Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010514

Physical Location & Seq

Genomic Coordinates Reverse (-)

2862669 .. 2864708

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCATGTACCAATGAAAATGGCAGCCATGGATGGAAATTCGGGATTCGACCGAATGAAGGAAGTGAAAGAATTCGACGAGTCAAAGATTGGAGTAAGGGGCCTTTCCGACTCTGGCATCACTTCTATTCCTCGCTTCTTCATACACCCGCTTGACTCTCTTCCTTGTAATAACTTGAACTCTAGCACCAACACTACCTCCATCCCCTTACTCGACTTGGCCAACCTCAACTCCCCCACCCACCGTCCCAAAATTATCCGGCAAATCAAAGACGCCGCGTCGACGTGGGGATTCTTCCAAGTCATCAACCACGGCATACCACTAGCAATCCTTGATGAGACGATCCGAAGCATCACAGCCTTCCATGAACAACCGCACGAGATCAAAGCCAAACACTACAGACGCCAAGAGCACCATGGAGTCATGTACACTAGCAACAATGACTTGTACCGGAGTAAGGCTGCCTGTTGGCATGACTCGCTTCAGGTGTATATGGCACCAGAGGAGTTAAAGGTGGAGGAGGACATCCCAGATATATGTCGTAAGGAGATTATTGCATGGGATTTTCATGCATCCAAAGTAGCCGAGGCGTTATTTGAGCTGTTGGCCGAGGGGCTTGGTTTGGAAGCTGGGAAGTTCAAGGAGTTGGGTTTTATGAAAGCTAGGTTATTCTTGGGGCACTGCTATCCCTACTGTCCGCAACCCGATCTGACCGTGGGGATCAAATCTCATACTGATGCAGGTTTGACGGTGTTGCTGCAGAACCAGGTCGGAGGGTTGCAAGTGAAGCATGGGAGTGAGTGGGTGGATGTCAAGCCATTGCCTGGGGCATTGACTGTTAATATTGGCGACTTCATACAGATCATATCGAATGGGGAGTATCAAAGCGTAGAGCATCGAGTATTGGCAAACTCATCAAAGGAACCAAGAATCTCAGTCTTGAGTTTTAATAACGTGGGGGGTTGGAAAGAGTCGGATGAATTTGGGCCATTTCCAGAATTACTATCTGCAGAGAAACCAGCCCTTTATCGAGGATTCACCGTGCCAGAGTTCCATCAGAGCTTTTACAGCAAAGGGTTAGATGGCAAAAACATAGTAGAAAGAGTTACACTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

373

Amino Acids

41.69

Weight (kDa)

6.1

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	68 - 169	4.8e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	227 - 317	2.7e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05410 FvH4_5g35660 FvH4_6g19290
rosa_chinensis	RchiOBHm_Chr1g0342631 RchiOBHm_Chr3g0474401
rosa_laevigata	RLG00000023926 RLG00000029166
rosa_multiflora	Rmu_co8382017.1_g000001 Rmu_sc0000173.1_g000005 Rmu_ssc0000177.1_g000006
rosa_roxburghii	Rroxscaffold_4G00313130 Rroxscaffold_6G00407210
rosa_rugosa	Rorug01G0147000.1
rosa_samantha	Rh1AG165300 Rh1CG154000 Rh3AG191400 Rh3BG220600 Rh3CG215900 Rh3DG216300
rosa_wichuraiana	Rw1G013720 Rw3G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	731
AccB1I	GGYRCC	1 cut(s)	496
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	278
AciI	CCGC	4 cut(s)	149, 276, 374, 698
AclWI	GGATC	2 cut(s)	337, 728
AcoI	YGGCCR	2 cut(s)	219, 606
AcsI	RAATTY	3 cut(s)	37, 71, 980
AcuI	CTGAAG	1 cut(s)	467
AcyI	GRCGYC	2 cut(s)	273, 403
AfaI	GTAC	3 cut(s)	9, 428, 449
AfiI	CCNNNNNNNGG	3 cut(s)	58, 457, 824
AgsI	TTSAA	2 cut(s)	178, 640
AhdI	GACNNNNNGTC	1 cut(s)	277
AjiI	CACGTC	1 cut(s)	285
AjnI	CCWGG	2 cut(s)	765, 823
AluBI	AGCT	4 cut(s)	601, 629, 662, 1062
AluI	AGCT	4 cut(s)	601, 629, 662, 1062
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	337, 728
AoxI	GGCC	4 cut(s)	100, 219, 606, 986
ApeKI	GCWGC	3 cut(s)	23, 461, 757
ApoI	RAATTY	3 cut(s)	37, 71, 980
Asp700I	GAANNNNTTC	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	100, 986
AsuHPI	GGTGA	1 cut(s)	1030
BaeGI	GKGCMC	1 cut(s)	681
BalI	TGGCCA	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	496
BauI	CACGAG	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	3 cut(s)	35, 448, 744
BccI	CCATC	4 cut(s)	26, 209, 1062, 1076
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	2 cut(s)	767, 825
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	4 cut(s)	183, 323, 432, 663
BfmI	CTRYAG	3 cut(s)	397, 758, 1008
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	4 cut(s)	24, 276, 462, 758
BlsI	GCNGC	4 cut(s)	25, 277, 463, 759
Bme1390I	CCNGG	2 cut(s)	767, 825
BmeRI	GACNNNNNGTC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	100, 986
BmiI	GGNNCC	3 cut(s)	101, 498, 924
BmrFI	CCNGG	2 cut(s)	767, 825
BmsI	GCATC	5 cut(s)	126, 360, 581, 727, 904
BpuEI	CTTGAG	1 cut(s)	961
BsaHI	GRCGYC	2 cut(s)	273, 403
BsaJI	CCNNGG	7 cut(s)	27, 310, 415, 585, 609, 714, 824
BsaWI	WCCGGW	1 cut(s)	450
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 215, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 457, 824
Bse3DI	GCAATG	1 cut(s)	818
BseBI	CCWGG	2 cut(s)	767, 825
BseDI	CCNNGG	7 cut(s)	27, 310, 415, 585, 609, 714, 824
BseGI	GGATG	6 cut(s)	37, 201, 525, 572, 814, 982
BseLI	CCNNNNNNNGG	3 cut(s)	58, 457, 824
BseMI	GCAATG	1 cut(s)	818
BseMII	CTCAG	1 cut(s)	948
BseRI	GAGGAG	2 cut(s)	518, 533
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	3 cut(s)	35, 448, 744
BseYI	CCCAGC	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	4 cut(s)	102, 221, 608, 988
BshNI	GGYRCC	1 cut(s)	496
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	259, 451
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	58, 457, 824
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	4 cut(s)	102, 221, 608, 988
Bsp1286I	GDGCHC	2 cut(s)	414, 681
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	342, 381, 706, 720, 861
Bsp19I	CCATGG	2 cut(s)	27, 415
BspACI	CCGC	4 cut(s)	149, 276, 374, 698
BspANI	GGCC	4 cut(s)	102, 221, 608, 988
BspCNI	CTCAG	1 cut(s)	947
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	3 cut(s)	101, 498, 924
BspMAI	CTGCAG	2 cut(s)	762, 1012
BspMI	ACCTGC	1 cut(s)	731
BspPI	GGATC	2 cut(s)	337, 728
BspT107I	GGYRCC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	818
BsrGI	TGTACA	1 cut(s)	426
BssECI	CCNNGG	7 cut(s)	27, 310, 415, 585, 609, 714, 824
BssMI	GATC	5 cut(s)	342, 381, 706, 720, 861
BssNI	GRCGYC	2 cut(s)	273, 403
BssSI	CACGAG	1 cut(s)	377
BssT1I	CCWWGG	2 cut(s)	27, 415
Bst2BI	CACGAG	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	767, 825
Bst4CI	ACNGT	6 cut(s)	245, 695, 715, 751, 838, 1042
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	2 cut(s)	273, 403
BstAUI	TGTACA	1 cut(s)	426
BstDEI	CTNAG	1 cut(s)	934
BstDSI	CCRYGG	4 cut(s)	27, 310, 415, 714
BstF5I	GGATG	6 cut(s)	37, 201, 525, 572, 814, 982
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	5 cut(s)	345, 384, 709, 723, 864
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	5 cut(s)	342, 381, 706, 720, 861
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	3 cut(s)	478, 787, 1068
BstNI	CCWGG	2 cut(s)	767, 825
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	765, 823
BstSFI	CTRYAG	3 cut(s)	397, 758, 1008
BstSLI	GKGCMC	1 cut(s)	681
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	35, 448, 744
BsuRI	GGCC	4 cut(s)	102, 221, 608, 988
BtgI	CCRYGG	4 cut(s)	27, 310, 415, 714
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	6 cut(s)	37, 201, 525, 572, 814, 982
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
BveI	ACCTGC	1 cut(s)	731
Cfr13I	GGNCC	2 cut(s)	100, 986
CseI	GACGC	3 cut(s)	267, 281, 411
CsiI	ACCWGGT	1 cut(s)	765
Csp6I	GTAC	3 cut(s)	8, 427, 448
CviAII	CATG	9 cut(s)	5, 28, 365, 416, 424, 473, 558, 569, 791
CviQI	GTAC	3 cut(s)	8, 427, 448
DdeI	CTNAG	1 cut(s)	934
DpnI	GATC	5 cut(s)	344, 383, 708, 722, 863
DpnII	GATC	5 cut(s)	342, 381, 706, 720, 861
DriI	GACNNNNNGTC	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	219, 606
Eam1104I	CTCTTC	1 cut(s)	165
Eam1105I	GACNNNNNGTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	27, 415
Eco57I	CTGAAG	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	765, 823
EcoT14I	CCWWGG	2 cut(s)	27, 415
EcoT22I	ATGCAT	2 cut(s)	6, 574
ErhI	CCWWGG	2 cut(s)	27, 415
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	9 cut(s)	8, 31, 368, 419, 427, 476, 561, 572, 794
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	9 cut(s)	4, 27, 364, 415, 423, 472, 557, 568, 790
FauI	CCCGC	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	4 cut(s)	24, 276, 462, 758
FokI	GGATG	6 cut(s)	44, 188, 512, 559, 821, 989
Fsp4HI	GCNGC	4 cut(s)	24, 276, 462, 758
FspBI	CTAG	4 cut(s)	183, 323, 432, 663
GluI	GCNGC	4 cut(s)	24, 276, 462, 758
GsaI	CCCAGC	1 cut(s)	633
HaeIII	GGCC	4 cut(s)	102, 221, 608, 988
HapII	CCGG	2 cut(s)	259, 451
HgaI	GACGC	3 cut(s)	267, 281, 411
Hin1I	GRCGYC	2 cut(s)	273, 403
Hin1II	CATG	9 cut(s)	8, 31, 368, 419, 427, 476, 561, 572, 794
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HpaII	CCGG	2 cut(s)	259, 451
HphI	GGTGA	1 cut(s)	1030
Hpy166II	GTNNAC	2 cut(s)	282, 429
Hpy188I	TCNGA	6 cut(s)	109, 347, 711, 773, 976, 1059
Hpy188III	TCNNGA	3 cut(s)	42, 940, 995
Hpy8I	GTNNAC	2 cut(s)	282, 429
Hpy99I	CGWCG	3 cut(s)	80, 283, 286
HpyAV	CCTTC	2 cut(s)	52, 370
HpyCH4III	ACNGT	6 cut(s)	245, 695, 715, 751, 838, 1042
HpyCH4IV	ACGT	2 cut(s)	284, 954
HpyCH4V	TGCA	7 cut(s)	4, 557, 572, 740, 760, 781, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	478, 787, 1068
HpyF3I	CTNAG	1 cut(s)	934
HpySE526I	ACGT	2 cut(s)	284, 954
Hsp92I	GRCGYC	2 cut(s)	273, 403
Hsp92II	CATG	9 cut(s)	8, 31, 368, 419, 427, 476, 561, 572, 794
Kzo9I	GATC	5 cut(s)	342, 381, 706, 720, 861
Lsp1109I	GCAGC	3 cut(s)	35, 448, 744
LweI	GCATC	5 cut(s)	126, 360, 581, 727, 904
MabI	ACCWGGT	1 cut(s)	765
MaeI	CTAG	4 cut(s)	183, 323, 432, 663
MaeII	ACGT	2 cut(s)	284, 954
MaeIII	GTNAC	1 cut(s)	1105
MalI	GATC	5 cut(s)	344, 383, 708, 722, 863
MboI	GATC	5 cut(s)	342, 381, 706, 720, 861
MboII	GAAGA	3 cut(s)	130, 152, 286
MhlI	GDGCHC	2 cut(s)	414, 681
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	5 cut(s)	37, 71, 252, 980, 998
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	6 cut(s)	89, 104, 149, 429, 470, 980
MmeI	TCCRAC	4 cut(s)	132, 751, 944, 954
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	2 cut(s)	6, 574
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	3 cut(s)	509, 840, 948
MslI	CAYNNNNRTG	2 cut(s)	735, 795
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	2 cut(s)	259, 451
MspR9I	CCNGG	2 cut(s)	767, 825
MvaI	CCWGG	2 cut(s)	767, 825
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	478, 787, 1068
NcoI	CCATGG	2 cut(s)	27, 415
NdeII	GATC	5 cut(s)	342, 381, 706, 720, 861
NlaIII	CATG	9 cut(s)	8, 31, 368, 419, 427, 476, 561, 572, 794
NlaIV	GGNNCC	3 cut(s)	101, 498, 924
NmeAIII	GCCGAG	2 cut(s)	610, 634
NsiI	ATGCAT	2 cut(s)	6, 574
NspI	RCATGY	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	4 cut(s)	45, 291, 930, 1035
PflMI	CCANNNNNTGG	1 cut(s)	824
PkrI	GCNGC	4 cut(s)	25, 277, 463, 759
PleI	GAGTC	6 cut(s)	88, 104, 149, 428, 470, 979
PpsI	GAGTC	6 cut(s)	88, 104, 149, 428, 470, 979
Psp6I	CCWGG	2 cut(s)	765, 823
PspFI	CCCAGC	1 cut(s)	629
PspGI	CCWGG	2 cut(s)	765, 823
PspN4I	GGNNCC	3 cut(s)	101, 498, 924
PspPI	GGNCC	2 cut(s)	100, 986
PstI	CTGCAG	2 cut(s)	762, 1012
RsaI	GTAC	3 cut(s)	9, 428, 449
RsaNI	GTAC	3 cut(s)	8, 427, 448
RseI	CAYNNNNRTG	2 cut(s)	735, 795
SalI	GTCGAC	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	509, 840, 948
SatI	GCNGC	4 cut(s)	24, 276, 462, 758
Sau3AI	GATC	5 cut(s)	342, 381, 706, 720, 861
Sau96I	GGNCC	2 cut(s)	100, 986
SchI	GAGTC	6 cut(s)	89, 104, 149, 429, 470, 980
ScrFI	CCNGG	2 cut(s)	767, 825
SduI	GDGCHC	2 cut(s)	414, 681
SexAI	ACCWGGT	1 cut(s)	765
SfaNI	GCATC	5 cut(s)	126, 360, 581, 727, 904
SfcI	CTRYAG	3 cut(s)	397, 758, 1008
SgrDI	CGTCGACG	1 cut(s)	280
SmiMI	CAYNNNNRTG	2 cut(s)	735, 795
SmlI	CTYRAG	1 cut(s)	940
SmoI	CTYRAG	1 cut(s)	940
Sse9I	AATT	5 cut(s)	37, 71, 252, 980, 998
SsiI	CCGC	4 cut(s)	149, 276, 374, 698
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	4 cut(s)	183, 323, 432, 663
StyD4I	CCNGG	2 cut(s)	765, 823
StyI	CCWWGG	2 cut(s)	27, 415
TaaI	ACNGT	6 cut(s)	245, 695, 715, 751, 838, 1042
TaiI	ACGT	2 cut(s)	287, 957
TaqI	TCGA	7 cut(s)	48, 75, 213, 281, 869, 898, 1030
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	5 cut(s)	37, 71, 252, 980, 998
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	4 cut(s)	45, 291, 930, 1035
Tru1I	TTAA	3 cut(s)	509, 840, 948
Tru9I	TTAA	3 cut(s)	509, 840, 948
TscAI	CASTG	1 cut(s)	686
TseI	GCWGC	3 cut(s)	23, 461, 757
TspDTI	ATGAA	8 cut(s)	29, 71, 130, 381, 557, 671, 844, 993
TspRI	CASTG	1 cut(s)	686
Van91I	CCANNNNNTGG	1 cut(s)	824
XapI	RAATTY	3 cut(s)	37, 71, 980
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	4 cut(s)	183, 323, 432, 663
Zsp2I	ATGCAT	2 cut(s)	6, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.