Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010166

Physical Location & Seq

Genomic Coordinates Reverse (-)

3501853 .. 3515730

Gene Structure 13878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1042600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7746 bp

ATGGACAGCCCCAAGATTAACTCCTCCAATTCTTCTTCCCGTCCTACCCCTGCCGTCGTCGAGGAGCCGGAGTACCTCGCCCGCTACTTGGTCATCAAGCACTCGTGGCGCGGCCGCTACAAGCGAATTCTCTGCCTTTCGAATGTCGCCATAACCACCTTGGATCCCGGGACGCTCTCCGTCACCAATTCTTACGACGTCGCCACCGATTTCGACTCCGCCGCGCCGATCCTCAGCCGCGACGAGAACTCCAATGAGTTCAATTTGAGTGTTCGGACTGATGGGAAGGGCAAATTCAAGGGCATTAAGTTCTCGTCGAGGTACAGAGCGAGTATACTGACCGAGTTGCACAGAATTAGGGGGAATCGGTTGGGCGCCGTCGCCGAGTTTCCGGTGCTTCATCTCCGGCGCCGGAATGCCGAGTGGGTCCCACTTAAATTAAAAATTACTTATGTTGGGGTTGAACTTATTGATTTAAAAAGTGGAGACCTTCGCTGGTGCTTGGATTTCAGAGATTTTGACTCGCCTGCCATTGTGTCCCTTACTGATGCTTATGGGAAGAAAGGCGGTGAACATGGAAGTTTTGTTCTTTGTCCCTTGTATGGAAGAAAATCTAAAGCTTTTCAAGCTGCTTCTGGAACCACAAGTTCAGCCATCATTGCAAGTTTGACCAAAACAGCAAAATCCATGGTCGGGGTGTCACTAACTGTGGACACTTCTCAATCTCTCACTATACCAGAGTATATAAAACGAAGGGCAAAAGAGGCAGTTGGAGCAGAAGAAACTCCATGTGGAGGTTGGTCTGTGACAAGGTTGCGCTCTGCTGCTCGTGGAACTTTAAATGTTCCAGGGTTGAGTTTGAGTGTTGGCCCAAAAGGTGGACTTGGGGAGAATGGTGATGCTGTATCTCGTCAACTGATTCTTACAAAAGTTTCACTTGTTGAAAGACGCCCAGAGAACTATGAAGCTGTTATTGTTCGACCTTTATCTGCAGTAAATGCACTTGTTCGATTTGCTGAGGAGCCCCAAATGTTTGCAATTGAGTTCAATGATGGGTGCCCCATCCATGTTTATGCAAGCACGTCTCGTGATAGCCTACTTGTAGCAGTTCGGGATCAGTTGCAAACAGAAGGCCAATGTGCAGTGACTGTGTTACCAAGATTGACAATGCCTGGCCATCGCATTGATCCACCTTGCGGGAGAGTCCAATTACAATTTGGACTCCAGCGGCCTGTTGCAGATATGGAGAGTGCATCTATGCATTTGAAACACTTAGCAGCAGCTGCCAAAGATGCAGTTTCTGAAGGTGGTTCTATTCCTGGATCAAGAGCTAAGCTATGGCGTAGAATAAGAGAGTTCAATGCATGTATACCATATAGTGGAGTTCCTCCTAACATAGAAGTACCTGAGGTGACTTTGATGGCTTTAATAACAATGCTTCCATCTACGCCAAATCTTCCTCCAGAGTCCCCTCCCTTACCTCCCCCTTCACCTAAAGCAGCTGCAACGGTGATAGGCTTTATTGCATGCTTACGTAGATTACTAGCTTCACGAACTGCATCTTCACATGTCATGTCTTTTCCTGCTGCTGTTGGAAGAATAATCGGCTTACTCAGAAATGGTTCAGAGGGTGTAGCTGCTGAAGCAGCAGGCCTCGTCGCAGTACTTATTGGTGGTGGTCCTGGGGATACAAATATACTAACAGATTCTAAAGGAGAGCAGCATGCCACAATCATGCACACAAAGTCAGTGTTGTTTGCTAATCATGGTTATGCTATTATACTCTCCAACAGACTTAAGCCTATGTCTGTATCACCATTATTATCAATGGCTGTTGTGGAGGTTCTTGAGGCAATGATATGTGAACCACATGGTGAGACAACACAATACACAGTGTTTGTTGAGCTGTTACGCCAAGTAGCTGGTTTAAAGCGTCGTTTGTTTGCATTGTTTGGACATCCTGCTGAAAGCGTTAGGGAAACAGTGGCTGTGATTATGCGTACAATTGCGGAAGAAGATGCAATTGCAGCAGAGTCGATGCGTGATGCTGCATTGCGCGATGGTGCTTTACTGAGGCATTTAGTGCACGCGTTCTTCCTTCCTCCTGGTGAGCGTTGTGAAGTTAGTCGACAGCTTGTTGCTCTTTGGGCAGATTCTTATCAACCAGCTCTGGATCTATTGTCTAGAGTTCTGCCTCCTGGGCTTGTTGCTTATTTGCACACACGTTCTGATGGAACTCAACTGGAAGATTCTAATCAAGAAGGATCCTTGACCAGCAGAAGGCAGAGACGCTTACTCCAACAGCGGAAAGGTCGTGCAGGGAGAGGATCAACATCTCAAGAACATTCCCTACCTGGTGATCCCATGACACAGACAGGTGGTGGTGCTTCTAAGGCTGATAACTATCAAAGATCTGCACTGGATTCGAGTTCTGGACAGGCTTCTACTCTCCAATCTTCTATTGCTCAAAGTCAAACAGGTGAAAATTTGACCACCGAAGTCTCTACAGGTGGTCCGCAAAACAATCATTCAACATTTGTCTCTTCAACTGATGTTCAGTCAACAAGCATTCATGAGGCAGTGGAAGCAAATACTTCAATCTCAACTGATTCTGATTCCAACACTACTGGTTTTCAGAACACAGGCCTCCCTGCTCCTGCTCAGGTTGTTGTCGAAAACACTCCAGTGGGATCTGGTAGGCTACTTTGTAATTGGCCTGAATTCTGGCGAGCATTTAGCCTTGATCATAATCGTGCAGATTTGATCTGGAATGAGCGTACCCGGCAAGAGTTGAGGGAGACTTTGCAGGCCGAGGTTCATAAGTTAGATGTTGAGAAGGAGCGTACGGAAGATATTGCTCCAGGAGGTGCTATGGTAGAGACTGCGACTGGTCAAGATAGTGTGCCGCAGATATCTTGGAACTACTCTGAGTTCTCGGTTAGATATCCAAGCTTGTCCAAAGAAGTCTGTGTGGGTCAGTATTATCTACGTTTACTGCTTGAGAGTGGCAGTGTTGGCAGGGCACAAGATTTTCCATTGCGTGATCCCGTTGTGTTCTTTAGAGCACTCTACCATAGGTTCTTATGTGATGCAGACATAGGGCTTACAGTGGATGGTGCTGTTCCTGATGAGATGGGCGCATCTGATGATTGGTGTGACATGGGAAGACTAGATGGTTTTGGAGGTGGAGGAGGATATTCAGTGAGAGAGCTCTGTGCAAGAGCAATGGCAATAGTGTATGAACAGCATTACAAGACAGTAGGTCCCTTTGAGGGCACTGCTCACATCACAGTCCTTTTGGATAGGACAGATGACAGGGCTTTAAGGCACCGCCTTCTATTGCTTTTGAAGGCGTTAATGAAGGTTTTGTCAAATGTGGAGGCGTGTGTTTTGGTGGGAGGATGTGTGTTAGCTGTTGATATGCTGACGGTGGCTCATGAGGCTTCTGAAAGGACAGCTATTCCTTTGCAATCTAATTTGATTGCTGCGACTGCTTTCATGGAACCTCTCAAGGAATGGATGTTTATTGACAAGGAAGGAGCACAGGTTGGACCTGTTGAAAAGGATGCCATTAGGAGATTTTGGTCAAAGAAGGATATTAATTGGACAACGAGATGCTGGGCTTCTGGGATGTTGGACTGGAAGAGATTGCGGGATATTCGTGAACTTCGTTGGGCTTTAGCTGTTCGAGTCCCTGTTCTCACACCAACTCAGATTGGTGAAGCAGCATTGTCCATATTACATAGCATGGTGTCTGCACATTCAGATTTAGATGATGCTGGAGAGATAGTTACCCCGACTCCTAGAGTAAAAGGGATCTTGTCAAGTCCACGTTGCCTTCCACATATTGCTCAGGCTATGCTTTCTGGAGAGCCAAGTATTGTAGAGGGTGCCGCTTCTTTACTTAAGGCTGTTGTAACTAGAAATCCCAAGGCCATGATTCGACTATACAACACAGGGGCATTTTATTTTGCCTTGGCATATCCTGGATCTAATCTCCTTTCAATCGCCCAACTCTTCTCAATGACTCATGTTCACCAAGCATTTCATGGTGGTGAAGAAGCTGCAGTTTCCTCTTCCTTGCCTCTGGCGAAACGCAGTGTATTGGGTGGGCTTCTTCCTGCATCGTTGCTGTATGTATTGGAACGTAGTGGTCCAGCTGCATTTGCAGCTGCAATGGTATCTGATTCTGATACTCCAGAGATTATATGGACTCACAAGATGCGAGCGGAAAATCTGATCCGTCAGGTTTTGCAGCATCTTGGTGATTTTCCCCAGAAATTGTCTCAGCACTGCCATTCTTTGTATGAATATGCTCCAATGCCACCAGTGACATACCCTGAGTTAAGAGATGAAATGTGGTGTCACCGTTATTACCTCCGGAACTTATGTGACGAGATTCGTTTTCCAAATTGGCCCATTGTTGAACATGTTGAGTTCCTACAATCATTATTGGTAATGTGGCGTGAGGAGTTGACAAGACGGCCAATGGATCTTTCTGAAGAAGAAGCTTGCAAAATATTAGAGATTTCCTTGGAGGATGTATCAAATGATGATGCCGACACGACGCATTCTGTTGAGATGGGTGAGGAGATATCTAGCATATCCAAGCAGATTGAGAACATTGATGAAGAAAAGCTTAAACGACAATATAGGAAACTTGCCATGAGATACCATCCAGACAAAAATCCTGAAGGAAGGGAGAAGTTTCTTGCTGTACAGAAAGCTTATGAGCGCCTGCAGGCCACTATGCAAGGCTTGCAAGGCCCTAAGCCTTGGCGACTGTTGCTTTTATTGAAAGGACAGTGTATCTTGTACAGACGCTATGGAGTCATTCTGGAGCCGTTTAAATATGCTGGTTATCCAATGTTGCTCAATGCAGTTACTGTGGACAAGGATGATAACAATTTTCTTTCCTCAGATAGAGCACCTCTCCTTGTTGCGGCATCAGAGCTTATATGGCTGACGTGTGCATCTTCTGCATTGAATGGAGAAGAGCTTGTGAGGGATGGTGGCATACAACTTCTTGCGAATCTTCTTTCCCGTTGCATGTGTGTAGTTCAGCCAAGCACTGCTGCAAGTGAACCATCTGCCATAATTGTTACAAATGTGATGCGAACCTTTTGTGTTTTGAGTAAATTTGAGAGTGCCTGGGCTGAGATCCTTGAATATTCTGGACTAATTGATGACATTGTGCATTGCACTGAACTTGAGCTTGTACCTTCTGCTGTCGATGCTGCTCTCCAGACTATTGCACATGTTTCTGTGTCCACTGAATTGCAGGATGCCTTGCTGAAGGCTGGTGTCTTATGGTACCTTTTGCCCGTGCTTCTTCAGTATGACTCCACTGCAGAGGAATCTGATACAACAGAATCACACGGAGTTGGTGCTAGTGTACAAATTGCCAAAAATATGCATGCTGTACGTGCTTCGCAGGCACTATCTAGGCTTAGTGGTTTGTGTAGTGATGGGAGTTCAACACCTTATAATCAGACTGCGGCTGATGCCCTCAGAGCTTTGTTGACACCTAAGCTTGCCAGTATGTTAAAAGATCAAGCACCGAAAGACCTACTATCTAAACTAAACAATAACTTGGAGTCTCCAGAGATTATCTGGAACTCCTCAACCCGAGCAGAACTACTGAAATTTGTGGATCAGCAACGTGCTAGTCAGGGTCCTGATGGTTCATATGATATGAAAGATTCACATCTGTTTGGGTATAAGGCACTATCAAAAGAACTCTATGTTGGCAATGTTTACTTGAGGGTCTATAACGATCAACCAGATTTTGAGATCAGTGAACCAGAGGCTTTCTGTGTTGCATTAGTTGAATTTATAGCATATCTTGTGCATAATCAATGTGCTACCGATTCTGAAATTAAGGATGTACCAAATCAGAATGGCTCATCCCTCAAGACTTCTGAGGATTCTAATGATACGACTATTGGATCAACTGACGAACAGAAGACTCCGGCTGAAGATTCTGCACTATCTAATGGACAAGTAGTAGATAAGGAAGAATCTGAGGGGGTTAAGAACCTTAAATTTGCACTGAATTCACTTAAGAATTTACTGACAAGCAGTCCAAATTTGGCGTCAATTTTTTCTACAAAAGATAAGCTATTGCCTCTTTTTGAATGCTTTTCTGTGCCTGTTGCATCAGAAAGCAACATTCCTCAACGTTGCCTGAGCGTGTTATCACTCTTGACTACATATGCTCCCTGCTTGGAGGCTATGGTTGCAGATGGATCTAGCCTTCTTCTTTTATTACAGATGCTTCACTCAGCCCCAGCTTGTCGTGAAGGGGTTCTTCATGTTCTTTATGCTCTGGCCAGCACACCTGAACTTGCTTGGGCAGCTGCCAAGCATGGGGGAGTTGTCTACATCCTTGAACTTCTGTTGCCTTTGCAGGAAGAAATTTCCTTACAACAAAGAGCAGCAGCAGCCTCTTTGTTGGGGAAGCTTGTTGGCCAGCCAATGCATGGGCCTAGAGTTGCTATAACGTTAGCAAGGTTCCTTCCAGATGGCTTGATTTCAGTTATTAGGGATGGGCCTGGCGAGGCCGTTGTAGTTGCCCTTGAACAGACTACTGAGACCCCAGAACTCGTATGGACACCAGCAATGGCTACTTCATTGTCTGCACAGATTGCAACCATGGCATCAGATCTGTACCGCGAACAGATGAAAGGTCGCGTGGTTGATTGGGATGTACCTGAGCAGGCATCTAGGCAGCAAGAAATGAGAGATGAGCCACAGGTTGGCGGAATCTATGTTAGGTTATTCCTAAAAGATCCCAAGTTTCCTCTTAGAAATCCCAAGAGATTCTTGGAAGGACTGCTAGATCAGTATTTGACATCTATTGCTGCCACACATTACGATACACAAGCTGTTGACCCTGAACTTCCTTTGCTTCTGTCTGCTGCGTTGGTTTCTTTATTACGAGTGCACCCTGCACTTGCAGATCATGTTGGATATCTTGGATATGTGCCCAAGCTCGTGGCTGCTGTGGCTTATGAAGGAAGACGAGAAACAATGGCATCAGAGGAGGTAAACAATGGCAATTATGTGGACAAAACAGATGAATCTGATGATGGATCCACACAGCCCACTCAAACTCCCCAAGAACGCGTGCGCCTCAGTTGTTTACGCGTTCTACATCAACTGGCAGCTAGCACCATATGTGCTGAAGCTATGGCAGCAACTAGTGTAGGAACTCCTCAGGTTGTTCCTCTTCTAATGAAGGCAATTGGATGGCAAGGTGGAAGCATACTAGCTCTTGAGACACTAAAGCGTGTTGTTGTTGCTGGAAACCGAGCTAGGGATGCACTTGTTGCACAAGGACTTAAGGTTGGTCTTGTTGATGTACTTCTTGGCCTTCTTGATTGGAGAGCTGGAGGAAGGAATGGCCTGTGCTCTCAGATGAAATGGAATGAATCCGAAGCATCTATTGGCAGGGTGCTGGCAATTGAGGTTCTGCATGCGTTTGCAACAGAGGGAGCCCATTGTACTAAAGTGCGCGACTTGTTAAATTCCTCAGATGTTTGGAGTGCCTATAAGGATCAGAAACATGATCTTTTCCTCCCTTCAAGTGCTCAATCCGCTGCCGCCGGAGTTGCTGGACTAATTGAGAGTTCATCATCGAGACTCGCTTATGCCCTTCCAGCTCCCCCACCACAACCCGCTCCATCGCGACCTCCTGCTTCAACTTCATCCGACTTAAATGGAAAACATGACCACCTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006897 GO:0006898 GO:0006955 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032879 GO:0032940 GO:0035577 GO:0036230 GO:0042119 GO:0042582 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043299 GO:0043312 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0060341 GO:0060627 GO:0065007 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099503 GO:1902954 GO:1903649 GO:2000641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 DnaJ

Protein Analysis

2582

Amino Acids

281.71

Weight (kDa)

5.81

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RME-8_N	PF19432	28 - 252	5.5e-23	DNAJ protein RME-8 N-terminal
RME-8_N	PF19432	300 - 748	1.3e-53	DNAJ protein RME-8 N-terminal
RME-8_N	PF19432	903 - 1002	2.4e-24	DNAJ protein RME-8 N-terminal
GYF_2	PF14237	1175 - 1223	9.3e-13	GYF domain 2
DnaJ	PF00226	1541 - 1581	1.7e-10	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26890
fragaria_vesca	FvH4_1g04290 FvH4_1g04290 FvH4_1g04983
malus_domestica	MD02G1042600.v1.1 MD15G1181200.v1.1
prunus_persica	Prupe.7G234400_v2.0.a1 Prupe.7G234400_v2.0.a1
pyrus_communis	pycom02g03540 pycom15g16350
rosa_chinensis	RchiOBHm_Chr2g0089861
rosa_laevigata	RLG00000016062
rosa_multiflora	Rmu_co8299847.1_g000001 Rmu_sc0002384.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151530
rosa_rugosa	Rorug02G0003700
rosa_samantha	Rh2AG049000 Rh2BG047900 Rh2CG050000 Rh2DG049100
rosa_wichuraiana	Rw2G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	5487
AatII	GACGTC	1 cut(s)	201
Acc65I	GGTACC	1 cut(s)	5313
AccB1I	GGYRCC	6 cut(s)	374, 408, 1056, 3327, 3890, 5313
AccB7I	CCANNNNNTGG	4 cut(s)	878, 1379, 6482, 6758
AccBSI	CCGCTC	2 cut(s)	4229, 7682
AccI	GTMKAC	4 cut(s)	334, 1369, 2128, 6381
AccIII	TCCGGA	1 cut(s)	4380
AclI	AACGTT	2 cut(s)	6181, 6503
AcoI	YGGCCR	5 cut(s)	112, 1174, 4484, 6330, 6469
AcuI	CTGAAG	8 cut(s)	1323, 1662, 4521, 4713, 5315, 5318, 5997, 7206
AcyI	GRCGYC	5 cut(s)	198, 375, 409, 949, 6095
AdeI	CACNNNGTG	1 cut(s)	1874
AflII	CTTAAG	4 cut(s)	1796, 3905, 6062, 7343
AflIII	ACRYGT	8 cut(s)	1567, 2088, 2222, 4429, 4967, 5257, 7126, 7147
AhdI	GACNNNNNGTC	2 cut(s)	3261, 6081
AhlI	ACTAGT	1 cut(s)	7202
AjiI	CACGTC	2 cut(s)	1083, 4968
AjuI	GAANNNNNNNTTGG	6 cut(s)	4480, 4512, 5730, 5762, 7431, 7463
AleI	CACNNNNGTG	1 cut(s)	2684
AloI	GAACNNNNNNTCC	2 cut(s)	570, 602
Alw21I	GWGCWC	8 cut(s)	2088, 3067, 3213, 3544, 4930, 6948, 7415, 7594
Alw44I	GTGCAC	2 cut(s)	2084, 6944
AlwNI	CAGNNNCTG	5 cut(s)	1148, 1283, 1301, 1988, 4886
Ama87I	CYCGRG	2 cut(s)	167, 5628
Aor13HI	TCCGGA	1 cut(s)	4380
ApaLI	GTGCAC	2 cut(s)	2084, 6944
ArsI	GACNNNNNNTTYG	2 cut(s)	6080, 6112
AseI	ATTAAT	1 cut(s)	3600
Asp700I	GAANNNNTTC	2 cut(s)	1621, 6306
Asp718I	GGTACC	1 cut(s)	5313
AsuC2I	CCSGG	3 cut(s)	168, 169, 2782
AsuII	TTCGAA	1 cut(s)	140
AsuNHI	GCTAGC	1 cut(s)	7169
AvaI	CYCGRG	2 cut(s)	167, 5628
AvaII	GGWCC	7 cut(s)	427, 1679, 2513, 3263, 3551, 4154, 5675
AxyI	CCTNAGG	2 cut(s)	1407, 7218
BaeGI	GKGCMC	6 cut(s)	1061, 2088, 3025, 3278, 6948, 6990
BalI	TGGCCA	3 cut(s)	1176, 6332, 6471
BamHI	GGATCC	3 cut(s)	163, 2264, 7094
BanI	GGYRCC	6 cut(s)	374, 408, 1056, 3327, 3890, 5313
BanII	GRGCYC	3 cut(s)	1026, 3213, 7501
BauI	CACGAG	4 cut(s)	103, 828, 1086, 6995
BbsI	GAAGAC	3 cut(s)	3172, 5972, 7027
Bbv12I	GWGCWC	8 cut(s)	2088, 3067, 3213, 3544, 4930, 6948, 7415, 7594
BbvCI	CCTCAGC	2 cut(s)	233, 1017
BceAI	ACGGC	5 cut(s)	38, 362, 4499, 4828, 6548
BcgI	CGANNNNNNTGC	6 cut(s)	114, 148, 2016, 2050, 2406, 2440
BciVI	GTATCC	1 cut(s)	1681
BclI	TGATCA	1 cut(s)	2743
BcnI	CCSGG	3 cut(s)	168, 169, 2782
BcuI	ACTAGT	1 cut(s)	7202
BfmI	CTRYAG	5 cut(s)	990, 2505, 4065, 4739, 5349
BfoI	RGCGCY	3 cut(s)	378, 412, 4738
BfrI	CTTAAG	4 cut(s)	1796, 3905, 6062, 7343
BfuI	GTATCC	1 cut(s)	1681
BglI	GCCNNNNNGGC	1 cut(s)	2200
BglII	AGATCT	2 cut(s)	2411, 6664
BlpI	GCTNAGC	1 cut(s)	1332
BmcAI	AGTACT	1 cut(s)	1665
Bme18I	GGWCC	7 cut(s)	427, 1679, 2513, 3263, 3551, 4154, 5675
BmeRI	GACNNNNNGTC	2 cut(s)	3261, 6081
BmeT110I	CYCGRG	2 cut(s)	167, 5628
BmgBI	CACGTC	2 cut(s)	1083, 4968
BmtI	GCTAGC	1 cut(s)	7173
BpiI	GAAGAC	3 cut(s)	3172, 5972, 7027
BplI	GAGNNNNNCTC	2 cut(s)	4917, 4949
Bpu10I	CCTNAGC	8 cut(s)	233, 1017, 2661, 3852, 4770, 5529, 6188, 6714
Bpu1102I	GCTNAGC	1 cut(s)	1332
Bpu14I	TTCGAA	1 cut(s)	140
BpuEI	CTTGAG	8 cut(s)	1868, 2322, 3020, 3494, 5231, 5782, 5897, 7298
BpuMI	CCSGG	3 cut(s)	168, 169, 2782
BsaAI	YACGTR	2 cut(s)	1535, 5426
BsaBI	GATNNNNATC	6 cut(s)	2157, 2253, 2332, 2403, 2748, 5706
BsaHI	GRCGYC	5 cut(s)	198, 375, 409, 949, 6095
BsaI	GGTCTC	2 cut(s)	480, 6587
BsaWI	WCCGGW	2 cut(s)	391, 4380
Bse1I	ACTGG	9 cut(s)	2247, 2424, 2632, 2684, 2893, 3644, 4328, 5538, 7167
Bse21I	CCTNAGG	2 cut(s)	1407, 7218
Bse3DI	GCAATG	9 cut(s)	657, 1860, 2051, 3035, 3231, 4182, 5197, 5758, 6627
Bse8I	GATNNNNATC	6 cut(s)	2157, 2253, 2332, 2403, 2748, 5706
BseAI	TCCGGA	1 cut(s)	4380
BseJI	GATNNNNATC	6 cut(s)	2157, 2253, 2332, 2403, 2748, 5706
BseMI	GCAATG	9 cut(s)	657, 1860, 2051, 3035, 3231, 4182, 5197, 5758, 6627
BseNI	ACTGG	9 cut(s)	2247, 2424, 2632, 2684, 2893, 3644, 4328, 5538, 7167
BseRI	GAGGAG	9 cut(s)	13, 77, 1034, 3204, 4484, 4604, 5611, 7058, 7206
BseSI	GKGCMC	6 cut(s)	1061, 2088, 3025, 3278, 6948, 6990
BseX3I	CGGCCG	1 cut(s)	112
BseYI	CCCAGC	2 cut(s)	3618, 6289
BsgI	GTGCAG	8 cut(s)	1161, 2337, 2400, 2775, 3741, 5970, 6624, 6936
Bsh1285I	CGRYCG	1 cut(s)	115
BshNI	GGYRCC	6 cut(s)	374, 408, 1056, 3327, 3890, 5313
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	8 cut(s)	2088, 3067, 3213, 3544, 4930, 6948, 7415, 7594
BsiHKCI	CYCGRG	2 cut(s)	167, 5628
BsiSI	CCGG	9 cut(s)	68, 168, 392, 406, 412, 2782, 4381, 5972, 7608
BsiWI	CGTACG	1 cut(s)	2843
BslFI	GGGAC	7 cut(s)	184, 413, 523, 579, 1453, 3249, 3677
BsmBI	CGTCTC	2 cut(s)	1089, 2281
BsmFI	GGGAC	7 cut(s)	184, 413, 523, 579, 1453, 3249, 3677
BsmI	GAATGC	4 cut(s)	421, 2568, 4570, 6143
Bso31I	GGTCTC	2 cut(s)	480, 6587
BsoBI	CYCGRG	2 cut(s)	167, 5628
Bsp119I	TTCGAA	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	4380
Bsp1407I	TGTACA	3 cut(s)	4717, 4815, 5395
Bsp1720I	GCTNAGC	1 cut(s)	1332
Bsp19I	CCATGG	2 cut(s)	687, 6654
Bsp68I	TCGCGA	1 cut(s)	7690
BspEI	TCCGGA	1 cut(s)	4380
BspHI	TCATGA	2 cut(s)	2572, 3436
BspMAI	CTGCAG	4 cut(s)	994, 4069, 4743, 5353
BspOI	GCTAGC	1 cut(s)	7173
BspQI	GCTCTTC	1 cut(s)	4989
BspT104I	TTCGAA	1 cut(s)	140
BspT107I	GGYRCC	6 cut(s)	374, 408, 1056, 3327, 3890, 5313
BspTI	CTTAAG	4 cut(s)	1796, 3905, 6062, 7343
BspTNI	GGTCTC	2 cut(s)	480, 6587
BsrBI	CCGCTC	2 cut(s)	4229, 7682
BsrDI	GCAATG	9 cut(s)	657, 1860, 2051, 3035, 3231, 4182, 5197, 5758, 6627
BsrGI	TGTACA	3 cut(s)	4717, 4815, 5395
BsrI	ACTGG	9 cut(s)	2247, 2424, 2632, 2684, 2893, 3644, 4328, 5538, 7167
BssNAI	GTATAC	2 cut(s)	335, 1370
BssNI	GRCGYC	5 cut(s)	198, 375, 409, 949, 6095
BssSI	CACGAG	4 cut(s)	103, 828, 1086, 6995
BssT1I	CCWWGG	7 cut(s)	159, 687, 3930, 3975, 4533, 4775, 6654
Bst1107I	GTATAC	2 cut(s)	335, 1370
Bst2BI	CACGAG	4 cut(s)	103, 828, 1086, 6995
Bst6I	CTCTTC	6 cut(s)	2548, 3638, 4022, 4081, 4989, 7236
BstACI	GRCGYC	5 cut(s)	198, 375, 409, 949, 6095
BstAFI	CTTAAG	4 cut(s)	1796, 3905, 6062, 7343
BstAPI	GCANNNNNTGC	7 cut(s)	998, 1283, 2083, 4759, 4979, 6647, 7331
BstAUI	TGTACA	3 cut(s)	4717, 4815, 5395
BstBAI	YACGTR	2 cut(s)	1535, 5426
BstBI	TTCGAA	1 cut(s)	140
BstDSI	CCRYGG	2 cut(s)	687, 6654
BstH2I	RGCGCY	3 cut(s)	378, 412, 4738
BstMCI	CGRYCG	1 cut(s)	115
BstNSI	RCATGY	9 cut(s)	1368, 1530, 1571, 1727, 4433, 5053, 5261, 5420, 7481
BstSFI	CTRYAG	5 cut(s)	990, 2505, 4065, 4739, 5349
BstSLI	GKGCMC	6 cut(s)	1061, 2088, 3025, 3278, 6948, 6990
BstSNI	TACGTA	1 cut(s)	1535
BstV2I	GAAGAC	3 cut(s)	3172, 5972, 7027
BstXI	CCANNNNNNTGG	2 cut(s)	1922, 6997
BstZ17I	GTATAC	2 cut(s)	335, 1370
BstZI	CGGCCG	1 cut(s)	112
Bsu36I	CCTNAGG	2 cut(s)	1407, 7218
BsuI	GTATCC	1 cut(s)	1681
BtgI	CCRYGG	2 cut(s)	687, 6654
BtgZI	GCGATG	3 cut(s)	1163, 2073, 7671
BtrI	CACGTC	2 cut(s)	1083, 4968
BtsI	GCAGTG	8 cut(s)	1149, 2586, 3016, 3276, 4105, 4291, 5070, 5346
BtuMI	TCGCGA	1 cut(s)	7690
CaiI	CAGNNNCTG	5 cut(s)	1148, 1283, 1301, 1988, 4886
CciI	TCATGA	2 cut(s)	2572, 3436
CciNI	GCGGCCGC	1 cut(s)	112
Cfr9I	CCCGGG	1 cut(s)	167
CseI	GACGC	7 cut(s)	181, 957, 1922, 2298, 4576, 4830, 6084
CsiI	ACCWGGT	1 cut(s)	2353
DinI	GGCGCC	2 cut(s)	376, 410
DraI	TTTAAA	4 cut(s)	477, 840, 1929, 4849
DraIII	CACNNNGTG	1 cut(s)	1874
DriI	GACNNNNNGTC	2 cut(s)	3261, 6081
EaeI	YGGCCR	5 cut(s)	112, 1174, 4484, 6330, 6469
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	6 cut(s)	2548, 3638, 4022, 4081, 4989, 7236
Eam1105I	GACNNNNNGTC	2 cut(s)	3261, 6081
EarI	CTCTTC	6 cut(s)	2548, 3638, 4022, 4081, 4989, 7236
EciI	GGCGGA	2 cut(s)	208, 6777
Ecl136II	GAGCTC	1 cut(s)	3211
EclXI	CGGCCG	1 cut(s)	112
Eco105I	TACGTA	1 cut(s)	1535
Eco130I	CCWWGG	7 cut(s)	159, 687, 3930, 3975, 4533, 4775, 6654
Eco147I	AGGCCT	2 cut(s)	1653, 2646
Eco24I	GRGCYC	3 cut(s)	1026, 3213, 7501
Eco31I	GGTCTC	2 cut(s)	480, 6587
Eco32I	GATATC	4 cut(s)	2913, 2945, 4596, 6974
Eco47I	GGWCC	7 cut(s)	427, 1679, 2513, 3263, 3551, 4154, 5675
Eco52I	CGGCCG	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	3211
Eco57I	CTGAAG	8 cut(s)	1323, 1662, 4521, 4713, 5315, 5318, 5997, 7206
Eco81I	CCTNAGG	2 cut(s)	1407, 7218
Eco88I	CYCGRG	2 cut(s)	167, 5628
EcoICRI	GAGCTC	1 cut(s)	3211
EcoO109I	RGGNCCY	4 cut(s)	427, 3263, 4766, 5675
EcoRI	GAATTC	3 cut(s)	126, 2720, 6055
EcoRV	GATATC	4 cut(s)	2913, 2945, 4596, 6974
EcoT14I	CCWWGG	7 cut(s)	159, 687, 3930, 3975, 4533, 4775, 6654
EcoT22I	ATGCAT	4 cut(s)	1263, 1366, 5418, 6483
EcoT38I	GRGCYC	3 cut(s)	1026, 3213, 7501
EgeI	GGCGCC	2 cut(s)	376, 410
EheI	GGCGCC	2 cut(s)	376, 410
ErhI	CCWWGG	7 cut(s)	159, 687, 3930, 3975, 4533, 4775, 6654
Esp3I	CGTCTC	2 cut(s)	1089, 2281
FaqI	GGGAC	7 cut(s)	184, 413, 523, 579, 1453, 3249, 3677
FauI	CCCGC	4 cut(s)	89, 1190, 3645, 7687
FauNDI	CATATG	3 cut(s)	5689, 6214, 7178
FbaI	TGATCA	1 cut(s)	2743
FblI	GTMKAC	4 cut(s)	334, 1369, 2128, 6381
FriOI	GRGCYC	3 cut(s)	1026, 3213, 7501
GsaI	CCCAGC	2 cut(s)	3622, 6293
HaeII	RGCGCY	3 cut(s)	378, 412, 4738
HapII	CCGG	9 cut(s)	68, 168, 392, 406, 412, 2782, 4381, 5972, 7608
HgaI	GACGC	7 cut(s)	181, 957, 1922, 2298, 4576, 4830, 6084
Hin1I	GRCGYC	5 cut(s)	198, 375, 409, 949, 6095
HincII	GTYRAC	6 cut(s)	914, 2129, 2562, 4476, 5523, 6892
HindII	GTYRAC	6 cut(s)	914, 2129, 2562, 4476, 5523, 6892
HindIII	AAGCTT	7 cut(s)	618, 2950, 4509, 4637, 4725, 5531, 6461
HpaII	CCGG	9 cut(s)	68, 168, 392, 406, 412, 2782, 4381, 5972, 7608
Hsp92I	GRCGYC	5 cut(s)	198, 375, 409, 949, 6095
KasI	GGCGCC	2 cut(s)	374, 408
KflI	GGGWCCC	1 cut(s)	427
Kpn2I	TCCGGA	1 cut(s)	4380
KpnI	GGTACC	1 cut(s)	5317
Ksp22I	TGATCA	1 cut(s)	2743
LguI	GCTCTTC	1 cut(s)	4989
MabI	ACCWGGT	1 cut(s)	2353
MbiI	CCGCTC	2 cut(s)	4229, 7682
MfeI	CAATTG	5 cut(s)	1038, 2004, 2022, 7245, 7464
MlsI	TGGCCA	3 cut(s)	1176, 6332, 6471
MluI	ACGCGT	3 cut(s)	2088, 7126, 7147
MluNI	TGGCCA	3 cut(s)	1176, 6332, 6471
Mly113I	GGCGCC	2 cut(s)	375, 409
MmeI	TCCRAC	9 cut(s)	751, 1573, 1812, 2323, 2643, 3529, 3615, 6949, 7737
Mox20I	TGGCCA	3 cut(s)	1176, 6332, 6471
Mph1103I	ATGCAT	4 cut(s)	1263, 1366, 5418, 6483
MroI	TCCGGA	1 cut(s)	4380
MroXI	GAANNNNTTC	2 cut(s)	1621, 6306
MscI	TGGCCA	3 cut(s)	1176, 6332, 6471
MslI	CAYNNNNRTG	7 cut(s)	1071, 1733, 1770, 2684, 2751, 4053, 4263
Msp20I	TGGCCA	3 cut(s)	1176, 6332, 6471
MspA1I	CMGCKG	8 cut(s)	1228, 1283, 1502, 2305, 4160, 4172, 6359, 7601
MspCI	CTTAAG	4 cut(s)	1796, 3905, 6062, 7343
MspI	CCGG	9 cut(s)	68, 168, 392, 406, 412, 2782, 4381, 5972, 7608
MunI	CAATTG	5 cut(s)	1038, 2004, 2022, 7245, 7464
Mva1269I	GAATGC	4 cut(s)	421, 2568, 4570, 6143
NarI	GGCGCC	2 cut(s)	375, 409
NciI	CCSGG	3 cut(s)	168, 169, 2782
NcoI	CCATGG	2 cut(s)	687, 6654
NdeI	CATATG	3 cut(s)	5689, 6214, 7178
NheI	GCTAGC	1 cut(s)	7169
NmeAIII	GCCGAG	3 cut(s)	409, 445, 2836
NmuCI	GTSAC	9 cut(s)	181, 699, 805, 1144, 1411, 3155, 4330, 4364, 4391
NotI	GCGGCCGC	1 cut(s)	112
NruI	TCGCGA	1 cut(s)	7690
NsiI	ATGCAT	4 cut(s)	1263, 1366, 5418, 6483
NspI	RCATGY	9 cut(s)	1368, 1530, 1571, 1727, 4433, 5053, 5261, 5420, 7481
NspV	TTCGAA	1 cut(s)	140
OliI	CACNNNNGTG	1 cut(s)	2684
PaeI	GCATGC	4 cut(s)	1530, 1727, 5420, 7481
PagI	TCATGA	2 cut(s)	2572, 3436
PceI	AGGCCT	2 cut(s)	1653, 2646
PciI	ACATGT	3 cut(s)	1567, 4429, 5257
PciSI	GCTCTTC	1 cut(s)	4989
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 3667
PctI	GAATGC	4 cut(s)	421, 2568, 4570, 6143
PdmI	GAANNNNTTC	2 cut(s)	1621, 6306
Pfl23II	CGTACG	1 cut(s)	2843
PflMI	CCANNNNNTGG	4 cut(s)	878, 1379, 6482, 6758
PfoI	TCCNGGA	3 cut(s)	1318, 2860, 3985
PluTI	GGCGCC	2 cut(s)	378, 412
Ppu21I	YACGTR	2 cut(s)	1535, 5426
PpuMI	RGGWCCY	3 cut(s)	427, 3263, 5675
PscI	ACATGT	3 cut(s)	1567, 4429, 5257
PshBI	ATTAAT	1 cut(s)	3600
PsiI	TTATAA	1 cut(s)	5487
Psp124BI	GAGCTC	1 cut(s)	3213
Psp1406I	AACGTT	2 cut(s)	6181, 6503
Psp5II	RGGWCCY	3 cut(s)	427, 3263, 5675
PspFI	CCCAGC	2 cut(s)	3618, 6289
PspLI	CGTACG	1 cut(s)	2843
PspPPI	RGGWCCY	3 cut(s)	427, 3263, 5675
PsrI	GAACNNNNNNTAC	2 cut(s)	2334, 2366
PstI	CTGCAG	4 cut(s)	994, 4069, 4743, 5353
PstNI	CAGNNNCTG	5 cut(s)	1148, 1283, 1301, 1988, 4886
PvuII	CAGCTG	5 cut(s)	1283, 1502, 4160, 4172, 6359
RruI	TCGCGA	1 cut(s)	7690
RseI	CAYNNNNRTG	7 cut(s)	1071, 1733, 1770, 2684, 2751, 4053, 4263
SacI	GAGCTC	1 cut(s)	3213
SalI	GTCGAC	1 cut(s)	2127
SapI	GCTCTTC	1 cut(s)	4989
SbfI	CCTGCAGG	1 cut(s)	4743
ScaI	AGTACT	1 cut(s)	1665
SdaI	CCTGCAGG	1 cut(s)	4743
SexAI	ACCWGGT	1 cut(s)	2353
SfcI	CTRYAG	5 cut(s)	990, 2505, 4065, 4739, 5349
SfoI	GGCGCC	2 cut(s)	376, 410
SfuI	TTCGAA	1 cut(s)	140
SinI	GGWCC	7 cut(s)	427, 1679, 2513, 3263, 3551, 4154, 5675
SmaI	CCCGGG	1 cut(s)	169
SmiMI	CAYNNNNRTG	7 cut(s)	1071, 1733, 1770, 2684, 2751, 4053, 4263
SnaBI	TACGTA	1 cut(s)	1535
SpeI	ACTAGT	1 cut(s)	7202
SphI	GCATGC	4 cut(s)	1530, 1727, 5420, 7481
Sse8387I	CCTGCAGG	1 cut(s)	4743
SseBI	AGGCCT	2 cut(s)	1653, 2646
SspDI	GGCGCC	2 cut(s)	374, 408
SspI	AATATT	2 cut(s)	4521, 5171
SstI	GAGCTC	1 cut(s)	3213
StuI	AGGCCT	2 cut(s)	1653, 2646
StyI	CCWWGG	7 cut(s)	159, 687, 3930, 3975, 4533, 4775, 6654
TaqII	GACCGA	1 cut(s)	356
TatI	WGTACW	6 cut(s)	1663, 4717, 4815, 5395, 7363, 7505
TseFI	GTSAC	9 cut(s)	181, 699, 805, 1144, 1411, 3155, 4330, 4364, 4391
Tsp45I	GTSAC	9 cut(s)	181, 699, 805, 1144, 1411, 3155, 4330, 4364, 4391
TspGWI	ACGGA	4 cut(s)	169, 2861, 4232, 5394
TspMI	CCCGGG	1 cut(s)	167
Van91I	CCANNNNNTGG	4 cut(s)	878, 1379, 6482, 6758
Vha464I	CTTAAG	4 cut(s)	1796, 3905, 6062, 7343
VneI	GTGCAC	2 cut(s)	2084, 6944
VpaK11BI	GGWCC	7 cut(s)	427, 1679, 2513, 3263, 3551, 4154, 5675
VspI	ATTAAT	1 cut(s)	3600
XbaI	TCTAGA	1 cut(s)	2183
XceI	RCATGY	9 cut(s)	1368, 1530, 1571, 1727, 4433, 5053, 5261, 5420, 7481
XcmI	CCANNNNNNNNNTGG	9 cut(s)	157, 795, 1214, 4046, 4206, 5610, 6479, 6606, 6823
XmaI	CCCGGG	1 cut(s)	167
XmiI	GTMKAC	4 cut(s)	334, 1369, 2128, 6381
XmnI	GAANNNNTTC	2 cut(s)	1621, 6306
ZraI	GACGTC	1 cut(s)	199
ZrmI	AGTACT	1 cut(s)	1665
Zsp2I	ATGCAT	4 cut(s)	1263, 1366, 5418, 6483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.