAGTTGGACCTGTTGAAAAGGATGCAATAAGAAGATTCTGGTCCAAGAAGGCAATTGATTGGACAACAAAGTGCTGGGCTTCTGGGATGCTAGACTGGAAGAGGTTACGCGATATTCGTGAACTTCGTTGGGCACTAGCTGTTCGGGTTCCTGTTCTCACGCCAGCTCAGGTTGGGGAGGCGGCATTGTCCATATTGCATAGCATGGTATCTGCACATTCTGATTTAGATGATGCTGGAGAAATAGTTACCCCAACTCCTAGAGTAAAAAGGATATTGTCAAGTCCACGTTGTCTTCCGCATATTGCTCAGGCCATGCTTTCTGGAGAACCAAGTATTGTAGAGAGTGCTGCTGCATTACTGAAGGCTGTTGTTACCAGAAATCCGAAGGCCATGATTCGTCTATACAGCACAGGCGCTTTTTATTTTTCCCTGGCATATCCGGGATCAAATCTCCTTTCAATTGCCCAACTCTTTTCAGTGACTCATGTTCACCAAGCATTTCATGGTGGCGAAGATGCTGCAGTCTCCTCTTCCCTACCTCTGGCAAAACGCAGTGTATTGGGTGGGCTTCTTCCTGAATCTTTGCTGTATGTATTAGAGCGTAGTGGTCCAGGTGCATTTGCAGCTGCAATGGTATCTGATTCTGATACTCCAGAGATTATATGGACTCACAAGATGCGAGCAGATAATCTGATACGTCAGGTTTTGCAGCATCTTGGTGACTTTCCCCAGAAATTGTCACAGCACTGCCATTGTCTATATGAGTATGCTCCTATGCCGCCAGTGACATACCCAGAGCTAAGAGATGAAATGTGGTGTCACCGTTATTACCTCCGCAACTTATGTGATGAGATTAGATTTCCAAATTGGCCAATTGTTGAACATGTTGAGTTTCTACAGTCATTACTGGTAATGTGGCGTGAGGAACTTACAAGAAGACCGATGGATCTTTCTGAGGAAGAAGCTTGCAAAATATTAGAGATTTCCTTGGAAGATGTGTCAAGTGATGATGCCAATATGAAACATTCTGTTGAGATGGGTGAGGATACGTCTAGCATATCCAAGCAGATTGAGAATATTGATGAAGAAAAGCTCAAGCGACAATATAGGAAACTTGCCATGAGATACCATCCAGACAAAAATCCTGAAGGAAGGGATAAGTTTCTTGCTGTACAGAAAGCTTATGAGCGCCTGCAGGCCACTATGCAAGGCTTGCAAGGCCCTCAGGCTTGGCGGTTGTTGCTTTTATTGAAAGGGCAATGCATCTTGTACAGAAGATATGGAGATATATTGGAACCGTTTAAATATGCTGGTTATCCGATGTTGCTTAGTGCAGTTACTGTGGACAAGGATGATAACAATTTTCTTTCCTTAGAAAGAGCACCTCTCCTTGTTGCAGCATCAGAGCTTATTTGGCTTACGTGTGCATCTTCTTCATTGAATGGTGAAGAGCTTGTGAGGGATGGAGGCATACAACTTCTTGGAAATCTTCTTTCCCGTTGCATGTGTGTAGTTCAGCCAACTACTCCTGCAAGTGAACCATCTGCCATAATTGTTACAAATGTTATGCGCACCTTCTGTGTTTTGAGTCAATTTGAGAGTGCCTGGGCAGAGATACTTGAATATTCTGGACTAGTTGATGATATTGTGCACTGCACTGAGCTGGAGCTTGTACCTGCTGCTGTAGATGCTGCCCTCCAGACTATTGCCCATGTTTCTGTGTCTACTCAATTGCAAGATGCCTTGCTTAAGGCTGGTGTCTTATGGTACCTTTTGCCCGTGCTGCTTCAGTATGACTCTACTGCAGAGGAATCTGATACAACAGAATCACATGGTGTTGGTGCTAGCGTACAGATTGCCAAAAATATGCATGCTATACGTGCATCACAGGCGCTATCAAGGCTTAGTGGTTTGTGTAGTAATCAGAGTTCAACACCTTATAATCAGACTGCAGCTGATGCCCTCAGAGCGTTGTTGACTCCCAAACTTGCCAGTATGTTAAAAGATCAAGCTCCTAAAGACCTACTGTCAAAATTAAACAATAACTTGGAGTCTCCAGAGATTATCTGGAACTCTTCCACCCGAGCAGAACTACTGAAGTTTGTGGATCAGCAACGTGCAAGTCAGGGTCCAGACGGCTCATATGACCTGAAAGATTCGCATATGTTTGTGTACAAGGCACTGTCAAAAGAACTTTATGTTGGCAATGTTTACTTGAGGGTGTATAACGATCAGCCCGATTTTGATATTAGTGAACCAGAGGCTTTCTGTGTCGCTTTAATTGATTTTATATCATATCTAGTACACAATCAATGTCCTCAAGATTCAGAAGTTCACGATGAGCCAAAGCAGGATGGCTCATCCCTTGAAACATCTGAGCATCCTAATGATATGGCTATTAGATCAGTGGATGAACTAAGTGCTCCAGTTGAAGATTTGACAGTATCCAACGGCAAAGTGGCAGACAAAGAAGAATCTAAAGTGGTCAAAAACCTTAAGTTTGCATTGAATTCACTCAAGAACATACTGACAAGCAGTCCAAATTTGGCGTCAATTTTTTCTACTAAAGACAAGCTTTTGCCTCTTTTTGAATGCTTCTCTGTGCCTGTTGCACCAGAAAGCAACATACCTCAACTTTGCCTGAGTGTGTTGTCACTCTTGACAACATATGCTCCCTGCTTGGAGGCTATGGTTGCAGATGGATCTAGCCTTCTCCTTTTATTGCAAATGCTTCACTCAGCCCCAAGTTGTCGTGAGGGGGTTCTTCATGTTCTATATGCTCTGGCAAGCACACCAGAGCTTGCTTGGGCAGCTGCCAAGCATGGAGGAGTGGTCTACATTCTTGAGCTTCTCTTGCCTTTGCAGGAAGAAATTTCCTTGCAGCAAAGAGCAGCTGCAGCCTCTTTGTTGGGGAAGCTTGTTGGGCAGCCAATGCATGGGCCAAGAGTTGCTATAACGCTAGCAAGGTTTCTTCCTGATGGCTTGGTATCAGTTATTAGGGATGGACCCGGGGAAGCTGTTGTAGTTGCCCTTGAACAGACTACTGAGACTCCAGAACTTGTATGGACACCAGCGATGGCTACTTCTCTGTCTGCACAAATCGCGACGATGGCAGCAGATCTATACCAAGAACAAATGAAAGGGCGTGTTGTTGACTGGGACATACCTGAGCAGGCATCTGGGCAGCAAGAAATGAGAGATGAGCCGCAGGTTGGTGGAATATATATTAGGTTATTCTTAAAAGATCCTAAATTCCCTCTCAGAAATCCAAAGAGGTTCTTGGAAGGACTGCTAGATCAGTATTTGACATCCATTGCCGCCACACATTATGAAACACAAGCTGTCGACCCTGAACTTCCTTTGCTCCTGTCTGCTGCTTTGGTTTCATTATTGCGAGTACATCCTGCCCTTGCTGATCATGTTGGATACCTTGGATATGTGCCCAAACTAGTGGCTGCTGTGGCTTATGAAGGAAGACGAGAAACAATGGCATCGGGGGAGGTGAACAATGGAAACTATGTGGACAGAGCAGAGGAGTCTGATGATACACAGCCTGCCCAAACTCCCCAAGAACGTGTGCGCCTCAGTTGTCTGCGTGTTCTACATCAATTGGCAGCTAGCACCACATGTGCTGAAGCTATGGCAGCAACTAGTGTAGGAACACCTCAGGTCGTTCCTCTTCTAATGAAAGCTATAGGATGGCAAGGGGGAAGCATACTAGCTCTGGAGACCTTAAAGCGTGTTGTTGTTGCTGGAAACCGAGCTAGGGATGCACTCGTTGCACAAGGACTTAAGGTTGGCCTTGTTGAAGTACTTCTTGGCCTTCTTGATTGGAGAGCTGGAGGAAGGAATGGACTTTGCTCTCAGATGAAGTGGAATGAATCTGAAGCATCTATTGGCAGAGTGCTAGCAATTGAGGTTTTGCATGCATTCGCAACGGAGGGGGCCCACTGTACTAAAGTGCGGGACCTACTGAATTCCTCAGATGTTTGGAGTGCTTATAAAGATCAGAAACATGATCTTTTCCTTCCTTCAAGTGCGCAATCTGCTGCCGCTGGAATTGCTGGGCTAATAGAAAATTCATCATCAAGACTCACTTATGCCATTACAGCTCCTCCACCACAACCCTCTACATCGAGACCTCCTGCGTCAACTACATTTGAATCAAATGGAAGATATGATCAGCTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006897 GO:0006898 GO:0006955 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032879 GO:0032940 GO:0035577 GO:0036230 GO:0042119 GO:0042582 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043299 GO:0043312 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0060341 GO:0060627 GO:0065007 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099503 GO:1902954 GO:1903649 GO:2000641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 DnaJ

Protein Analysis

2585

Amino Acids

282.43

Weight (kDa)

5.84

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RME-8_N	PF19432	29 - 252	2.4e-22	DNAJ protein RME-8 N-terminal
RME-8_N	PF19432	298 - 752	6.4e-56	DNAJ protein RME-8 N-terminal
RME-8_N	PF19432	910 - 1008	1.4e-24	DNAJ protein RME-8 N-terminal
GYF_2	PF14237	1181 - 1229	1.8e-12	GYF domain 2
DnaJ	PF00226	1547 - 1587	4.1e-10	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26890
fragaria_vesca	FvH4_1g04290 FvH4_1g04290 FvH4_1g04983
malus_domestica	MD02G1042600.v1.1 MD15G1181200.v1.1
prunus_persica	Prupe.7G234400_v2.0.a1 Prupe.7G234400_v2.0.a1
pyrus_communis	pycom02g03540 pycom15g16350
rosa_chinensis	RchiOBHm_Chr2g0089861
rosa_laevigata	RLG00000016062
rosa_multiflora	Rmu_co8299847.1_g000001 Rmu_sc0002384.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151530
rosa_rugosa	Rorug02G0003700
rosa_samantha	Rh2AG049000 Rh2BG047900 Rh2CG050000 Rh2DG049100
rosa_wichuraiana	Rw2G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	5505, 7566
Acc16I	TGCGCA	3 cut(s)	1761, 5135, 7605
Acc36I	ACCTGC	2 cut(s)	5248, 6763
Acc65I	GGTACC	1 cut(s)	5331
AccB1I	GGYRCC	2 cut(s)	3345, 5331
AccB7I	CCANNNNNTGG	4 cut(s)	878, 1379, 2456, 6500
AccBSI	CCGCTC	2 cut(s)	2168, 3526
AccI	GTMKAC	4 cut(s)	2128, 5288, 6399, 6909
AccIII	TCCGGA	1 cut(s)	3142
AcoI	YGGCCR	5 cut(s)	115, 238, 1174, 1830, 4433
AcyI	GRCGYC	2 cut(s)	949, 6113
AdeI	CACNNNGTG	2 cut(s)	1874, 5399
AflII	CTTAAG	3 cut(s)	5312, 6059, 7355
AflIII	ACRYGT	5 cut(s)	1567, 4447, 4985, 7138, 7190
AhdI	GACNNNNNGTC	2 cut(s)	5590, 6099
AhlI	ACTAGT	3 cut(s)	5197, 7012, 7214
AjiI	CACGTC	1 cut(s)	2117
AjuI	GAANNNNNNNTTGG	6 cut(s)	5748, 5780, 7365, 7397, 7443, 7475
AleI	CACNNNNGTG	1 cut(s)	2705
Alw21I	GWGCWC	7 cut(s)	254, 2491, 3085, 3562, 4948, 5217, 5989
Alw44I	GTGCAC	1 cut(s)	5213
AlwNI	CAGNNNCTG	5 cut(s)	1283, 1301, 1988, 2633, 4904
Ama87I	CYCGRG	3 cut(s)	142, 5646, 6572
Aor13HI	TCCGGA	1 cut(s)	3142
ApaI	GGGCCC	2 cut(s)	2536, 7513
ApaLI	GTGCAC	1 cut(s)	5213
ArsI	GACNNNNNNTTYG	4 cut(s)	1117, 1149, 6098, 6130
Asp700I	GAANNNNTTC	3 cut(s)	1621, 1971, 7377
Asp718I	GGTACC	1 cut(s)	5331
AsuC2I	CCSGG	5 cut(s)	242, 1320, 4005, 6573, 6574
AsuNHI	GCTAGC	4 cut(s)	5408, 6523, 7181, 7471
AvaI	CYCGRG	3 cut(s)	142, 5646, 6572
AxyI	CCTNAGG	3 cut(s)	1407, 4788, 7230
BaeGI	GKGCMC	6 cut(s)	2536, 3043, 3697, 5217, 7008, 7513
BalI	TGGCCA	2 cut(s)	1176, 4435
BamHI	GGATCC	2 cut(s)	2446, 2711
BanI	GGYRCC	2 cut(s)	3345, 5331
BanII	GRGCYC	3 cut(s)	254, 2536, 7513
BauI	CACGAG	3 cut(s)	106, 828, 1086
BbsI	GAAGAC	5 cut(s)	2287, 3190, 3848, 4507, 7045
Bbv12I	GWGCWC	7 cut(s)	254, 2491, 3085, 3562, 4948, 5217, 5989
BbvCI	CCTCAGC	1 cut(s)	2832
BceAI	ACGGC	8 cut(s)	167, 301, 1244, 1817, 2298, 3489, 5716, 6031
BcgI	CGANNNNNNTGC	4 cut(s)	3050, 3084, 4064, 4098
BciVI	GTATCC	5 cut(s)	1681, 2530, 4603, 6019, 6983
BclI	TGATCA	3 cut(s)	2764, 6979, 7744
BcnI	CCSGG	5 cut(s)	242, 1320, 4005, 6573, 6574
BcuI	ACTAGT	3 cut(s)	5197, 7012, 7214
BfoI	RGCGCY	4 cut(s)	150, 3981, 4756, 5459
BfrI	CTTAAG	3 cut(s)	5312, 6059, 7355
BfuAI	ACCTGC	2 cut(s)	5248, 6763
BfuI	GTATCC	5 cut(s)	1681, 2530, 4603, 6019, 6983
BglI	GCCNNNNNGGC	1 cut(s)	2828
BglII	AGATCT	2 cut(s)	2435, 6682
BlpI	GCTNAGC	1 cut(s)	1332
BmcAI	AGTACT	1 cut(s)	7377
BmeRI	GACNNNNNGTC	2 cut(s)	5590, 6099
BmeT110I	CYCGRG	3 cut(s)	142, 5646, 6572
BmgBI	CACGTC	1 cut(s)	2117
BmrI	ACTGGG	4 cut(s)	1886, 2538, 2916, 6730
BmtI	GCTAGC	4 cut(s)	5412, 6527, 7185, 7475
BmuI	ACTGGG	4 cut(s)	1886, 2538, 2916, 6730
BpiI	GAAGAC	5 cut(s)	2287, 3190, 3848, 4507, 7045
BplI	GAGNNNNNCTC	4 cut(s)	1320, 1352, 4935, 4967
Bpu10I	CCTNAGC	5 cut(s)	2682, 2832, 3729, 3870, 6732
Bpu1102I	GCTNAGC	1 cut(s)	1332
BpuEI	CTTGAG	8 cut(s)	1868, 3038, 3512, 4643, 5800, 5868, 6065, 6428
BpuMI	CCSGG	5 cut(s)	242, 1320, 4005, 6573, 6574
BsaAI	YACGTR	3 cut(s)	1535, 4986, 5444
BsaBI	GATNNNNATC	2 cut(s)	2157, 2769
BsaHI	GRCGYC	2 cut(s)	949, 6113
BsaI	GGTCTC	4 cut(s)	483, 2672, 7286, 7696
BsaJI	CCNNGG	9 cut(s)	162, 1682, 2337, 3993, 4551, 5169, 6572, 6573, 6994
BsaWI	WCCGGW	3 cut(s)	2318, 2714, 3142
Bse21I	CCTNAGG	3 cut(s)	1407, 4788, 7230
Bse3DI	GCAATG	9 cut(s)	657, 1860, 2051, 2448, 3249, 4200, 4829, 5776, 6876
Bse8I	GATNNNNATC	2 cut(s)	2157, 2769
BseAI	TCCGGA	1 cut(s)	3142
BseDI	CCNNGG	9 cut(s)	162, 1682, 2337, 3993, 4551, 5169, 6572, 6573, 6994
BseJI	GATNNNNATC	2 cut(s)	2157, 2769
BseMI	GCAATG	9 cut(s)	657, 1860, 2051, 2448, 3249, 4200, 4829, 5776, 6876
BsePI	GCGCGC	1 cut(s)	83
BseRI	GAGGAG	7 cut(s)	1034, 2320, 2340, 4081, 6405, 7112, 7668
BseSI	GKGCMC	6 cut(s)	2536, 3043, 3697, 5217, 7008, 7513
BseX3I	CGGCCG	2 cut(s)	115, 238
BseYI	CCCAGC	3 cut(s)	373, 3636, 7628
BsgI	GTGCAG	5 cut(s)	2796, 3759, 4917, 5203, 6642
Bsh1285I	CGRYCG	2 cut(s)	118, 241
BshNI	GGYRCC	2 cut(s)	3345, 5331
BsiEI	CGRYCG	2 cut(s)	118, 241
BsiHKAI	GWGCWC	7 cut(s)	254, 2491, 3085, 3562, 4948, 5217, 5989
BsiHKCI	CYCGRG	3 cut(s)	142, 5646, 6572
BsiWI	CGTACG	1 cut(s)	195
BslFI	GGGAC	5 cut(s)	1370, 1453, 3267, 6737, 7544
BsmBI	CGTCTC	1 cut(s)	2281
BsmFI	GGGAC	5 cut(s)	1370, 1453, 3267, 6737, 7544
BsmI	GAATGC	3 cut(s)	2344, 6161, 7493
Bso31I	GGTCTC	4 cut(s)	483, 2672, 7286, 7696
BsoBI	CYCGRG	3 cut(s)	142, 5646, 6572
Bsp120I	GGGCCC	2 cut(s)	2532, 7509
Bsp13I	TCCGGA	1 cut(s)	3142
Bsp1407I	TGTACA	3 cut(s)	4735, 4833, 5736
Bsp1720I	GCTNAGC	1 cut(s)	1332
Bsp68I	TCGCGA	1 cut(s)	6668
BspEI	TCCGGA	1 cut(s)	3142
BspHI	TCATGA	1 cut(s)	3454
BspMAI	CTGCAG	8 cut(s)	994, 1561, 1651, 4087, 4761, 5371, 5518, 6463
BspMI	ACCTGC	2 cut(s)	5248, 6763
BspOI	GCTAGC	4 cut(s)	5412, 6527, 7185, 7475
BspQI	GCTCTTC	3 cut(s)	60, 748, 5007
BspT107I	GGYRCC	2 cut(s)	3345, 5331
BspTI	CTTAAG	3 cut(s)	5312, 6059, 7355
BspTNI	GGTCTC	4 cut(s)	483, 2672, 7286, 7696
BsrBI	CCGCTC	2 cut(s)	2168, 3526
BsrDI	GCAATG	9 cut(s)	657, 1860, 2051, 2448, 3249, 4200, 4829, 5776, 6876
BsrGI	TGTACA	3 cut(s)	4735, 4833, 5736
BssECI	CCNNGG	9 cut(s)	162, 1682, 2337, 3993, 4551, 5169, 6572, 6573, 6994
BssHII	GCGCGC	1 cut(s)	83
BssNI	GRCGYC	2 cut(s)	949, 6113
BssSI	CACGAG	3 cut(s)	106, 828, 1086
BssT1I	CCWWGG	3 cut(s)	162, 4551, 6994
Bst2BI	CACGAG	3 cut(s)	106, 828, 1086
BstACI	GRCGYC	2 cut(s)	949, 6113
BstAFI	CTTAAG	3 cut(s)	5312, 6059, 7355
BstAPI	GCANNNNNTGC	9 cut(s)	998, 1283, 2083, 2350, 2615, 4777, 5522, 6496, 7343
BstAUI	TGTACA	3 cut(s)	4735, 4833, 5736
BstBAI	YACGTR	3 cut(s)	1535, 4986, 5444
BstH2I	RGCGCY	4 cut(s)	150, 3981, 4756, 5459
BstMCI	CGRYCG	2 cut(s)	118, 241
BstSLI	GKGCMC	6 cut(s)	2536, 3043, 3697, 5217, 7008, 7513
BstSNI	TACGTA	1 cut(s)	1535
BstV2I	GAAGAC	5 cut(s)	2287, 3190, 3848, 4507, 7045
BstX2I	RGATCY	7 cut(s)	2435, 2446, 2711, 4510, 6266, 6682, 6808
BstXI	CCANNNNNNTGG	2 cut(s)	1922, 7015
BstYI	RGATCY	7 cut(s)	2435, 2446, 2711, 4510, 6266, 6682, 6808
BstZI	CGGCCG	2 cut(s)	115, 238
Bsu36I	CCTNAGG	3 cut(s)	1407, 4788, 7230
BsuI	GTATCC	5 cut(s)	1681, 2530, 4603, 6019, 6983
BtgZI	GCGATG	3 cut(s)	1163, 2058, 6653
BtrI	CACGTC	1 cut(s)	2117
BtsI	GCAGTG	5 cut(s)	3034, 3053, 4123, 4309, 5215
BtuMI	TCGCGA	1 cut(s)	6668
BveI	ACCTGC	2 cut(s)	5248, 6763
CaiI	CAGNNNCTG	5 cut(s)	1283, 1301, 1988, 2633, 4904
CciI	TCATGA	1 cut(s)	3454
CciNI	GCGGCCGC	1 cut(s)	115
Cfr9I	CCCGGG	1 cut(s)	6572
CseI	GACGC	6 cut(s)	195, 957, 2298, 3394, 6102, 7701
DraI	TTTAAA	3 cut(s)	439, 480, 4867
DraIII	CACNNNGTG	2 cut(s)	1874, 5399
DriI	GACNNNNNGTC	2 cut(s)	5590, 6099
EaeI	YGGCCR	5 cut(s)	115, 238, 1174, 1830, 4433
EagI	CGGCCG	2 cut(s)	115, 238
Eam1105I	GACNNNNNGTC	2 cut(s)	5590, 6099
Ecl136II	GAGCTC	1 cut(s)	252
EclXI	CGGCCG	2 cut(s)	115, 238
Eco105I	TACGTA	1 cut(s)	1535
Eco130I	CCWWGG	3 cut(s)	162, 4551, 6994
Eco147I	AGGCCT	2 cut(s)	1653, 2822
Eco24I	GRGCYC	3 cut(s)	254, 2536, 7513
Eco31I	GGTCTC	4 cut(s)	483, 2672, 7286, 7696
Eco32I	GATATC	2 cut(s)	2931, 2963
Eco52I	CGGCCG	2 cut(s)	115, 238
Eco53kI	GAGCTC	1 cut(s)	252
Eco81I	CCTNAGG	3 cut(s)	1407, 4788, 7230
Eco88I	CYCGRG	3 cut(s)	142, 5646, 6572
EcoICRI	GAGCTC	1 cut(s)	252
EcoO109I	RGGNCCY	6 cut(s)	2532, 2533, 3281, 4784, 7509, 7531
EcoRI	GAATTC	3 cut(s)	2741, 6073, 7540
EcoRV	GATATC	2 cut(s)	2931, 2963
EcoT14I	CCWWGG	3 cut(s)	162, 4551, 6994
EcoT22I	ATGCAT	6 cut(s)	1263, 1370, 4829, 5436, 6501, 7495
EcoT38I	GRGCYC	3 cut(s)	254, 2536, 7513
ErhI	CCWWGG	3 cut(s)	162, 4551, 6994
Esp3I	CGTCTC	1 cut(s)	2281
FaqI	GGGAC	5 cut(s)	1370, 1453, 3267, 6737, 7544
FauI	CCCGC	4 cut(s)	2173, 2544, 2656, 7521
FauNDI	CATATG	4 cut(s)	601, 5707, 5727, 6232
FbaI	TGATCA	3 cut(s)	2764, 6979, 7744
FblI	GTMKAC	4 cut(s)	2128, 5288, 6399, 6909
FriOI	GRGCYC	3 cut(s)	254, 2536, 7513
FspAI	RTGCGCAY	1 cut(s)	5135
FspI	TGCGCA	3 cut(s)	1761, 5135, 7605
GsaI	CCCAGC	3 cut(s)	377, 3640, 7632
HaeII	RGCGCY	4 cut(s)	150, 3981, 4756, 5459
HgaI	GACGC	6 cut(s)	195, 957, 2298, 3394, 6102, 7701
Hin1I	GRCGYC	2 cut(s)	949, 6113
HincII	GTYRAC	6 cut(s)	2129, 3436, 5541, 6718, 6910, 7716
HindII	GTYRAC	6 cut(s)	2129, 3436, 5541, 6718, 6910, 7716
HindIII	AAGCTT	5 cut(s)	3459, 4527, 4743, 6137, 6479
Hpy99I	CGWCG	7 cut(s)	203, 206, 211, 417, 1938, 2118, 6673
Hsp92I	GRCGYC	2 cut(s)	949, 6113
Kpn2I	TCCGGA	1 cut(s)	3142
KpnI	GGTACC	1 cut(s)	5335
Ksp22I	TGATCA	3 cut(s)	2764, 6979, 7744
LguI	GCTCTTC	3 cut(s)	60, 748, 5007
MbiI	CCGCTC	2 cut(s)	2168, 3526
MflI	RGATCY	7 cut(s)	2435, 2446, 2711, 4510, 6266, 6682, 6808
MlsI	TGGCCA	2 cut(s)	1176, 4435
MluNI	TGGCCA	2 cut(s)	1176, 4435
Mox20I	TGGCCA	2 cut(s)	1176, 4435
Mph1103I	ATGCAT	6 cut(s)	1263, 1370, 4829, 5436, 6501, 7495
MroI	TCCGGA	1 cut(s)	3142
MroXI	GAANNNNTTC	3 cut(s)	1621, 1971, 7377
MscI	TGGCCA	2 cut(s)	1176, 4435
MslI	CAYNNNNRTG	7 cut(s)	897, 1071, 1733, 2705, 2772, 4281, 5949
Msp20I	TGGCCA	2 cut(s)	1176, 4435
MspCI	CTTAAG	3 cut(s)	5312, 6059, 7355
Mva1269I	GAATGC	3 cut(s)	2344, 6161, 7493
NciI	CCSGG	5 cut(s)	242, 1320, 4005, 6573, 6574
NdeI	CATATG	4 cut(s)	601, 5707, 5727, 6232
NheI	GCTAGC	4 cut(s)	5408, 6523, 7181, 7471
NotI	GCGGCCGC	1 cut(s)	115
NruI	TCGCGA	1 cut(s)	6668
NsbI	TGCGCA	3 cut(s)	1761, 5135, 7605
NsiI	ATGCAT	6 cut(s)	1263, 1370, 4829, 5436, 6501, 7495
OliI	CACNNNNGTG	1 cut(s)	2705
PaeI	GCATGC	4 cut(s)	1368, 2090, 5438, 7493
PaeR7I	CTCGAG	1 cut(s)	142
PagI	TCATGA	1 cut(s)	3454
PauI	GCGCGC	1 cut(s)	83
PceI	AGGCCT	2 cut(s)	1653, 2822
PciI	ACATGT	3 cut(s)	1567, 4447, 7190
PciSI	GCTCTTC	3 cut(s)	60, 748, 5007
PcsI	WCGNNNNNNNCGW	3 cut(s)	3676, 3685, 5799
PctI	GAATGC	3 cut(s)	2344, 6161, 7493
PdmI	GAANNNNTTC	3 cut(s)	1621, 1971, 7377
Pfl23II	CGTACG	1 cut(s)	195
PflMI	CCANNNNNTGG	4 cut(s)	878, 1379, 2456, 6500
PfoI	TCCNGGA	4 cut(s)	847, 1318, 2197, 4003
Ppu21I	YACGTR	3 cut(s)	1535, 4986, 5444
PpuMI	RGGWCCY	2 cut(s)	3281, 7531
PscI	ACATGT	3 cut(s)	1567, 4447, 7190
PsiI	TTATAA	2 cut(s)	5505, 7566
Psp124BI	GAGCTC	1 cut(s)	254
Psp5II	RGGWCCY	2 cut(s)	3281, 7531
PspFI	CCCAGC	3 cut(s)	373, 3636, 7628
PspLI	CGTACG	1 cut(s)	195
PspOMI	GGGCCC	2 cut(s)	2532, 7509
PspPPI	RGGWCCY	2 cut(s)	3281, 7531
PsrI	GAACNNNNNNTAC	2 cut(s)	5476, 5508
PstI	CTGCAG	8 cut(s)	994, 1561, 1651, 4087, 4761, 5371, 5518, 6463
PstNI	CAGNNNCTG	5 cut(s)	1283, 1301, 1988, 2633, 4904
PsuI	RGATCY	7 cut(s)	2435, 2446, 2711, 4510, 6266, 6682, 6808
PteI	GCGCGC	1 cut(s)	83
PvuII	CAGCTG	7 cut(s)	1283, 2570, 3449, 4190, 5519, 6377, 6458
RruI	TCGCGA	1 cut(s)	6668
RseI	CAYNNNNRTG	7 cut(s)	897, 1071, 1733, 2705, 2772, 4281, 5949
SacI	GAGCTC	1 cut(s)	254
SalI	GTCGAC	2 cut(s)	2127, 6908
SapI	GCTCTTC	3 cut(s)	60, 748, 5007
SbfI	CCTGCAGG	1 cut(s)	4761
ScaI	AGTACT	1 cut(s)	7377
SdaI	CCTGCAGG	1 cut(s)	4761
Sfr274I	CTCGAG	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	142
SmaI	CCCGGG	1 cut(s)	6574
SmiMI	CAYNNNNRTG	7 cut(s)	897, 1071, 1733, 2705, 2772, 4281, 5949
SnaBI	TACGTA	1 cut(s)	1535
SpeI	ACTAGT	3 cut(s)	5197, 7012, 7214
SphI	GCATGC	4 cut(s)	1368, 2090, 5438, 7493
Sse8387I	CCTGCAGG	1 cut(s)	4761
SseBI	AGGCCT	2 cut(s)	1653, 2822
SspI	AATATT	3 cut(s)	4539, 4642, 5189
SstI	GAGCTC	1 cut(s)	254
StuI	AGGCCT	2 cut(s)	1653, 2822
StyI	CCWWGG	3 cut(s)	162, 4551, 6994
TaqI	TCGA	9 cut(s)	63, 143, 216, 979, 1009, 2128, 2411, 6909, 7700
TaqII	GACCGA	2 cut(s)	359, 4519
TatI	WGTACW	7 cut(s)	4735, 4833, 5736, 5866, 6961, 7375, 7517
TspGWI	ACGGA	2 cut(s)	430, 7517
TspMI	CCCGGG	1 cut(s)	6572
Van91I	CCANNNNNTGG	4 cut(s)	878, 1379, 2456, 6500
Vha464I	CTTAAG	3 cut(s)	5312, 6059, 7355
VneI	GTGCAC	1 cut(s)	5213
XbaI	TCTAGA	1 cut(s)	2183
XcmI	CCANNNNNNNNNTGG	8 cut(s)	160, 795, 4064, 4224, 5628, 6019, 6366, 6624
XhoI	CTCGAG	1 cut(s)	142
XmaI	CCCGGG	1 cut(s)	6572
XmiI	GTMKAC	4 cut(s)	2128, 5288, 6399, 6909
XmnI	GAANNNNTTC	3 cut(s)	1621, 1971, 7377
ZrmI	AGTACT	1 cut(s)	7377
Zsp2I	ATGCAT	6 cut(s)	1263, 1370, 4829, 5436, 6501, 7495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.