Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002384.1

Orthogroup ID

OG0010166

Physical Location & Seq

Genomic Coordinates Reverse (-)

54689 .. 71109

Gene Structure 16421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002384.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 9375 bp

atggctcctccatgggttcaagagctccattttcctcacctgcacatccccatcactatcgaccacatgagtccggtcataccctcagggcctattccggtagctcctggccaaactctatacctttcgaacctagatgacatgatcggagctcgtgttttcactccaactgtatatttctactcgtcatatgaccgaagacctgttatgaaaatactacacgatgctcttgcaagtgtgttagtcccctactaccctttatcgggtaggctaagggaggccagaaatgggaaactagaagtgttttttgggcaagaacagggagcactgttggtggaggcacacactgaaatggccttggctgatctaggagacctcaaagtcccaaacccagcatggacgccactgatctttaggttcccaaacgaagaaccatacaaagtccttgacatgccattggtgatagctcaggtcactaatttcagctgtggtgggtttagcattggcttgagaatctgccattgcatctgtgacggtcttggtgctatgcaattcctcacctcatgggctgcaacagcaagagcaggcacattgatcactaacccagagccatgttgggacagagagtttttcagacctcgcaacccaccacttgtgaaattcccacacattgaattcatgagaatagaagatggctcaagcctcacaatgagtctatggcaaaccaaaccggttcaaaagtgctaccggataagccgcgagttccaaaccttgctgaaaactctggctcaaccgaaagataacatgtctaatgttgcatgcagcgcttttgatgccatggcagctcatgtatggagatcatgggtgaaagcacttgatgtaaaaccattgaactatgggcttaggctaaccttctctgccaatgcccgcaataaactcaaaaaccagacactaaaagatggtttttatggcaatgcagtgtgtctagcttgtgtcacaagcactgtgacaaagcttgttcatgggaggctctcggagattactcacttagttcgtgaagcccggcttggtatctccgaagagtacttaagatcaacggtggactatgttgaagtagacagaccaagaaaactggaatttggaggcaaattgacaataactcagtggactagatttccaatgtatgattctgctgattttggatggggaaggcctatatatgctggtccgatcgatctcactcctacaccacaagtctctgtttttctgccggaagctgaggctgatcatcctagtgggacaatgctcgtttgcatttgcttgcctgaatctgctactcatagcttcacagaacttctgtctcttacacattccggtgatccaaatcatagtggcaccgcccgtaaatatccgtcagagctgggggcgaatcactctcgttctcgggctccggccgcggctccttctccccttcctccctggctcttcttcctccgccgcaacaatgcgcctcgccctcacaccctccacttcctcccgcacgtagattccgtctcccgccaccacgtctccgatcaccgccctcctcctccgtcgccgactcagccacgcatggaccaacctaacacctccactgcttcttcctcttcctcttccccttcttcccgttctgcccctgtcgaagagccggagtacctcgcgcgctacttagtcgtcaagcactcgtggcgcggccgctacaagcggattctctgcctctcgagcgcctccatcgtcaccttggacccgtccaccctcgccgtcacgaactcgtacgtcgtcgcgtcggatttcgacaccgccgccccgatcatcggccgcgacgagagctccagtgagttcaatttgagtgttcggactgacggcagggggaagttcaagtcggtgaagttctcgtccaggtatagggcgagcatactgaccgagctgcataggattaggggcaatcggcttggggtagtagcggaatttccagtgcttcatctccggcgacggactggagagtgggttccttttaaactaaaagttacttatgttggggttgaacttattgatttaaaatgcggagacctccgctggtgcttggattttagagattttcattcccctgccattatttccctttccgatgcttacgggaagaaaggcattgaaggaggttttattatttgtccttcatatggaagaaaatcgaaagcttttcaagctgcttctggaacgacaaattctactatcattgctaatttgactaaaacagcaaaatctatggtcggggtgtcactaaatgtggaaacttctcagtctctcactatagcagagtatataaagcgaagagcaaaagaagcagttggagcagatgaaactccatgtggaggttggtctgtgacaagattgcgctctgctgctcgtggaactctaaatgttccaggattgaatttgagcgttggcccaaaaggtggacttggggagcatggtgatgctgtatctcgtcaattgattcttacaaaagtttcacttgttgaaagacgcccagagaactatgaagctgtcatcgttcgacctttatctgcagtaaatgcccttgttcgatttactgaggagcctcagatgtttgcaattgagttcaatgatggatgccccatccatgtatatgcaagcacctctcgtgatagcttacttgcagcagttcgtgatctgttgcaaacagaaggtcaatgtgctatggctgtgttaccaagactgacgatgcctggccatcgcattgatccaccttgcggtagagttaatttacaatttggactacaacggcctattgcagatatggagagtgcatccatgcatttgaagcacttagcagcagctgccaaagatgcagtttctgaaggtggttccattccgggatcaagagctaagctctggcgcagaataagagagttcaatgcatgcataccatatactggagtccctcctaacatagaattacctgaggtgactttgatggctttaataacaatgcttccagctacgccaaatcttcctccagagtcccctcccttgccacccccttcacctaaagcagctgcaacagtcatgggctttattgcatgtttacgtagattgttggcttcaagaactgcagcttcacatgtcatgtcttttcctgctgctgttggaagaataatgggcttactcagaaatggttcagagggtgtagccgctgaagctgcaggccttattgcagttcttattggtggtggtcctggggatacaaatatattgacagattctaaaggtgagcattatgccacaatcatgcacacaaagtcagtgttgtttgcgcaacaaggttatgtcattatacttgccaatagactgaagcctatgtctgtatcaccactattatcaatggccgttgttgaggttcttgaggcaatgatatgtgatccacatggtgagacaacacagtacccagtgtttgttgaactattacgccaagtagctggtttgaaacgtcgtttgtttgcattgtttggacatcctgctgaaagtgttcgggaaacagtggctgtgattatgcgtacaattgctgaagaagatgcaattgcagcagagtccatgcgcgatgctgcattgcgtgatggtgctttgttgaggcatttattgcacgcgttcttccttccggctggtgagcgacgtgaggttagtcgacagcttgttgctctttgggcagattcgtatcaacccgctctggatttattgtctagagttctgcctcctggacttgttgcttatttgcacacaaaatctgatggagttctatcagaagagtctaatcaagaagtttccttgaccagtagaagacagagacgcttacttcaacagaggagaggccgtaccggaagaggagcaacatcccaggagcattccttgccttctgtaaacaattatgatgtgaatgaccccatgacacagacaagtggtgatgtctcgaaagtgtcaaataactatcaaagatctgcaatggatccaaattctggacaggctccgaccattcaatcttctggtgctcaaactggtgaaaacttgactggtgaagtatcctctactggggctccgcaaagcaataatacatctattgtggcttcagctgatgctccatcaacaggtgttcatgcttcattggcagcaaatactgcaatctcaacagattctgactccaatgttgctggtttccataatacgggtctccctgcccctgctcaggttgttgtggaaaacactcctgtgggatctggtaggcttctgtgtaattggcctgaattctggcgagcatttagccttgatcataatcgtgcagatttgatctggaatgagcgtaccaggcaagagttaagggaggccttgcaggctgaggttcataacttagatgttgagaaagagcgtacagaagatattgttccaagaggttctgcagtagagatggctggacaagatagtgtgccgcagatatcttggaactactctgagttctctgtcggatatcctagtttgtctaaagaagtttgtgtgggtcagtattatctccgcttgctgcttgagagtggcagtggtggcagggcacaagaatttccactgcgtgatcctgttgccttctttagagcactctatcatcgtttcttatgtgatgcagacatagggcttacagtagatggtgctgttccggatgaaatgggtgcatctgatgattggtgcgacatgggaagactagatggttttggaggtggagggggattttcagttagggagctttgtgcaagagcaatgacaattgtatatgaacagcattacaaaacagtaggtccctttgagggtactgctcacattacagttctgttggacaggacagatgatagggctttgaggcaccgccttctgttgcttttgaaggctttaatgaaggtgttatcaaatgtggaggcttgcgtcttggttggaggatgtgtgctaggtgttgacatgctgacagctgttcatgaagcttctgaaaggacggctattcctttgcaatccaacttgattgctgctactgccttcatggaaccgctcaaggaatggatgttttttgacaaggaaggagcacaagttggacctgttgaaaaggatgcaataagaagattctggtccaagaaggcaattgattggacaacaaagtgctgggcttctgggatgctagactggaagaggttacgtgatattcgtgaacttcgttgggcgctagctgttcgggttcctgttctcacaccagctcaggttggggaggcggcattgtccatattgcatagcatggtatctgcacattctgatttagatgatgctggagaaatagttaccccaactcctagagtaaaaaggatattgtcaagtccgcgttgtcttccgcatattgctcaggccatgctttctggagaaccaagtattgtagagagtgctgctgcattactgaaggctgttgttaccagaaatccgaaggccatgattcgtctatacagcacaggcgcattttatttttccctggcatatcctggatcaaatctcctttcaattgcccaactcttttcagtgactcatgttcaccaagcatttcatggtggcgaagatgctgcagtttcctcttccttacctctggcgaaacgcagtgtattgggtgggcttcttcctgaatctttgctgtatgtattagagcgtagtggtccaggtgcatttgcagctgcaatggtatctgattctgatactccagagattatatggactcacaagatgcgagcagataatctgatacgtcaggttttgcaacatcttggtgactttccccagaaattgtcacagcactgccattgtctatatgagtatgctcctatgccgccagtgacatacccagagctaagagatgaaatgtggtgtcaccgttattacctccgcaacttatgtgatgagattagattcccaaattggccaattgttgaacatgttgagtttctacagtcattactggtaatgtggcgtgaggaacttacgagaagaccgatggatctttctgaggaagaagcttgcaaaatattagagatttccttggaagatgtgtcaagtgatgatgccaatatgaaacattctgttgagatggttgaggatacgtctagcatatccaagcagattgagaatattgatgaagaaaagctcaagcgacaatataggaaacttgccatgagataccatccagacaaaaatcctgaaggaagggataagtttcttgctgtacagaaagcttatgagcgcctgcaggccactatgcaaggcttgcaaggccctcaggcttggcggttgttgcttttattgaaagggcaatgcatcttgtacagaagatatggagatatattggaaccgtttaaatatgctgggtatccgatgttgctcagtgcagttactgtggacaaggatgataacaattttctttccttagagagagcacctctccttgttgcagcatcagagcttatttggcttacgtgtgcatcttcttcattgaatggtgaagagcttgtgagggatggtggcatacaacttcttggaaatcttctttcccgttgcatgtgtgtagttcagccaactactcctgcaagtgaaccatctgctataattgttacaaatgttatgcacaccttctgtgttttgagtcaatttgagagtgcctgggcagagatactcgaatattctggactagttgatgatattgtgcactgcactgagctggagcttgtacctgctgctgtagatgctgccctccagactattgcccatgtttctgtgtctactcaattgcaagatgccttgcttaaggctggtgtcttatggtaccttttgcccgtgctgcttcagtatgactctactgcagaggaatctgatacaacagaatcacatggtgttggtgctagcgtacagattgccaaaaatatgcatgctatacgtgcatcacaggcgctatcaaggcttagtggtttgtgtagtaatgagagttcaacaccttataatcagactgcagctgatgccctcagagctttgttgactccaaaacttgccagtatgttaaaagatcaagctcctaaagacctactgtcaaaattaaacaataacttggagtctccagagattatctggaactcttccacccgagcagaactactgaagtttgtggatcagcaacgtgcaagtcagggtccagacggctcatatgacctgaaagattcgcatatgtttgtgtacaaggcactgtcaaaagaactttatgttggcaatgtttacttgagggtgtataacaatcagcccgattttgatattagtgaaccagaggctttctgtgtcgctttaattgattttatatcatatctagtacacaatcaatgttctcaagattcagaagttcatgatgagccaaagcaggatggctcatcccttgaaacatctgagcatcctaatgatatggctattagatcagtggatgaacttagtgctccagttgaagatttgacattatccaacggcaaagtggcagacaaagaagaatctcaagtggtcaaaaaccttaagtttgcattgaattcactcaagaacatactgacaagcagtccaaatttggcgtcaattttttctactaaagacaagcttttgcctctttttgaatgcttctctgtgcctgttgcaccagaaagtaacatacctcaactttgcctgagtgtgttgtcactcttgacaacgtatgctccctgcttggaggctatggttgcagatggatctagccttctccttttattgcaaatgcttcactcagccccaagttgtcgtgagggggttcttcatgttctatatgctctggcaagcacaccagagcttgcttgggcagctgccaagcatggaggagtggtctacattcttgagcttctcttgcctttgcaggaagaaatttccttgcagcaaagagcagctgcagcctctttgttggggaagcttgttgggcagccaatgcatgggccaagagttgctataacgctagcaaggtttcttcctgatggcttggtatcagttattagggatggacctggtgaagctgttgtagttgcccttgaacagactactgagactccagaacttgtatggacaccagcgatggctacttctctgtctgcacaaatcgcgacgatggcagcagatctataccaagaacaaatgaaaggccgtgttgttgactgggacgtacctgagcaggcatctgggcagcaagaaatgagagatgagccgcaggttggtggaatatatattaggttattcttaaaagatcctaaattccctctcagaaatccaaagaggttcttggaaggactgctagatcagtatttgacatccattgccgccacacattatgaaacacaagctgtcgaccctgaacttcctttgctcctgtctgctgctttggtttcattattgcgagtacatcctgcccttgcagatcatgttggataccttggatatgtgcccaaactagtggctgctgtggcttatgaaggaagacgagaaacaatggcatcgggggaggtgaacaatggaaactatgtggacagagcagaggagtctgatgatacacagcctgcccaaactccccaagaacgtgtgcgcctcagttgtctgcgcgttctacatcaattggcagctagcaccacatgtgctgaagctatggcagcaactagtgtaggaacacctcaggttgttcctcttctaatgaaagctataggatggcaaggtggaagcatactagctctggagaccctaaagcgtgttgttgttgctggaaaccgagctagggatgcactcgttgcacaaggacttaaggttggtcttgttgaagtacttcttggccttcttgattggagagctgggggaaggaatggactttgctctcagatgaagtggaatgaatctgaagcatctattggcagagtgctagcaattgaggttttgcatgcattcgcgacggagggggcccactgtactaaagtgcgggacttattgaattcctcagatgtttggagtgcttataaagatcagaaacatgatcttttccttccttcaagtgctcaatctgctgccgctggaattgctgggctaatagaaaattcatcatcaagactcacttatgccattacagctcctccatcacaaccctctacatcgagacctccagcgtcaactacatttgaatcaaatggaagatatgatcagctatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006897 GO:0006898 GO:0006955 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032879 GO:0032940 GO:0035577 GO:0036230 GO:0042119 GO:0042582 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043299 GO:0043312 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0060341 GO:0060627 GO:0065007 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099503 GO:1902954 GO:1903649 GO:2000641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 DnaJ

Protein Analysis

3124

Amino Acids

342.74

Weight (kDa)

6.1

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26890
fragaria_vesca	FvH4_1g04290 FvH4_1g04290 FvH4_1g04983
malus_domestica	MD02G1042600.v1.1 MD15G1181200.v1.1
prunus_persica	Prupe.7G234400_v2.0.a1 Prupe.7G234400_v2.0.a1
pyrus_communis	pycom02g03540 pycom15g16350
rosa_chinensis	RchiOBHm_Chr2g0089861
rosa_laevigata	RLG00000016062
rosa_multiflora	Rmu_co8299847.1_g000001 Rmu_sc0002384.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151530
rosa_rugosa	Rorug02G0003700
rosa_samantha	Rh2AG049000 Rh2BG047900 Rh2CG050000 Rh2DG049100
rosa_wichuraiana	Rw2G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	7122, 9183
AarI	CACCTGC	1 cut(s)	48
AasI	GACNNNNNNGTC	1 cut(s)	380
Acc16I	TGCGCA	1 cut(s)	3378
Acc36I	ACCTGC	3 cut(s)	48, 6865, 8380
Acc65I	GGTACC	1 cut(s)	6948
AccB1I	GGYRCC	3 cut(s)	1394, 4962, 6948
AccB7I	CCANNNNNTGG	4 cut(s)	2495, 2996, 4073, 8117
AccBSI	CCGCTC	2 cut(s)	3785, 5143
AccI	GTMKAC	5 cut(s)	1116, 3745, 6905, 8016, 8526
AccIII	TCCGGA	1 cut(s)	4759
AcoI	YGGCCR	7 cut(s)	109, 1452, 1732, 1855, 2791, 3447, 6050
AcyI	GRCGYC	3 cut(s)	401, 2566, 7730
AdeI	CACNNNGTG	3 cut(s)	3491, 4676, 7016
AfeI	AGCGCT	1 cut(s)	826
AflII	CTTAAG	4 cut(s)	1087, 6929, 7676, 8972
AflIII	ACRYGT	7 cut(s)	804, 3184, 3705, 6064, 6602, 8755, 8807
AgeI	ACCGGT	1 cut(s)	730
AhdI	GACNNNNNGTC	2 cut(s)	7207, 7716
AhlI	ACTAGT	3 cut(s)	6814, 8629, 8831
AjiI	CACGTC	2 cut(s)	1567, 3734
AleI	CACNNNNGTG	1 cut(s)	4322
AloI	GAACNNNNNNTCC	2 cut(s)	2031, 2063
Alw44I	GTGCAC	1 cut(s)	6830
AlwNI	CAGNNNCTG	5 cut(s)	2900, 2918, 3605, 4250, 6521
Ama87I	CYCGRG	3 cut(s)	1443, 1759, 7263
Aor13HI	TCCGGA	1 cut(s)	4759
Aor51HI	AGCGCT	1 cut(s)	826
ApaI	GGGCCC	1 cut(s)	9130
ApaLI	GTGCAC	1 cut(s)	6830
ArsI	GACNNNNNNTTYG	4 cut(s)	2734, 2766, 7715, 7747
AsiGI	ACCGGT	1 cut(s)	730
Asp700I	GAANNNNTTC	3 cut(s)	3238, 3588, 8994
Asp718I	GGTACC	1 cut(s)	6948
AsuC2I	CCSGG	2 cut(s)	1063, 2937
AsuII	TTCGAA	1 cut(s)	128
AsuNHI	GCTAGC	5 cut(s)	5314, 7025, 8140, 8798, 9088
AvaI	CYCGRG	3 cut(s)	1443, 1759, 7263
AxyI	CCTNAGG	4 cut(s)	85, 3024, 6405, 8847
BaeGI	GKGCMC	4 cut(s)	4660, 6834, 8625, 9130
BalI	TGGCCA	3 cut(s)	111, 2793, 6052
BamHI	GGATCC	1 cut(s)	4063
BanI	GGYRCC	3 cut(s)	1394, 4962, 6948
BanII	GRGCYC	6 cut(s)	27, 154, 1450, 1871, 4153, 9130
BauI	CACGAG	4 cut(s)	153, 1723, 2445, 2703
BbsI	GAAGAC	6 cut(s)	205, 3904, 4807, 5465, 6124, 8662
BbvCI	CCTCAGC	2 cut(s)	1278, 4449
BceAI	ACGGC	9 cut(s)	1784, 1918, 2861, 3434, 3915, 5106, 7333, 7648, 8310
BcgI	CGANNNNNNTGC	4 cut(s)	212, 246, 5681, 5715
BciVI	GTATCC	5 cut(s)	3298, 4147, 6220, 6507, 8600
BclI	TGATCA	4 cut(s)	594, 1285, 4381, 9361
BcnI	CCSGG	2 cut(s)	1063, 2937
BcuI	ACTAGT	3 cut(s)	6814, 8629, 8831
BfoI	RGCGCY	5 cut(s)	828, 1767, 5315, 6373, 7076
BfrI	CTTAAG	4 cut(s)	1087, 6929, 7676, 8972
BfuAI	ACCTGC	3 cut(s)	48, 6865, 8380
BfuI	GTATCC	5 cut(s)	3298, 4147, 6220, 6507, 8600
BglI	GCCNNNNNGGC	1 cut(s)	4445
BglII	AGATCT	2 cut(s)	4052, 8299
BlpI	GCTNAGC	1 cut(s)	2949
BmcAI	AGTACT	2 cut(s)	1085, 8994
BmeRI	GACNNNNNGTC	2 cut(s)	7207, 7716
BmeT110I	CYCGRG	3 cut(s)	1443, 1759, 7263
BmgBI	CACGTC	2 cut(s)	1567, 3734
BmrI	ACTGGG	3 cut(s)	3503, 4155, 8347
BmtI	GCTAGC	5 cut(s)	5318, 7029, 8144, 8802, 9092
BmuI	ACTGGG	3 cut(s)	3503, 4155, 8347
BpiI	GAAGAC	6 cut(s)	205, 3904, 4807, 5465, 6124, 8662
BplI	GAGNNNNNCTC	6 cut(s)	2937, 2969, 6550, 6582, 6552, 6584
Bpu10I	CCTNAGC	9 cut(s)	272, 468, 902, 1278, 4299, 4449, 5346, 5487, 8349
Bpu1102I	GCTNAGC	1 cut(s)	2949
Bpu14I	TTCGAA	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	1063, 2937
Bsa29I	ATCGAT	1 cut(s)	1233
BsaAI	YACGTR	5 cut(s)	1543, 3152, 5288, 6603, 7061
BsaBI	GATNNNNATC	3 cut(s)	1383, 3774, 4386
BsaHI	GRCGYC	3 cut(s)	401, 2566, 7730
BsaI	GGTCTC	5 cut(s)	366, 2100, 4289, 8903, 9313
BsaWI	WCCGGW	7 cut(s)	73, 97, 730, 747, 1373, 3935, 4759
Bse118I	RCCGGY	1 cut(s)	730
Bse21I	CCTNAGG	4 cut(s)	85, 3024, 6405, 8847
Bse8I	GATNNNNATC	3 cut(s)	1383, 3774, 4386
BseAI	TCCGGA	1 cut(s)	4759
BseCI	ATCGAT	1 cut(s)	1233
BseJI	GATNNNNATC	3 cut(s)	1383, 3774, 4386
BsePI	GCGCGC	1 cut(s)	1700
BseRI	GAGGAG	8 cut(s)	1575, 1578, 2651, 3937, 3957, 8022, 8729, 9285
BseSI	GKGCMC	4 cut(s)	4660, 6834, 8625, 9130
BseX3I	CGGCCG	3 cut(s)	1452, 1732, 1855
BseYI	CCCAGC	6 cut(s)	391, 1420, 5253, 6491, 9020, 9245
BsgI	GTGCAG	6 cut(s)	26, 4413, 5376, 6534, 6820, 8259
Bsh1285I	CGRYCG	4 cut(s)	1233, 1455, 1735, 1858
BshNI	GGYRCC	3 cut(s)	1394, 4962, 6948
BshTI	ACCGGT	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	1233
BsiEI	CGRYCG	4 cut(s)	1233, 1455, 1735, 1858
BsiHKCI	CYCGRG	3 cut(s)	1443, 1759, 7263
BsiWI	CGTACG	1 cut(s)	1812
BslFI	GGGAC	9 cut(s)	230, 368, 632, 1312, 2987, 3070, 4884, 8354, 9161
BsmBI	CGTCTC	3 cut(s)	1558, 1573, 3898
BsmFI	GGGAC	9 cut(s)	230, 368, 632, 1312, 2987, 3070, 4884, 8354, 9161
BsmI	GAATGC	3 cut(s)	3961, 7778, 9110
Bso31I	GGTCTC	5 cut(s)	366, 2100, 4289, 8903, 9313
BsoBI	CYCGRG	3 cut(s)	1443, 1759, 7263
Bsp119I	TTCGAA	1 cut(s)	128
Bsp120I	GGGCCC	1 cut(s)	9126
Bsp13I	TCCGGA	1 cut(s)	4759
Bsp1407I	TGTACA	3 cut(s)	6352, 6450, 7353
Bsp1720I	GCTNAGC	1 cut(s)	2949
Bsp19I	CCATGG	2 cut(s)	11, 837
Bsp68I	TCGCGA	2 cut(s)	8285, 9116
BspDI	ATCGAT	1 cut(s)	1233
BspEI	TCCGGA	1 cut(s)	4759
BspHI	TCATGA	3 cut(s)	678, 5071, 7516
BspMAI	CTGCAG	9 cut(s)	2611, 3178, 3268, 4513, 5704, 6378, 6988, 7135, 8080
BspMI	ACCTGC	3 cut(s)	48, 6865, 8380
BspOI	GCTAGC	5 cut(s)	5318, 7029, 8144, 8802, 9092
BspQI	GCTCTTC	4 cut(s)	1490, 1677, 2365, 6624
BspT104I	TTCGAA	1 cut(s)	128
BspT107I	GGYRCC	3 cut(s)	1394, 4962, 6948
BspTI	CTTAAG	4 cut(s)	1087, 6929, 7676, 8972
BspTNI	GGTCTC	5 cut(s)	366, 2100, 4289, 8903, 9313
BsrBI	CCGCTC	2 cut(s)	3785, 5143
BsrFI	RCCGGY	1 cut(s)	730
BsrGI	TGTACA	3 cut(s)	6352, 6450, 7353
BssAI	RCCGGY	1 cut(s)	730
BssHII	GCGCGC	1 cut(s)	1700
BssNI	GRCGYC	3 cut(s)	401, 2566, 7730
BssSI	CACGAG	4 cut(s)	153, 1723, 2445, 2703
BssT1I	CCWWGG	6 cut(s)	11, 357, 837, 1779, 6168, 8611
Bst2BI	CACGAG	4 cut(s)	153, 1723, 2445, 2703
BstACI	GRCGYC	3 cut(s)	401, 2566, 7730
BstAFI	CTTAAG	4 cut(s)	1087, 6929, 7676, 8972
BstAPI	GCANNNNNTGC	9 cut(s)	2615, 2900, 3700, 3967, 4232, 6394, 7139, 8113, 8960
BstAUI	TGTACA	3 cut(s)	6352, 6450, 7353
BstBAI	YACGTR	5 cut(s)	1543, 3152, 5288, 6603, 7061
BstBI	TTCGAA	1 cut(s)	128
BstDSI	CCRYGG	3 cut(s)	11, 837, 1455
BstH2I	RGCGCY	5 cut(s)	828, 1767, 5315, 6373, 7076
BstMCI	CGRYCG	4 cut(s)	1233, 1455, 1735, 1858
BstSLI	GKGCMC	4 cut(s)	4660, 6834, 8625, 9130
BstSNI	TACGTA	1 cut(s)	3152
BstV2I	GAAGAC	6 cut(s)	205, 3904, 4807, 5465, 6124, 8662
BstX2I	RGATCY	7 cut(s)	4052, 4063, 4328, 6127, 7883, 8299, 8425
BstXI	CCANNNNNNTGG	2 cut(s)	3539, 8632
BstYI	RGATCY	7 cut(s)	4052, 4063, 4328, 6127, 7883, 8299, 8425
BstZI	CGGCCG	3 cut(s)	1452, 1732, 1855
Bsu15I	ATCGAT	1 cut(s)	1233
Bsu36I	CCTNAGG	4 cut(s)	85, 3024, 6405, 8847
BsuI	GTATCC	5 cut(s)	3298, 4147, 6220, 6507, 8600
BsuTUI	ATCGAT	1 cut(s)	1233
BtgI	CCRYGG	3 cut(s)	11, 837, 1455
BtgZI	GCGATG	3 cut(s)	2780, 3675, 8270
BtrI	CACGTC	2 cut(s)	1567, 3734
BtsI	GCAGTG	7 cut(s)	984, 1632, 4651, 4670, 5740, 5926, 6832
BtuMI	TCGCGA	2 cut(s)	8285, 9116
BveI	ACCTGC	3 cut(s)	48, 6865, 8380
CaiI	CAGNNNCTG	5 cut(s)	2900, 2918, 3605, 4250, 6521
CciI	TCATGA	3 cut(s)	678, 5071, 7516
CciNI	GCGGCCGC	1 cut(s)	1732
Cfr10I	RCCGGY	1 cut(s)	730
Cfr42I	CCGCGG	1 cut(s)	1458
ClaI	ATCGAT	1 cut(s)	1233
CseI	GACGC	7 cut(s)	409, 1812, 2574, 3915, 5011, 7719, 9318
CsiI	ACCWGGT	1 cut(s)	8188
CspAI	ACCGGT	1 cut(s)	730
DraI	TTTAAA	3 cut(s)	2056, 2097, 6484
DraIII	CACNNNGTG	3 cut(s)	3491, 4676, 7016
DrdI	GACNNNNNNGTC	1 cut(s)	380
DriI	GACNNNNNGTC	2 cut(s)	7207, 7716
DseDI	GACNNNNNNGTC	1 cut(s)	380
EaeI	YGGCCR	7 cut(s)	109, 1452, 1732, 1855, 2791, 3447, 6050
EagI	CGGCCG	3 cut(s)	1452, 1732, 1855
Eam1105I	GACNNNNNGTC	2 cut(s)	7207, 7716
EciI	GGCGGA	1 cut(s)	1484
Ecl136II	GAGCTC	3 cut(s)	25, 152, 1869
EclXI	CGGCCG	3 cut(s)	1452, 1732, 1855
Eco105I	TACGTA	1 cut(s)	3152
Eco130I	CCWWGG	6 cut(s)	11, 357, 837, 1779, 6168, 8611
Eco147I	AGGCCT	3 cut(s)	1213, 3270, 4439
Eco24I	GRGCYC	6 cut(s)	27, 154, 1450, 1871, 4153, 9130
Eco31I	GGTCTC	5 cut(s)	366, 2100, 4289, 8903, 9313
Eco32I	GATATC	2 cut(s)	4548, 4580
Eco47III	AGCGCT	1 cut(s)	826
Eco52I	CGGCCG	3 cut(s)	1452, 1732, 1855
Eco53kI	GAGCTC	3 cut(s)	25, 152, 1869
Eco81I	CCTNAGG	4 cut(s)	85, 3024, 6405, 8847
Eco88I	CYCGRG	3 cut(s)	1443, 1759, 7263
EcoICRI	GAGCTC	3 cut(s)	25, 152, 1869
EcoO109I	RGGNCCY	4 cut(s)	89, 4898, 6401, 9126
EcoRI	GAATTC	4 cut(s)	674, 4358, 7690, 9157
EcoRV	GATATC	2 cut(s)	4548, 4580
EcoT14I	CCWWGG	6 cut(s)	11, 357, 837, 1779, 6168, 8611
EcoT22I	ATGCAT	7 cut(s)	2880, 2983, 2987, 6446, 7053, 8118, 9112
EcoT38I	GRGCYC	6 cut(s)	27, 154, 1450, 1871, 4153, 9130
ErhI	CCWWGG	6 cut(s)	11, 357, 837, 1779, 6168, 8611
Esp3I	CGTCTC	3 cut(s)	1558, 1573, 3898
FaqI	GGGAC	9 cut(s)	230, 368, 632, 1312, 2987, 3070, 4884, 8354, 9161
FauI	CCCGC	5 cut(s)	935, 1545, 1565, 3790, 9138
FauNDI	CATATG	4 cut(s)	190, 2218, 7324, 7344
FbaI	TGATCA	4 cut(s)	594, 1285, 4381, 9361
FblI	GTMKAC	5 cut(s)	1116, 3745, 6905, 8016, 8526
FriOI	GRGCYC	6 cut(s)	27, 154, 1450, 1871, 4153, 9130
FspI	TGCGCA	1 cut(s)	3378
GsaI	CCCAGC	6 cut(s)	395, 1424, 5257, 6495, 9024, 9249
HaeII	RGCGCY	5 cut(s)	828, 1767, 5315, 6373, 7076
HgaI	GACGC	7 cut(s)	409, 1812, 2574, 3915, 5011, 7719, 9318
Hin1I	GRCGYC	3 cut(s)	401, 2566, 7730
HincII	GTYRAC	6 cut(s)	3746, 5053, 7158, 8335, 8527, 9333
HindII	GTYRAC	6 cut(s)	3746, 5053, 7158, 8335, 8527, 9333
HindIII	AAGCTT	7 cut(s)	1013, 2235, 5076, 6144, 6360, 7754, 8096
Hsp92I	GRCGYC	3 cut(s)	401, 2566, 7730
Kpn2I	TCCGGA	1 cut(s)	4759
KpnI	GGTACC	1 cut(s)	6952
Ksp22I	TGATCA	4 cut(s)	594, 1285, 4381, 9361
KspI	CCGCGG	1 cut(s)	1458
LguI	GCTCTTC	4 cut(s)	1490, 1677, 2365, 6624
MabI	ACCWGGT	1 cut(s)	8188
MbiI	CCGCTC	2 cut(s)	3785, 5143
MflI	RGATCY	7 cut(s)	4052, 4063, 4328, 6127, 7883, 8299, 8425
MlsI	TGGCCA	3 cut(s)	111, 2793, 6052
MluI	ACGCGT	1 cut(s)	3705
MluNI	TGGCCA	3 cut(s)	111, 2793, 6052
Mox20I	TGGCCA	3 cut(s)	111, 2793, 6052
Mph1103I	ATGCAT	7 cut(s)	2880, 2983, 2987, 6446, 7053, 8118, 9112
MroI	TCCGGA	1 cut(s)	4759
MroXI	GAANNNNTTC	3 cut(s)	3238, 3588, 8994
MscI	TGGCCA	3 cut(s)	111, 2793, 6052
Msp20I	TGGCCA	3 cut(s)	111, 2793, 6052
MspCI	CTTAAG	4 cut(s)	1087, 6929, 7676, 8972
Mva1269I	GAATGC	3 cut(s)	3961, 7778, 9110
NciI	CCSGG	2 cut(s)	1063, 2937
NcoI	CCATGG	2 cut(s)	11, 837
NdeI	CATATG	4 cut(s)	190, 2218, 7324, 7344
NheI	GCTAGC	5 cut(s)	5314, 7025, 8140, 8798, 9088
NotI	GCGGCCGC	1 cut(s)	1732
NruI	TCGCGA	2 cut(s)	8285, 9116
NsbI	TGCGCA	1 cut(s)	3378
NsiI	ATGCAT	7 cut(s)	2880, 2983, 2987, 6446, 7053, 8118, 9112
NspV	TTCGAA	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	4322
PaeI	GCATGC	4 cut(s)	822, 2985, 7055, 9110
PaeR7I	CTCGAG	1 cut(s)	1759
PagI	TCATGA	3 cut(s)	678, 5071, 7516
PaqCI	CACCTGC	1 cut(s)	48
PauI	GCGCGC	1 cut(s)	1700
PceI	AGGCCT	3 cut(s)	1213, 3270, 4439
PciI	ACATGT	4 cut(s)	804, 3184, 6064, 8807
PciSI	GCTCTTC	4 cut(s)	1490, 1677, 2365, 6624
PcsI	WCGNNNNNNNCGW	5 cut(s)	1548, 1860, 5293, 5302, 6119
PctI	GAATGC	3 cut(s)	3961, 7778, 9110
PdmI	GAANNNNTTC	3 cut(s)	3238, 3588, 8994
Pfl23II	CGTACG	1 cut(s)	1812
PflMI	CCANNNNNTGG	4 cut(s)	2495, 2996, 4073, 8117
PfoI	TCCNGGA	4 cut(s)	2464, 2935, 3814, 5620
PinAI	ACCGGT	1 cut(s)	730
Ple19I	CGATCG	1 cut(s)	1233
Ppu21I	YACGTR	5 cut(s)	1543, 3152, 5288, 6603, 7061
PpuMI	RGGWCCY	1 cut(s)	4898
PscI	ACATGT	4 cut(s)	804, 3184, 6064, 8807
PsiI	TTATAA	2 cut(s)	7122, 9183
Psp124BI	GAGCTC	3 cut(s)	27, 154, 1871
Psp5II	RGGWCCY	1 cut(s)	4898
PspFI	CCCAGC	6 cut(s)	391, 1420, 5253, 6491, 9020, 9245
PspLI	CGTACG	1 cut(s)	1812
PspOMI	GGGCCC	1 cut(s)	9126
PspPPI	RGGWCCY	1 cut(s)	4898
PsrI	GAACNNNNNNTAC	2 cut(s)	7093, 7125
PstI	CTGCAG	9 cut(s)	2611, 3178, 3268, 4513, 5704, 6378, 6988, 7135, 8080
PstNI	CAGNNNCTG	5 cut(s)	2900, 2918, 3605, 4250, 6521
PsuI	RGATCY	7 cut(s)	4052, 4063, 4328, 6127, 7883, 8299, 8425
PteI	GCGCGC	1 cut(s)	1700
PvuI	CGATCG	1 cut(s)	1233
PvuII	CAGCTG	9 cut(s)	486, 2900, 3119, 4187, 5066, 5807, 7136, 7994, 8075
RruI	TCGCGA	2 cut(s)	8285, 9116
SacI	GAGCTC	3 cut(s)	27, 154, 1871
SacII	CCGCGG	1 cut(s)	1458
SalI	GTCGAC	2 cut(s)	3744, 8525
SapI	GCTCTTC	4 cut(s)	1490, 1677, 2365, 6624
SbfI	CCTGCAGG	1 cut(s)	6378
ScaI	AGTACT	2 cut(s)	1085, 8994
SdaI	CCTGCAGG	1 cut(s)	6378
SexAI	ACCWGGT	1 cut(s)	8188
Sfr274I	CTCGAG	1 cut(s)	1759
Sfr303I	CCGCGG	1 cut(s)	1458
SfuI	TTCGAA	1 cut(s)	128
SgrBI	CCGCGG	1 cut(s)	1458
SlaI	CTCGAG	1 cut(s)	1759
SnaBI	TACGTA	1 cut(s)	3152
SpeI	ACTAGT	3 cut(s)	6814, 8629, 8831
SphI	GCATGC	4 cut(s)	822, 2985, 7055, 9110
Sse8387I	CCTGCAGG	1 cut(s)	6378
SseBI	AGGCCT	3 cut(s)	1213, 3270, 4439
SspI	AATATT	3 cut(s)	6156, 6259, 6806
SstI	GAGCTC	3 cut(s)	27, 154, 1871
StuI	AGGCCT	3 cut(s)	1213, 3270, 4439
StyI	CCWWGG	6 cut(s)	11, 357, 837, 1779, 6168, 8611
TaqII	GACCGA	3 cut(s)	210, 1976, 6136
TatI	WGTACW	8 cut(s)	1083, 6352, 6450, 7353, 7483, 8578, 8992, 9134
TspGWI	ACGGA	5 cut(s)	1401, 1540, 1581, 2047, 9134
Van91I	CCANNNNNTGG	4 cut(s)	2495, 2996, 4073, 8117
Vha464I	CTTAAG	4 cut(s)	1087, 6929, 7676, 8972
VneI	GTGCAC	1 cut(s)	6830
XbaI	TCTAGA	1 cut(s)	3800
XhoI	CTCGAG	1 cut(s)	1759
XmiI	GTMKAC	5 cut(s)	1116, 3745, 6905, 8016, 8526
XmnI	GAANNNNTTC	3 cut(s)	3238, 3588, 8994
ZrmI	AGTACT	2 cut(s)	1085, 8994
Zsp2I	ATGCAT	7 cut(s)	2880, 2983, 2987, 6446, 7053, 8118, 9112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.