DnaJ homolog subfamily C
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G26890 |
| fragaria_vesca | FvH4_1g04290 FvH4_1g04290 FvH4_1g04983 |
| malus_domestica | MD02G1042600.v1.1 MD15G1181200.v1.1 |
| prunus_persica | Prupe.7G234400_v2.0.a1 Prupe.7G234400_v2.0.a1 |
| pyrus_communis | pycom02g03540 pycom15g16350 |
| rosa_chinensis | RchiOBHm_Chr2g0089861 |
| rosa_laevigata | RLG00000016062 |
| rosa_multiflora | Rmu_co8299847.1_g000001 Rmu_sc0002384.1_g000010 |
| rosa_roxburghii | Rroxscaffold_2G00151530 |
| rosa_rugosa | Rorug02G0003700 |
| rosa_samantha | Rh2AG049000 Rh2BG047900 Rh2CG050000 Rh2DG049100 |
| rosa_wichuraiana | Rw2G004120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 5496, 7563 |
| Acc65I | GGTACC | 2 cut(s) | 5227, 5322 |
| AccB1I | GGYRCC | 6 cut(s) | 362, 1044, 3336, 5227, 5322, 6157 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 866, 1184, 1367, 6491, 6767 |
| AccBSI | CCGCTC | 1 cut(s) | 3517 |
| AccI | GTMKAC | 3 cut(s) | 2116, 6018, 6390 |
| AccII | CGCG | 4 cut(s) | 212, 228, 2031, 6684 |
| AccIII | TCCGGA | 1 cut(s) | 6607 |
| AcoI | YGGCCR | 8 cut(s) | 100, 223, 271, 1818, 2899, 4424, 6339, 7203 |
| AcyI | GRCGYC | 3 cut(s) | 363, 937, 6104 |
| AdeI | CACNNNGTG | 4 cut(s) | 1184, 1862, 5390, 7188 |
| AfeI | AGCGCT | 1 cut(s) | 7558 |
| AflII | CTTAAG | 1 cut(s) | 7352 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 6090 |
| AhlI | ACTAGT | 2 cut(s) | 5188, 7211 |
| AjiI | CACGTC | 3 cut(s) | 1071, 2105, 4977 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 4489, 4521, 5739, 5771, 7362, 7394, 7440, 7472 |
| AleI | CACNNNNGTG | 2 cut(s) | 2693, 7520 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 558, 590 |
| Alw21I | GWGCWC | 9 cut(s) | 2479, 3076, 3354, 4939, 5208, 5527, 5862, 6957, 7603 |
| Alw44I | GTGCAC | 3 cut(s) | 5204, 5858, 6953 |
| AlwNI | CAGNNNCTG | 8 cut(s) | 1136, 1271, 1976, 4270, 4895, 5237, 5882, 6452 |
| Ama87I | CYCGRG | 2 cut(s) | 56, 5637 |
| Aor13HI | TCCGGA | 1 cut(s) | 6607 |
| Aor51HI | AGCGCT | 1 cut(s) | 7558 |
| ApaI | GGGCCC | 1 cut(s) | 7510 |
| ApaLI | GTGCAC | 3 cut(s) | 5204, 5858, 6953 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1105, 1137, 6089, 6121 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1609, 6315, 7374 |
| Asp718I | GGTACC | 2 cut(s) | 5227, 5322 |
| AsuC2I | CCSGG | 1 cut(s) | 7051 |
| AsuII | TTCGAA | 2 cut(s) | 128, 6144 |
| AsuNHI | GCTAGC | 2 cut(s) | 7178, 7468 |
| AvaI | CYCGRG | 2 cut(s) | 56, 5637 |
| AvaII | GGWCC | 8 cut(s) | 151, 264, 1667, 3272, 3560, 4163, 5684, 6560 |
| AxyI | CCTNAGG | 3 cut(s) | 1395, 2515, 7227 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 5937, 5970 |
| BalI | TGGCCA | 2 cut(s) | 2901, 6341 |
| BamHI | GGATCC | 3 cut(s) | 626, 6257, 7103 |
| BanI | GGYRCC | 6 cut(s) | 362, 1044, 3336, 5227, 5322, 6157 |
| BanII | GRGCYC | 4 cut(s) | 57, 1014, 5527, 7510 |
| BauI | CACGAG | 2 cut(s) | 816, 2582 |
| BbsI | GAAGAC | 5 cut(s) | 2275, 2460, 3181, 3335, 4498 |
| Bbv12I | GWGCWC | 9 cut(s) | 2479, 3076, 3354, 4939, 5208, 5527, 5862, 6957, 7603 |
| BbvCI | CCTCAGC | 3 cut(s) | 1005, 2820, 4779 |
| BceAI | ACGGC | 9 cut(s) | 258, 286, 350, 1232, 1805, 2898, 4670, 5964, 7686 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 102, 136, 497, 531, 5339, 5373, 5404, 5438 |
| BciVI | GTATCC | 2 cut(s) | 1669, 2881 |
| BclI | TGATCA | 3 cut(s) | 2752, 5785, 6970 |
| BcnI | CCSGG | 1 cut(s) | 7051 |
| BcuI | ACTAGT | 2 cut(s) | 5188, 7211 |
| BfmI | CTRYAG | 8 cut(s) | 978, 1635, 4074, 4451, 4748, 5358, 5505, 5874 |
| BfoI | RGCGCY | 4 cut(s) | 366, 4747, 5450, 7560 |
| BfrI | CTTAAG | 1 cut(s) | 7352 |
| BfuI | GTATCC | 2 cut(s) | 1669, 2881 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 2188, 5444, 7670 |
| BglII | AGATCT | 2 cut(s) | 2423, 6673 |
| BlpI | GCTNAGC | 1 cut(s) | 1320 |
| BmcAI | AGTACT | 1 cut(s) | 7374 |
| Bme18I | GGWCC | 8 cut(s) | 151, 264, 1667, 3272, 3560, 4163, 5684, 6560 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 6090 |
| BmeT110I | CYCGRG | 2 cut(s) | 56, 5637 |
| BmgBI | CACGTC | 3 cut(s) | 1071, 2105, 4977 |
| BmtI | GCTAGC | 2 cut(s) | 7182, 7472 |
| BpiI | GAAGAC | 5 cut(s) | 2275, 2460, 3181, 3335, 4498 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 176, 208, 4926, 4958 |
| BpmI | CTGGAG | 9 cut(s) | 1434, 2520, 2892, 3810, 3897, 4191, 4868, 5237, 5331 |
| Bpu10I | CCTNAGC | 6 cut(s) | 1005, 2670, 2820, 3861, 4779, 6723 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1320 |
| Bpu14I | TTCGAA | 2 cut(s) | 128, 6144 |
| BpuEI | CTTGAG | 9 cut(s) | 1856, 2310, 3029, 3503, 5195, 5240, 5791, 5942, 7307 |
| BpuMI | CCSGG | 1 cut(s) | 7051 |
| BsaAI | YACGTR | 4 cut(s) | 1523, 5435, 6222, 7157 |
| BsaBI | GATNNNNATC | 6 cut(s) | 2145, 2241, 2320, 2415, 2757, 6678 |
| BsaHI | GRCGYC | 3 cut(s) | 363, 937, 6104 |
| BsaI | GGTCTC | 2 cut(s) | 468, 7693 |
| BsaJI | CCNNGG | 9 cut(s) | 147, 274, 1670, 2186, 3939, 3984, 4784, 6630, 7050 |
| BsaWI | WCCGGW | 2 cut(s) | 379, 6607 |
| Bse21I | CCTNAGG | 3 cut(s) | 1395, 2515, 7227 |
| Bse3DI | GCAATG | 9 cut(s) | 1848, 2039, 3044, 3240, 3866, 4191, 6431, 6867, 7510 |
| Bse8I | GATNNNNATC | 6 cut(s) | 2145, 2241, 2320, 2415, 2757, 6678 |
| BseAI | TCCGGA | 1 cut(s) | 6607 |
| BseDI | CCNNGG | 9 cut(s) | 147, 274, 1670, 2186, 3939, 3984, 4784, 6630, 7050 |
| BseJI | GATNNNNATC | 6 cut(s) | 2145, 2241, 2320, 2415, 2757, 6678 |
| BseMI | GCAATG | 9 cut(s) | 1848, 2039, 3044, 3240, 3866, 4191, 6431, 6867, 7510 |
| BseRI | GAGGAG | 4 cut(s) | 1022, 3213, 4493, 4613 |
| BseX3I | CGGCCG | 2 cut(s) | 223, 271 |
| BseYI | CCCAGC | 2 cut(s) | 3627, 7625 |
| BsgI | GTGCAG | 6 cut(s) | 1149, 2784, 3750, 5194, 6633, 6945 |
| Bsh1236I | CGCG | 4 cut(s) | 212, 228, 2031, 6684 |
| Bsh1285I | CGRYCG | 2 cut(s) | 226, 274 |
| BshNI | GGYRCC | 6 cut(s) | 362, 1044, 3336, 5227, 5322, 6157 |
| BsiEI | CGRYCG | 2 cut(s) | 226, 274 |
| BsiHKAI | GWGCWC | 9 cut(s) | 2479, 3076, 3354, 4939, 5208, 5527, 5862, 6957, 7603 |
| BsiHKCI | CYCGRG | 2 cut(s) | 56, 5637 |
| BsiSI | CCGG | 4 cut(s) | 380, 6608, 7050, 7617 |
| BslFI | GGGAC | 1 cut(s) | 1057 |
| BsmBI | CGTCTC | 3 cut(s) | 391, 1859, 2269 |
| BsmFI | GGGAC | 1 cut(s) | 1057 |
| BsmI | GAATGC | 1 cut(s) | 4579 |
| Bso31I | GGTCTC | 2 cut(s) | 468, 7693 |
| BsoBI | CYCGRG | 2 cut(s) | 56, 5637 |
| Bsp119I | TTCGAA | 2 cut(s) | 128, 6144 |
| Bsp120I | GGGCCC | 1 cut(s) | 7506 |
| Bsp13I | TCCGGA | 1 cut(s) | 6607 |
| Bsp1407I | TGTACA | 3 cut(s) | 3957, 4726, 4824 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1320 |
| Bsp19I | CCATGG | 2 cut(s) | 4784, 6630 |
| Bsp68I | TCGCGA | 1 cut(s) | 6684 |
| BspEI | TCCGGA | 1 cut(s) | 6607 |
| BspFNI | CGCG | 4 cut(s) | 212, 228, 2031, 6684 |
| BspHI | TCATGA | 1 cut(s) | 3445 |
| BspMAI | CTGCAG | 6 cut(s) | 982, 1639, 4078, 4752, 5362, 5509 |
| BspOI | GCTAGC | 2 cut(s) | 7182, 7472 |
| BspQI | GCTCTTC | 1 cut(s) | 45 |
| BspT104I | TTCGAA | 2 cut(s) | 128, 6144 |
| BspT107I | GGYRCC | 6 cut(s) | 362, 1044, 3336, 5227, 5322, 6157 |
| BspTI | CTTAAG | 1 cut(s) | 7352 |
| BspTNI | GGTCTC | 2 cut(s) | 468, 7693 |
| BsrBI | CCGCTC | 1 cut(s) | 3517 |
| BsrDI | GCAATG | 9 cut(s) | 1848, 2039, 3044, 3240, 3866, 4191, 6431, 6867, 7510 |
| BsrGI | TGTACA | 3 cut(s) | 3957, 4726, 4824 |
| BssECI | CCNNGG | 9 cut(s) | 147, 274, 1670, 2186, 3939, 3984, 4784, 6630, 7050 |
| BssNI | GRCGYC | 3 cut(s) | 363, 937, 6104 |
| BssSI | CACGAG | 2 cut(s) | 816, 2582 |
| BssT1I | CCWWGG | 4 cut(s) | 147, 3939, 4784, 6630 |
| Bst2BI | CACGAG | 2 cut(s) | 816, 2582 |
| Bst6I | CTCTTC | 6 cut(s) | 45, 3647, 4031, 4090, 5635, 7245 |
| BstACI | GRCGYC | 3 cut(s) | 363, 937, 6104 |
| BstAFI | CTTAAG | 1 cut(s) | 7352 |
| BstAPI | GCANNNNNTGC | 7 cut(s) | 986, 1271, 4768, 5513, 6452, 6487, 6656 |
| BstAUI | TGTACA | 3 cut(s) | 3957, 4726, 4824 |
| BstBAI | YACGTR | 4 cut(s) | 1523, 5435, 6222, 7157 |
| BstBI | TTCGAA | 2 cut(s) | 128, 6144 |
| BstDSI | CCRYGG | 3 cut(s) | 274, 4784, 6630 |
| BstFNI | CGCG | 4 cut(s) | 212, 228, 2031, 6684 |
| BstH2I | RGCGCY | 4 cut(s) | 366, 4747, 5450, 7560 |
| BstMCI | CGRYCG | 2 cut(s) | 226, 274 |
| BstSFI | CTRYAG | 8 cut(s) | 978, 1635, 4074, 4451, 4748, 5358, 5505, 5874 |
| BstSNI | TACGTA | 2 cut(s) | 1523, 6222 |
| BstUI | CGCG | 4 cut(s) | 212, 228, 2031, 6684 |
| BstV2I | GAAGAC | 5 cut(s) | 2275, 2460, 3181, 3335, 4498 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1910 |
| BstZI | CGGCCG | 2 cut(s) | 223, 271 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1395, 2515, 7227 |
| BsuI | GTATCC | 2 cut(s) | 1669, 2881 |
| BtgI | CCRYGG | 3 cut(s) | 274, 4784, 6630 |
| BtgZI | GCGATG | 1 cut(s) | 2046 |
| BtrI | CACGTC | 3 cut(s) | 1071, 2105, 4977 |
| BtsI | GCAGTG | 6 cut(s) | 1137, 2595, 3285, 4114, 4300, 5206 |
| BtuMI | TCGCGA | 1 cut(s) | 6684 |
| CaiI | CAGNNNCTG | 8 cut(s) | 1136, 1271, 1976, 4270, 4895, 5237, 5882, 6452 |
| CciI | TCATGA | 1 cut(s) | 3445 |
| CpoI | CGGWCCG | 1 cut(s) | 264 |
| CspI | CGGWCCG | 1 cut(s) | 264 |
| DinI | GGCGCC | 1 cut(s) | 364 |
| DraI | TTTAAA | 3 cut(s) | 424, 465, 4858 |
| DraIII | CACNNNGTG | 4 cut(s) | 1184, 1862, 5390, 7188 |
| DriI | GACNNNNNGTC | 1 cut(s) | 6090 |
| EaeI | YGGCCR | 8 cut(s) | 100, 223, 271, 1818, 2899, 4424, 6339, 7203 |
| EagI | CGGCCG | 2 cut(s) | 223, 271 |
| Eam1104I | CTCTTC | 6 cut(s) | 45, 3647, 4031, 4090, 5635, 7245 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 6090 |
| EarI | CTCTTC | 6 cut(s) | 45, 3647, 4031, 4090, 5635, 7245 |
| EciI | GGCGGA | 3 cut(s) | 196, 628, 2900 |
| Ecl136II | GAGCTC | 1 cut(s) | 5525 |
| EclXI | CGGCCG | 2 cut(s) | 223, 271 |
| Eco105I | TACGTA | 2 cut(s) | 1523, 6222 |
| Eco130I | CCWWGG | 4 cut(s) | 147, 3939, 4784, 6630 |
| Eco147I | AGGCCT | 1 cut(s) | 2655 |
| Eco24I | GRGCYC | 4 cut(s) | 57, 1014, 5527, 7510 |
| Eco31I | GGTCTC | 2 cut(s) | 468, 7693 |
| Eco32I | GATATC | 2 cut(s) | 2922, 2954 |
| Eco47I | GGWCC | 8 cut(s) | 151, 264, 1667, 3272, 3560, 4163, 5684, 6560 |
| Eco47III | AGCGCT | 1 cut(s) | 7558 |
| Eco52I | CGGCCG | 2 cut(s) | 223, 271 |
| Eco53kI | GAGCTC | 1 cut(s) | 5525 |
| Eco81I | CCTNAGG | 3 cut(s) | 1395, 2515, 7227 |
| Eco88I | CYCGRG | 2 cut(s) | 56, 5637 |
| EcoICRI | GAGCTC | 1 cut(s) | 5525 |
| EcoO109I | RGGNCCY | 4 cut(s) | 3272, 4775, 5684, 7506 |
| EcoRI | GAATTC | 4 cut(s) | 114, 2332, 2729, 6064 |
| EcoRV | GATATC | 2 cut(s) | 2922, 2954 |
| EcoT14I | CCWWGG | 4 cut(s) | 147, 3939, 4784, 6630 |
| EcoT22I | ATGCAT | 5 cut(s) | 1251, 1354, 5427, 6492, 7492 |
| EcoT38I | GRGCYC | 4 cut(s) | 57, 1014, 5527, 7510 |
| EgeI | GGCGCC | 1 cut(s) | 364 |
| EheI | GGCGCC | 1 cut(s) | 364 |
| ErhI | CCWWGG | 4 cut(s) | 147, 3939, 4784, 6630 |
| Esp3I | CGTCTC | 3 cut(s) | 391, 1859, 2269 |
| FaqI | GGGAC | 1 cut(s) | 1057 |
| FauI | CCCGC | 1 cut(s) | 3654 |
| FauNDI | CATATG | 2 cut(s) | 5698, 7087 |
| FbaI | TGATCA | 3 cut(s) | 2752, 5785, 6970 |
| FblI | GTMKAC | 3 cut(s) | 2116, 6018, 6390 |
| FriOI | GRGCYC | 4 cut(s) | 57, 1014, 5527, 7510 |
| GsaI | CCCAGC | 2 cut(s) | 3631, 7629 |
| GsuI | CTGGAG | 9 cut(s) | 1434, 2520, 2892, 3810, 3897, 4191, 4868, 5237, 5331 |
| HaeII | RGCGCY | 4 cut(s) | 366, 4747, 5450, 7560 |
| HapII | CCGG | 4 cut(s) | 380, 6608, 7050, 7617 |
| Hin1I | GRCGYC | 3 cut(s) | 363, 937, 6104 |
| HincII | GTYRAC | 5 cut(s) | 2117, 3538, 4485, 5532, 6901 |
| HindII | GTYRAC | 5 cut(s) | 2117, 3538, 4485, 5532, 6901 |
| HindIII | AAGCTT | 8 cut(s) | 606, 918, 3450, 4518, 4646, 4734, 5817, 6470 |
| HpaII | CCGG | 4 cut(s) | 380, 6608, 7050, 7617 |
| Hpy99I | CGWCG | 7 cut(s) | 163, 233, 272, 371, 1926, 2106, 3788 |
| Hsp92I | GRCGYC | 3 cut(s) | 363, 937, 6104 |
| KasI | GGCGCC | 1 cut(s) | 362 |
| Kpn2I | TCCGGA | 1 cut(s) | 6607 |
| KpnI | GGTACC | 2 cut(s) | 5231, 5326 |
| Ksp22I | TGATCA | 3 cut(s) | 2752, 5785, 6970 |
| LguI | GCTCTTC | 1 cut(s) | 45 |
| MbiI | CCGCTC | 1 cut(s) | 3517 |
| MfeI | CAATTG | 7 cut(s) | 1026, 1992, 2010, 2613, 3240, 5961, 7473 |
| MlsI | TGGCCA | 2 cut(s) | 2901, 6341 |
| MluNI | TGGCCA | 2 cut(s) | 2901, 6341 |
| Mly113I | GGCGCC | 1 cut(s) | 363 |
| MmeI | TCCRAC | 8 cut(s) | 739, 1561, 2311, 3288, 3385, 3538, 5737, 5935 |
| Mox20I | TGGCCA | 2 cut(s) | 2901, 6341 |
| Mph1103I | ATGCAT | 5 cut(s) | 1251, 1354, 5427, 6492, 7492 |
| MroI | TCCGGA | 1 cut(s) | 6607 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1609, 6315, 7374 |
| MscI | TGGCCA | 2 cut(s) | 2901, 6341 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1059, 2693, 2760, 4062, 4272, 5940, 7520 |
| Msp20I | TGGCCA | 2 cut(s) | 2901, 6341 |
| MspCI | CTTAAG | 1 cut(s) | 7352 |
| MspI | CCGG | 4 cut(s) | 380, 6608, 7050, 7617 |
| MunI | CAATTG | 7 cut(s) | 1026, 1992, 2010, 2613, 3240, 5961, 7473 |
| Mva1269I | GAATGC | 1 cut(s) | 4579 |
| MvnI | CGCG | 4 cut(s) | 212, 228, 2031, 6684 |
| NarI | GGCGCC | 1 cut(s) | 363 |
| NciI | CCSGG | 1 cut(s) | 7051 |
| NcoI | CCATGG | 2 cut(s) | 4784, 6630 |
| NdeI | CATATG | 2 cut(s) | 5698, 7087 |
| NheI | GCTAGC | 2 cut(s) | 7178, 7468 |
| NmeAIII | GCCGAG | 1 cut(s) | 433 |
| NruI | TCGCGA | 1 cut(s) | 6684 |
| NsiI | ATGCAT | 5 cut(s) | 1251, 1354, 5427, 6492, 7492 |
| NspV | TTCGAA | 2 cut(s) | 128, 6144 |
| OliI | CACNNNNGTG | 2 cut(s) | 2693, 7520 |
| PaeI | GCATGC | 3 cut(s) | 1715, 5429, 7490 |
| PagI | TCATGA | 1 cut(s) | 3445 |
| PceI | AGGCCT | 1 cut(s) | 2655 |
| PciI | ACATGT | 4 cut(s) | 1555, 4438, 5266, 5716 |
| PciSI | GCTCTTC | 1 cut(s) | 45 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 54, 228, 3393, 3676 |
| PctI | GAATGC | 1 cut(s) | 4579 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1609, 6315, 7374 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 866, 1184, 1367, 6491, 6767 |
| PfoI | TCCNGGA | 4 cut(s) | 835, 1306, 2869, 3994 |
| PluTI | GGCGCC | 1 cut(s) | 366 |
| Ppu21I | YACGTR | 4 cut(s) | 1523, 5435, 6222, 7157 |
| PpuMI | RGGWCCY | 2 cut(s) | 3272, 5684 |
| PscI | ACATGT | 4 cut(s) | 1555, 4438, 5266, 5716 |
| PsiI | TTATAA | 2 cut(s) | 5496, 7563 |
| Psp124BI | GAGCTC | 1 cut(s) | 5527 |
| Psp5II | RGGWCCY | 2 cut(s) | 3272, 5684 |
| PspFI | CCCAGC | 2 cut(s) | 3627, 7625 |
| PspOMI | GGGCCC | 1 cut(s) | 7506 |
| PspPPI | RGGWCCY | 2 cut(s) | 3272, 5684 |
| PstI | CTGCAG | 6 cut(s) | 982, 1639, 4078, 4752, 5362, 5509 |
| PstNI | CAGNNNCTG | 8 cut(s) | 1136, 1271, 1976, 4270, 4895, 5237, 5882, 6452 |
| PvuII | CAGCTG | 9 cut(s) | 1271, 1490, 2558, 4169, 4181, 5234, 5510, 6368, 6452 |
| RruI | TCGCGA | 1 cut(s) | 6684 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1059, 2693, 2760, 4062, 4272, 5940, 7520 |
| Rsr2I | CGGWCCG | 1 cut(s) | 264 |
| RsrII | CGGWCCG | 1 cut(s) | 264 |
| SacI | GAGCTC | 1 cut(s) | 5527 |
| SalI | GTCGAC | 1 cut(s) | 2115 |
| SapI | GCTCTTC | 1 cut(s) | 45 |
| SbfI | CCTGCAGG | 1 cut(s) | 4752 |
| ScaI | AGTACT | 1 cut(s) | 7374 |
| SdaI | CCTGCAGG | 1 cut(s) | 4752 |
| SfcI | CTRYAG | 8 cut(s) | 978, 1635, 4074, 4451, 4748, 5358, 5505, 5874 |
| SfoI | GGCGCC | 1 cut(s) | 364 |
| SfuI | TTCGAA | 2 cut(s) | 128, 6144 |
| SinI | GGWCC | 8 cut(s) | 151, 264, 1667, 3272, 3560, 4163, 5684, 6560 |
| SmiI | ATTTAAAT | 1 cut(s) | 4858 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1059, 2693, 2760, 4062, 4272, 5940, 7520 |
| SnaBI | TACGTA | 2 cut(s) | 1523, 6222 |
| SpeI | ACTAGT | 2 cut(s) | 5188, 7211 |
| SphI | GCATGC | 3 cut(s) | 1715, 5429, 7490 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 4752 |
| SseBI | AGGCCT | 1 cut(s) | 2655 |
| SspDI | GGCGCC | 1 cut(s) | 362 |
| SspI | AATATT | 1 cut(s) | 4530 |
| SstI | GAGCTC | 1 cut(s) | 5527 |
| StuI | AGGCCT | 1 cut(s) | 2655 |
| StyI | CCWWGG | 4 cut(s) | 147, 3939, 4784, 6630 |
| SwaI | ATTTAAAT | 1 cut(s) | 4858 |
| TaqII | GACCGA | 2 cut(s) | 281, 344 |
| TatI | WGTACW | 5 cut(s) | 2428, 3957, 4726, 4824, 7372 |
| TauI | GCSGC | 7 cut(s) | 212, 228, 1628, 3737, 3908, 7208, 7616 |
| TspGWI | ACGGA | 5 cut(s) | 157, 409, 1706, 3199, 4379 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 866, 1184, 1367, 6491, 6767 |
| Vha464I | CTTAAG | 1 cut(s) | 7352 |
| VneI | GTGCAC | 3 cut(s) | 5204, 5858, 6953 |
| VpaK11BI | GGWCC | 8 cut(s) | 151, 264, 1667, 3272, 3560, 4163, 5684, 6560 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 145, 783, 1202, 4215, 6357 |
| XmiI | GTMKAC | 3 cut(s) | 2116, 6018, 6390 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1609, 6315, 7374 |
| ZrmI | AGTACT | 1 cut(s) | 7374 |
| Zsp2I | ATGCAT | 5 cut(s) | 1251, 1354, 5427, 6492, 7492 |