DnaJ homolog subfamily C
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G26890 |
| fragaria_vesca | FvH4_1g04290 FvH4_1g04290 FvH4_1g04983 |
| malus_domestica | MD02G1042600.v1.1 MD15G1181200.v1.1 |
| prunus_persica | Prupe.7G234400_v2.0.a1 Prupe.7G234400_v2.0.a1 |
| pyrus_communis | pycom02g03540 pycom15g16350 |
| rosa_chinensis | RchiOBHm_Chr2g0089861 |
| rosa_laevigata | RLG00000016062 |
| rosa_multiflora | Rmu_co8299847.1_g000001 Rmu_sc0002384.1_g000010 |
| rosa_roxburghii | Rroxscaffold_2G00151530 |
| rosa_rugosa | Rorug02G0003700 |
| rosa_samantha | Rh2AG049000 Rh2BG047900 Rh2CG050000 Rh2DG049100 |
| rosa_wichuraiana | Rw2G004120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2943 |
| Acc65I | GGTACC | 1 cut(s) | 2769 |
| AccB1I | GGYRCC | 1 cut(s) | 2769 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3938, 4214 |
| AccBSI | CCGCTC | 2 cut(s) | 964, 1685 |
| AccI | GTMKAC | 1 cut(s) | 3837 |
| AccII | CGCG | 2 cut(s) | 4131, 4149 |
| AccIII | TCCGGA | 2 cut(s) | 1836, 3427 |
| AciI | CCGC | 9 cut(s) | 962, 1108, 1298, 1350, 1685, 2399, 2954, 4129, 4218 |
| AclI | AACGTT | 1 cut(s) | 3959 |
| AcoI | YGGCCR | 4 cut(s) | 1871, 1940, 3786, 3925 |
| AcsI | RAATTY | 8 cut(s) | 176, 2594, 3101, 3476, 3500, 3511, 3544, 3873 |
| AcuI | CTGAAG | 4 cut(s) | 1977, 2169, 2771, 2774 |
| AcyI | GRCGYC | 1 cut(s) | 3551 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 153, 728, 2022, 2398, 3825, 3938, 4214 |
| AflII | CTTAAG | 2 cut(s) | 1361, 3518 |
| AflIII | ACRYGT | 3 cut(s) | 1885, 2423, 2713 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 717, 3537 |
| AhlI | ACTAGT | 1 cut(s) | 2635 |
| AjiI | CACGTC | 1 cut(s) | 2424 |
| AjnI | CCWGG | 4 cut(s) | 316, 1431, 1441, 4009 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1936, 1968, 3186, 3218 |
| AleI | CACNNNNGTG | 1 cut(s) | 133 |
| Alw21I | GWGCWC | 4 cut(s) | 523, 669, 1000, 2386 |
| Alw26I | GTCTC | 5 cut(s) | 248, 329, 1746, 3365, 4043 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2342 |
| Ama87I | CYCGRG | 1 cut(s) | 3084 |
| Aor13HI | TCCGGA | 2 cut(s) | 1836, 3427 |
| ApoI | RAATTY | 8 cut(s) | 176, 2594, 3101, 3476, 3500, 3511, 3544, 3873 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3536, 3568 |
| AseI | ATTAAT | 1 cut(s) | 1056 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3762 |
| Asp718I | GGTACC | 1 cut(s) | 2769 |
| AspLEI | GCGC | 2 cut(s) | 596, 2193 |
| AspS9I | GGNCC | 8 cut(s) | 719, 1007, 1610, 2222, 2610, 3131, 3941, 4007 |
| AsuC2I | CCSGG | 1 cut(s) | 238 |
| AsuHPI | GGTGA | 7 cut(s) | 1187, 1523, 1733, 1814, 2054, 3048, 4025 |
| AvaI | CYCGRG | 1 cut(s) | 3084 |
| AvaII | GGWCC | 4 cut(s) | 719, 1007, 1610, 3131 |
| BaeGI | GKGCMC | 2 cut(s) | 481, 734 |
| BalI | TGGCCA | 3 cut(s) | 1873, 3788, 3927 |
| BanI | GGYRCC | 1 cut(s) | 2769 |
| BanII | GRGCYC | 1 cut(s) | 669 |
| BauI | CACGAG | 1 cut(s) | 2020 |
| BbsI | GAAGAC | 2 cut(s) | 628, 3428 |
| Bbv12I | GWGCWC | 4 cut(s) | 523, 669, 1000, 2386 |
| BbvCI | CCTCAGC | 1 cut(s) | 267 |
| BceAI | ACGGC | 4 cut(s) | 1955, 2156, 2284, 4004 |
| BciT130I | CCWGG | 4 cut(s) | 318, 1433, 1443, 4011 |
| BclI | TGATCA | 1 cut(s) | 199 |
| BcnI | CCSGG | 1 cut(s) | 238 |
| BcoDI | GTCTC | 5 cut(s) | 248, 329, 1746, 3365, 4043 |
| BcuI | ACTAGT | 1 cut(s) | 2635 |
| BfmI | CTRYAG | 4 cut(s) | 1521, 1629, 2195, 2805 |
| BfoI | RGCGCY | 1 cut(s) | 2194 |
| BfrI | CTTAAG | 2 cut(s) | 1361, 3518 |
| BglII | AGATCT | 1 cut(s) | 4120 |
| Bme1390I | CCNGG | 5 cut(s) | 238, 318, 1433, 1443, 4011 |
| Bme18I | GGWCC | 4 cut(s) | 719, 1007, 1610, 3131 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 717, 3537 |
| BmeT110I | CYCGRG | 1 cut(s) | 3084 |
| BmgBI | CACGTC | 1 cut(s) | 2424 |
| BmgT120I | GGNCC | 8 cut(s) | 719, 1007, 1610, 2222, 2610, 3131, 3941, 4007 |
| BmiI | GGNNCC | 6 cut(s) | 721, 960, 1348, 2298, 2771, 3132 |
| BmrFI | CCNGG | 5 cut(s) | 238, 318, 1433, 1443, 4011 |
| BpiI | GAAGAC | 2 cut(s) | 628, 3428 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2373, 2405 |
| BpmI | CTGGAG | 6 cut(s) | 300, 1257, 1344, 1638, 2315, 2684 |
| Bpu10I | CCTNAGC | 7 cut(s) | 110, 267, 1308, 2226, 2985, 3644, 4170 |
| BpuEI | CTTGAG | 4 cut(s) | 476, 950, 2687, 3238 |
| BpuMI | CCSGG | 1 cut(s) | 238 |
| Bsa29I | ATCGAT | 1 cut(s) | 142 |
| BsaAI | YACGTR | 1 cut(s) | 2882 |
| BsaBI | GATNNNNATC | 2 cut(s) | 204, 3162 |
| BsaHI | GRCGYC | 1 cut(s) | 3551 |
| BsaI | GGTCTC | 1 cut(s) | 4043 |
| BsaJI | CCNNGG | 5 cut(s) | 1386, 1431, 1989, 2231, 4110 |
| BsaWI | WCCGGW | 3 cut(s) | 132, 1836, 3427 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 153, 728, 2022, 2398, 3825, 3938, 4214 |
| Bse1I | ACTGG | 4 cut(s) | 349, 1100, 1784, 2994 |
| Bse3DI | GCAATG | 4 cut(s) | 491, 2653, 3214, 4083 |
| Bse8I | GATNNNNATC | 2 cut(s) | 204, 3162 |
| BseAI | TCCGGA | 2 cut(s) | 1836, 3427 |
| BseBI | CCWGG | 4 cut(s) | 318, 1433, 1443, 4011 |
| BseCI | ATCGAT | 1 cut(s) | 142 |
| BseDI | CCNNGG | 5 cut(s) | 1386, 1431, 1989, 2231, 4110 |
| BseJI | GATNNNNATC | 2 cut(s) | 204, 3162 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 153, 728, 2022, 2398, 3825, 3938, 4214 |
| BseMI | GCAATG | 4 cut(s) | 491, 2653, 3214, 4083 |
| BseNI | ACTGG | 4 cut(s) | 349, 1100, 1784, 2994 |
| BseRI | GAGGAG | 3 cut(s) | 660, 1940, 2060 |
| BseSI | GKGCMC | 2 cut(s) | 481, 734 |
| BseYI | CCCAGC | 2 cut(s) | 1074, 3745 |
| BsgI | GTGCAG | 4 cut(s) | 231, 1197, 3426, 4080 |
| Bsh1236I | CGCG | 2 cut(s) | 4131, 4149 |
| BshNI | GGYRCC | 1 cut(s) | 2769 |
| BshVI | ATCGAT | 1 cut(s) | 142 |
| BsiHKAI | GWGCWC | 4 cut(s) | 523, 669, 1000, 2386 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3084 |
| BsiSI | CCGG | 4 cut(s) | 133, 238, 1837, 3428 |
| BsiWI | CGTACG | 1 cut(s) | 299 |
| BslFI | GGGAC | 3 cut(s) | 705, 1133, 3590 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 153, 728, 2022, 2398, 3825, 3938, 4214 |
| BsmAI | GTCTC | 5 cut(s) | 248, 329, 1746, 3365, 4043 |
| BsmFI | GGGAC | 3 cut(s) | 705, 1133, 3590 |
| BsmI | GAATGC | 3 cut(s) | 17, 2026, 3599 |
| Bso31I | GGTCTC | 1 cut(s) | 4043 |
| BsoBI | CYCGRG | 1 cut(s) | 3084 |
| Bsp1286I | GDGCHC | 6 cut(s) | 481, 523, 669, 734, 1000, 2386 |
| Bsp13I | TCCGGA | 2 cut(s) | 1836, 3427 |
| Bsp1407I | TGTACA | 2 cut(s) | 2271, 2851 |
| Bsp19I | CCATGG | 1 cut(s) | 4110 |
| BspACI | CCGC | 9 cut(s) | 962, 1108, 1298, 1350, 1685, 2399, 2954, 4129, 4218 |
| BspDI | ATCGAT | 1 cut(s) | 142 |
| BspEI | TCCGGA | 2 cut(s) | 1836, 3427 |
| BspFNI | CGCG | 2 cut(s) | 4131, 4149 |
| BspHI | TCATGA | 2 cut(s) | 21, 892 |
| BspLI | GGNNCC | 6 cut(s) | 721, 960, 1348, 2298, 2771, 3132 |
| BspMAI | CTGCAG | 4 cut(s) | 1525, 1633, 2199, 2809 |
| BspQI | GCTCTTC | 1 cut(s) | 2445 |
| BspT107I | GGYRCC | 1 cut(s) | 2769 |
| BspTI | CTTAAG | 2 cut(s) | 1361, 3518 |
| BspTNI | GGTCTC | 1 cut(s) | 4043 |
| BsrBI | CCGCTC | 2 cut(s) | 964, 1685 |
| BsrDI | GCAATG | 4 cut(s) | 491, 2653, 3214, 4083 |
| BsrGI | TGTACA | 2 cut(s) | 2271, 2851 |
| BsrI | ACTGG | 4 cut(s) | 349, 1100, 1784, 2994 |
| BssECI | CCNNGG | 5 cut(s) | 1386, 1431, 1989, 2231, 4110 |
| BssNI | GRCGYC | 1 cut(s) | 3551 |
| BssSI | CACGAG | 1 cut(s) | 2020 |
| BssT1I | CCWWGG | 4 cut(s) | 1386, 1989, 2231, 4110 |
| Bst2BI | CACGAG | 1 cut(s) | 2020 |
| Bst2UI | CCWGG | 4 cut(s) | 318, 1433, 1443, 4011 |
| Bst6I | CTCTTC | 4 cut(s) | 1094, 1478, 1537, 2445 |
| BstACI | GRCGYC | 1 cut(s) | 3551 |
| BstAFI | CTTAAG | 2 cut(s) | 1361, 3518 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2215, 2435, 4103 |
| BstAUI | TGTACA | 2 cut(s) | 2271, 2851 |
| BstBAI | YACGTR | 1 cut(s) | 2882 |
| BstDSI | CCRYGG | 1 cut(s) | 4110 |
| BstFNI | CGCG | 2 cut(s) | 4131, 4149 |
| BstH2I | RGCGCY | 1 cut(s) | 2194 |
| BstHHI | GCGC | 2 cut(s) | 596, 2193 |
| BstMAI | GTCTC | 5 cut(s) | 248, 329, 1746, 3365, 4043 |
| BstNI | CCWGG | 4 cut(s) | 318, 1433, 1443, 4011 |
| BstNSI | RCATGY | 4 cut(s) | 1889, 2509, 2717, 2876 |
| BstSCI | CCNGG | 5 cut(s) | 236, 316, 1431, 1441, 4009 |
| BstSFI | CTRYAG | 4 cut(s) | 1521, 1629, 2195, 2805 |
| BstSLI | GKGCMC | 2 cut(s) | 481, 734 |
| BstUI | CGCG | 2 cut(s) | 4131, 4149 |
| BstV2I | GAAGAC | 2 cut(s) | 628, 3428 |
| BstX2I | RGATCY | 5 cut(s) | 1445, 1948, 2616, 3704, 4120 |
| BstYI | RGATCY | 5 cut(s) | 1445, 1948, 2616, 3704, 4120 |
| Bsu15I | ATCGAT | 1 cut(s) | 142 |
| BsuTUI | ATCGAT | 1 cut(s) | 142 |
| BtgI | CCRYGG | 1 cut(s) | 4110 |
| BtgZI | GCGATG | 2 cut(s) | 695, 770 |
| BtrI | CACGTC | 1 cut(s) | 2424 |
| BtsI | GCAGTG | 8 cut(s) | 35, 472, 732, 1561, 1638, 1747, 2526, 2802 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2342 |
| CciI | TCATGA | 2 cut(s) | 21, 892 |
| CfoI | GCGC | 2 cut(s) | 596, 2193 |
| Cfr13I | GGNCC | 8 cut(s) | 719, 1007, 1610, 2222, 2610, 3131, 3941, 4007 |
| ClaI | ATCGAT | 1 cut(s) | 142 |
| CseI | GACGC | 2 cut(s) | 2286, 3540 |
| DraI | TTTAAA | 1 cut(s) | 2305 |
| DriI | GACNNNNNGTC | 2 cut(s) | 717, 3537 |
| EaeI | YGGCCR | 4 cut(s) | 1871, 1940, 3786, 3925 |
| Eam1104I | CTCTTC | 4 cut(s) | 1094, 1478, 1537, 2445 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 717, 3537 |
| EarI | CTCTTC | 4 cut(s) | 1094, 1478, 1537, 2445 |
| EciI | GGCGGA | 1 cut(s) | 4233 |
| Ecl136II | GAGCTC | 1 cut(s) | 667 |
| Eco130I | CCWWGG | 4 cut(s) | 1386, 1989, 2231, 4110 |
| Eco147I | AGGCCT | 1 cut(s) | 95 |
| Eco24I | GRGCYC | 1 cut(s) | 669 |
| Eco31I | GGTCTC | 1 cut(s) | 4043 |
| Eco32I | GATATC | 3 cut(s) | 369, 401, 2052 |
| Eco47I | GGWCC | 4 cut(s) | 719, 1007, 1610, 3131 |
| Eco53kI | GAGCTC | 1 cut(s) | 667 |
| Eco57I | CTGAAG | 4 cut(s) | 1977, 2169, 2771, 2774 |
| Eco88I | CYCGRG | 1 cut(s) | 3084 |
| EcoICRI | GAGCTC | 1 cut(s) | 667 |
| EcoO109I | RGGNCCY | 3 cut(s) | 719, 2222, 3131 |
| EcoRI | GAATTC | 2 cut(s) | 176, 3511 |
| EcoRII | CCWGG | 4 cut(s) | 316, 1431, 1441, 4009 |
| EcoRV | GATATC | 3 cut(s) | 369, 401, 2052 |
| EcoT14I | CCWWGG | 4 cut(s) | 1386, 1989, 2231, 4110 |
| EcoT22I | ATGCAT | 2 cut(s) | 2874, 3939 |
| EcoT38I | GRGCYC | 1 cut(s) | 669 |
| ErhI | CCWWGG | 4 cut(s) | 1386, 1989, 2231, 4110 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2079, 2111, 3750, 3782, 4267, 4299 |
| FaqI | GGGAC | 3 cut(s) | 705, 1133, 3590 |
| FauI | CCCGC | 1 cut(s) | 1101 |
| FauNDI | CATATG | 2 cut(s) | 3145, 3670 |
| FbaI | TGATCA | 1 cut(s) | 199 |
| FblI | GTMKAC | 1 cut(s) | 3837 |
| FriOI | GRGCYC | 1 cut(s) | 669 |
| GlaI | GCGC | 2 cut(s) | 595, 2192 |
| GsaI | CCCAGC | 2 cut(s) | 1078, 3749 |
| GsuI | CTGGAG | 6 cut(s) | 300, 1257, 1344, 1638, 2315, 2684 |
| HaeII | RGCGCY | 1 cut(s) | 2194 |
| HapII | CCGG | 4 cut(s) | 133, 238, 1837, 3428 |
| HgaI | GACGC | 2 cut(s) | 2286, 3540 |
| HhaI | GCGC | 2 cut(s) | 596, 2193 |
| Hin1I | GRCGYC | 1 cut(s) | 3551 |
| Hin6I | GCGC | 2 cut(s) | 594, 2191 |
| HinP1I | GCGC | 2 cut(s) | 594, 2191 |
| HincII | GTYRAC | 3 cut(s) | 11, 1932, 2979 |
| HindII | GTYRAC | 3 cut(s) | 11, 1932, 2979 |
| HindIII | AAGCTT | 6 cut(s) | 406, 1965, 2093, 2181, 2987, 3917 |
| HpaII | CCGG | 4 cut(s) | 133, 238, 1837, 3428 |
| HphI | GGTGA | 7 cut(s) | 1187, 1523, 1733, 1814, 2054, 3048, 4025 |
| HpyCH4IV | ACGT | 7 cut(s) | 445, 1288, 1603, 2423, 2881, 3118, 3959 |
| HpySE526I | ACGT | 7 cut(s) | 445, 1288, 1603, 2423, 2881, 3118, 3959 |
| Hsp92I | GRCGYC | 1 cut(s) | 3551 |
| HspAI | GCGC | 2 cut(s) | 594, 2191 |
| Kpn2I | TCCGGA | 2 cut(s) | 1836, 3427 |
| KpnI | GGTACC | 1 cut(s) | 2773 |
| Ksp22I | TGATCA | 1 cut(s) | 199 |
| LguI | GCTCTTC | 1 cut(s) | 2445 |
| LmnI | GCTCC | 7 cut(s) | 108, 295, 319, 995, 1777, 2296, 3679 |
| MaeII | ACGT | 7 cut(s) | 445, 1288, 1603, 2423, 2881, 3118, 3959 |
| MaeIII | GTNAC | 9 cut(s) | 611, 1246, 1372, 1786, 1820, 1847, 2338, 2557, 3054 |
| MbiI | CCGCTC | 2 cut(s) | 964, 1685 |
| MfeI | CAATTG | 2 cut(s) | 1461, 1875 |
| MflI | RGATCY | 5 cut(s) | 1445, 1948, 2616, 3704, 4120 |
| MhlI | GDGCHC | 6 cut(s) | 481, 523, 669, 734, 1000, 2386 |
| MlsI | TGGCCA | 3 cut(s) | 1873, 3788, 3927 |
| MluNI | TGGCCA | 3 cut(s) | 1873, 3788, 3927 |
| MlyI | GAGTC | 7 cut(s) | 1155, 1477, 1663, 2295, 2792, 3062, 3418 |
| MmeI | TCCRAC | 2 cut(s) | 985, 1071 |
| Mox20I | TGGCCA | 3 cut(s) | 1873, 3788, 3927 |
| Mph1103I | ATGCAT | 2 cut(s) | 2874, 3939 |
| MroI | TCCGGA | 2 cut(s) | 1836, 3427 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3762 |
| MscI | TGGCCA | 3 cut(s) | 1873, 3788, 3927 |
| MslI | CAYNNNNRTG | 4 cut(s) | 133, 207, 1509, 1719 |
| Msp20I | TGGCCA | 3 cut(s) | 1873, 3788, 3927 |
| MspA1I | CMGCKG | 3 cut(s) | 1616, 1628, 3815 |
| MspCI | CTTAAG | 2 cut(s) | 1361, 3518 |
| MspI | CCGG | 4 cut(s) | 133, 238, 1837, 3428 |
| MspR9I | CCNGG | 5 cut(s) | 238, 318, 1433, 1443, 4011 |
| MunI | CAATTG | 2 cut(s) | 1461, 1875 |
| Mva1269I | GAATGC | 3 cut(s) | 17, 2026, 3599 |
| MvaI | CCWGG | 4 cut(s) | 318, 1433, 1443, 4011 |
| MvnI | CGCG | 2 cut(s) | 4131, 4149 |
| NciI | CCSGG | 1 cut(s) | 238 |
| NcoI | CCATGG | 1 cut(s) | 4110 |
| NdeI | CATATG | 2 cut(s) | 3145, 3670 |
| NlaIV | GGNNCC | 6 cut(s) | 721, 960, 1348, 2298, 2771, 3132 |
| NmeAIII | GCCGAG | 1 cut(s) | 2638 |
| NmuCI | GTSAC | 5 cut(s) | 611, 1786, 1820, 1847, 3054 |
| NsiI | ATGCAT | 2 cut(s) | 2874, 3939 |
| NspI | RCATGY | 4 cut(s) | 1889, 2509, 2717, 2876 |
| OliI | CACNNNNGTG | 1 cut(s) | 133 |
| PaeI | GCATGC | 1 cut(s) | 2876 |
| PagI | TCATGA | 2 cut(s) | 21, 892 |
| PceI | AGGCCT | 1 cut(s) | 95 |
| PciI | ACATGT | 2 cut(s) | 1885, 2713 |
| PciSI | GCTCTTC | 1 cut(s) | 2445 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1123 |
| PctI | GAATGC | 3 cut(s) | 17, 2026, 3599 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3762 |
| Pfl23II | CGTACG | 1 cut(s) | 299 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3938, 4214 |
| PfoI | TCCNGGA | 2 cut(s) | 316, 1441 |
| PleI | GAGTC | 7 cut(s) | 1154, 1477, 1663, 2294, 2792, 3061, 3418 |
| PpsI | GAGTC | 7 cut(s) | 1154, 1477, 1663, 2294, 2792, 3061, 3418 |
| Ppu21I | YACGTR | 1 cut(s) | 2882 |
| PpuMI | RGGWCCY | 2 cut(s) | 719, 3131 |
| PscI | ACATGT | 2 cut(s) | 1885, 2713 |
| PshBI | ATTAAT | 1 cut(s) | 1056 |
| PsiI | TTATAA | 1 cut(s) | 2943 |
| Psp124BI | GAGCTC | 1 cut(s) | 669 |
| Psp1406I | AACGTT | 1 cut(s) | 3959 |
| Psp5II | RGGWCCY | 2 cut(s) | 719, 3131 |
| Psp6I | CCWGG | 4 cut(s) | 316, 1431, 1441, 4009 |
| PspFI | CCCAGC | 2 cut(s) | 1074, 3745 |
| PspGI | CCWGG | 4 cut(s) | 316, 1431, 1441, 4009 |
| PspLI | CGTACG | 1 cut(s) | 299 |
| PspN4I | GGNNCC | 6 cut(s) | 721, 960, 1348, 2298, 2771, 3132 |
| PspPI | GGNCC | 8 cut(s) | 719, 1007, 1610, 2222, 2610, 3131, 3941, 4007 |
| PspPPI | RGGWCCY | 2 cut(s) | 719, 3131 |
| PstI | CTGCAG | 4 cut(s) | 1525, 1633, 2199, 2809 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2342 |
| PsuI | RGATCY | 5 cut(s) | 1445, 1948, 2616, 3704, 4120 |
| PvuII | CAGCTG | 3 cut(s) | 1616, 1628, 3815 |
| RseI | CAYNNNNRTG | 4 cut(s) | 133, 207, 1509, 1719 |
| SacI | GAGCTC | 1 cut(s) | 669 |
| SapI | GCTCTTC | 1 cut(s) | 2445 |
| Sau96I | GGNCC | 8 cut(s) | 719, 1007, 1610, 2222, 2610, 3131, 3941, 4007 |
| SbfI | CCTGCAGG | 1 cut(s) | 2199 |
| SchI | GAGTC | 7 cut(s) | 1155, 1477, 1663, 2295, 2792, 3062, 3418 |
| ScrFI | CCNGG | 5 cut(s) | 238, 318, 1433, 1443, 4011 |
| SdaI | CCTGCAGG | 1 cut(s) | 2199 |
| SduI | GDGCHC | 6 cut(s) | 481, 523, 669, 734, 1000, 2386 |
| SfcI | CTRYAG | 4 cut(s) | 1521, 1629, 2195, 2805 |
| SinI | GGWCC | 4 cut(s) | 719, 1007, 1610, 3131 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 133, 207, 1509, 1719 |
| SmlI | CTYRAG | 6 cut(s) | 455, 965, 1361, 2666, 3217, 3518 |
| SmoI | CTYRAG | 6 cut(s) | 455, 965, 1361, 2666, 3217, 3518 |
| SpeI | ACTAGT | 1 cut(s) | 2635 |
| SphI | GCATGC | 1 cut(s) | 2876 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2199 |
| SseBI | AGGCCT | 1 cut(s) | 95 |
| SsiI | CCGC | 9 cut(s) | 962, 1108, 1298, 1350, 1685, 2399, 2954, 4129, 4218 |
| SspI | AATATT | 2 cut(s) | 1977, 2627 |
| SstI | GAGCTC | 1 cut(s) | 669 |
| StuI | AGGCCT | 1 cut(s) | 95 |
| StyD4I | CCNGG | 5 cut(s) | 236, 316, 1431, 1441, 4009 |
| StyI | CCWWGG | 4 cut(s) | 1386, 1989, 2231, 4110 |
| TaiI | ACGT | 7 cut(s) | 448, 1291, 1606, 2426, 2884, 3121, 3962 |
| TaqI | TCGA | 8 cut(s) | 122, 142, 1126, 1144, 1399, 2688, 3395, 4249 |
| TatI | WGTACW | 2 cut(s) | 2271, 2851 |
| TauI | GCSGC | 2 cut(s) | 2402, 2957 |
| TseFI | GTSAC | 5 cut(s) | 611, 1786, 1820, 1847, 3054 |
| Tsp45I | GTSAC | 5 cut(s) | 611, 1786, 1820, 1847, 3054 |
| TspGWI | ACGGA | 2 cut(s) | 317, 1688 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3938, 4214 |
| Vha464I | CTTAAG | 2 cut(s) | 1361, 3518 |
| VpaK11BI | GGWCC | 4 cut(s) | 719, 1007, 1610, 3131 |
| VspI | ATTAAT | 1 cut(s) | 1056 |
| XapI | RAATTY | 8 cut(s) | 176, 2594, 3101, 3476, 3500, 3511, 3544, 3873 |
| XceI | RCATGY | 4 cut(s) | 1889, 2509, 2717, 2876 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 369, 1662, 3066, 3935, 4281 |
| XmiI | GTMKAC | 1 cut(s) | 3837 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3762 |
| Zsp2I | ATGCAT | 2 cut(s) | 2874, 3939 |