Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010514

Physical Location & Seq

Genomic Coordinates Reverse (-)

30098229 .. 30101282

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCAGTTAATTGTGCTACTTCCAATTCCGAATATGATCGGCTCAAAGAAGTTAAAGAGTTCGACGAGTCAAAGATGGGAGTAAAGGGTCTTTCCGACTCTGGCATCACTTCTATTCCTCGCTTCTTCATACACCCACCTGAAACTCTTCCTTGTAATAACTTTAACTCTAGCACCAACACTACCTCCATCCCCCTACTCGACTTAGCCAACCTCAATTCCCCCATTCACCGTCCCAAAATCATTAGAAAAATCAAAGACGCCGCCGCCACGTGGGGATTCTTCCAAGTCATCAACCACGGGATACCGGCATCAGTCCTCGATGAGACAATCCGAAGCATCACAGCCTTCCATGAACAACCTCACGAGATCAAATCCAAACACTACAGACGCCAAGAGCACCACGGTGTCATGTACACTAGCAACAATGACTTGTACCGGAGTAAGGCGGCCACCTGGCATGATTCCCTTCAGGTGTTTACGGCACCGGAGGAGATGAAGGTGGAGGATGACATCCCAGAGGTTTGCCGTAAGGAGGTGATTGCATGGGATTTTCATGCAGCCAAAGTAGCCGCGGCATTATTTGAGTTGTTGGCTGAAGGTCTTGGTTTGGAACCTGGGAAGTTCAAGGAGTTGGGTTTTATGAAAGCTAGATTATTTTTGGGGCACTGTTATCCCTACTGTCCGCAACCAGATCTGACGGTGGGAATCAAATCTCATACTGATGCCGGTTTGACAGTGTTGCTGCAGAACCAGGTCGGAGGGTTGCAAGTGAAGCAAGGGAGTGAGTGGGTGGATGTTAAGCCCTTGCCTGGGGCATTGACTGTTAATATTGGTGACTTCATACAGATCATATCAAATGGGGAGTATCAAAGCGTGGAGCATCGAGTATTGGCAAATTCATTGAAGGAACCAAGAATCTCAGTATTGATTTTTAATAACTTGGGGGGTTGGAAAGAGTCGGATGAATTTGGGCCACTTCCAGAATTATTATCAACAGAGAAACCAGCCCTTTATCGACAATTCACTGTGCCAGAGTTTCTTCAAAGCTTTTATAGCAAAGGATTAGATGGCAAAAACATAGTAGAAAGAGTTACACTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

369

Amino Acids

41.24

Weight (kDa)

6.07

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	64 - 166	1.1e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	223 - 312	1.9e-27	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05410 FvH4_5g35660 FvH4_6g19290
rosa_chinensis	RchiOBHm_Chr1g0342631 RchiOBHm_Chr3g0474401
rosa_laevigata	RLG00000023926 RLG00000029166
rosa_multiflora	Rmu_co8382017.1_g000001 Rmu_sc0000173.1_g000005 Rmu_ssc0000177.1_g000006
rosa_roxburghii	Rroxscaffold_4G00313130 Rroxscaffold_6G00407210
rosa_rugosa	Rorug01G0147000.1
rosa_samantha	Rh1AG165300 Rh1CG154000 Rh3AG191400 Rh3BG220600 Rh3CG215900 Rh3DG216300
rosa_wichuraiana	Rw1G013720 Rw3G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	484
AccII	CGCG	1 cut(s)	575
AciI	CCGC	6 cut(s)	264, 267, 449, 573, 575, 686
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	2 cut(s)	898, 968
AcuI	CTGAAG	2 cut(s)	455, 618
AcvI	CACGTG	1 cut(s)	273
AcyI	GRCGYC	2 cut(s)	261, 391
AfaI	GTAC	2 cut(s)	416, 437
AfiI	CCNNNNNNNGG	5 cut(s)	273, 445, 535, 812, 813
AgsI	TTSAA	3 cut(s)	628, 907, 1046
AjnI	CCWGG	4 cut(s)	455, 616, 753, 811
AleI	CACNNNNGTG	1 cut(s)	405
AluBI	AGCT	2 cut(s)	650, 1050
AluI	AGCT	2 cut(s)	650, 1050
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	450, 974
ApeKI	GCWGC	2 cut(s)	560, 745
ApoI	RAATTY	2 cut(s)	898, 968
Asp700I	GAANNNNTTC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	974
AsuHPI	GGTGA	3 cut(s)	221, 550, 848
BaeGI	GKGCMC	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	484
BauI	CACGAG	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	572, 732
BccI	CCATC	3 cut(s)	70, 197, 1064
BceAI	ACGGC	2 cut(s)	498, 513
BciT130I	CCWGG	4 cut(s)	457, 618, 755, 813
BciVI	GTATCC	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	4 cut(s)	171, 420, 651, 1105
BfmI	CTRYAG	2 cut(s)	385, 746
BfuI	GTATCC	1 cut(s)	297
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	7 cut(s)	264, 267, 450, 561, 573, 576, 746
BlsI	GCNGC	7 cut(s)	265, 268, 451, 562, 574, 577, 747
Bme1390I	CCNGG	4 cut(s)	457, 618, 755, 813
BmgT120I	GGNCC	1 cut(s)	974
BmiI	GGNNCC	3 cut(s)	486, 615, 912
BmrFI	CCNGG	4 cut(s)	457, 618, 755, 813
BmsI	GCATC	5 cut(s)	114, 320, 348, 715, 892
BsaAI	YACGTR	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	261, 391
BsaJI	CCNNGG	5 cut(s)	298, 403, 573, 617, 812
BsaWI	WCCGGW	2 cut(s)	438, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	5 cut(s)	273, 445, 535, 812, 813
Bse118I	RCCGGY	2 cut(s)	307, 728
BseBI	CCWGG	4 cut(s)	457, 618, 755, 813
BseDI	CCNNGG	5 cut(s)	298, 403, 573, 617, 812
BseGI	GGATG	5 cut(s)	189, 513, 514, 802, 970
BseLI	CCNNNNNNNGG	5 cut(s)	273, 445, 535, 812, 813
BseMII	CTCAG	1 cut(s)	936
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	2 cut(s)	572, 732
Bsh1236I	CGCG	1 cut(s)	575
BshFI	GGCC	2 cut(s)	452, 976
BshNI	GGYRCC	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	4 cut(s)	308, 439, 488, 729
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	5 cut(s)	273, 445, 535, 812, 813
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	452, 976
Bsp1286I	GDGCHC	2 cut(s)	402, 669
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	37, 369, 694, 849
BspACI	CCGC	6 cut(s)	264, 267, 449, 573, 575, 686
BspANI	GGCC	2 cut(s)	452, 976
BspCNI	CTCAG	1 cut(s)	935
BspFNI	CGCG	1 cut(s)	575
BspLI	GGNNCC	3 cut(s)	486, 615, 912
BspMAI	CTGCAG	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	484
BsrFI	RCCGGY	2 cut(s)	307, 728
BsrGI	TGTACA	1 cut(s)	414
BssAI	RCCGGY	2 cut(s)	307, 728
BssECI	CCNNGG	5 cut(s)	298, 403, 573, 617, 812
BssMI	GATC	4 cut(s)	37, 369, 694, 849
BssNI	GRCGYC	2 cut(s)	261, 391
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	4 cut(s)	457, 618, 755, 813
Bst4CI	ACNGT	8 cut(s)	233, 407, 671, 683, 703, 739, 826, 1030
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	2 cut(s)	261, 391
BstAUI	TGTACA	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	205, 922
BstDSI	CCRYGG	3 cut(s)	298, 403, 573
BstF5I	GGATG	5 cut(s)	189, 513, 514, 802, 970
BstFNI	CGCG	1 cut(s)	575
BstKTI	GATC	4 cut(s)	40, 372, 697, 852
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	4 cut(s)	37, 369, 694, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 775, 1056
BstNI	CCWGG	4 cut(s)	457, 618, 755, 813
BstSCI	CCNGG	4 cut(s)	455, 616, 753, 811
BstSFI	CTRYAG	2 cut(s)	385, 746
BstSLI	GKGCMC	1 cut(s)	669
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	2 cut(s)	572, 732
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	452, 976
BtgI	CCRYGG	3 cut(s)	298, 403, 573
BtsCI	GGATG	5 cut(s)	189, 513, 514, 802, 970
BtsIMutI	CAGTG	3 cut(s)	667, 744, 1026
Cfr10I	RCCGGY	2 cut(s)	307, 728
Cfr13I	GGNCC	1 cut(s)	974
Cfr42I	CCGCGG	1 cut(s)	576
CseI	GACGC	2 cut(s)	269, 399
CsiI	ACCWGGT	1 cut(s)	753
Csp6I	GTAC	2 cut(s)	415, 436
CviAII	CATG	5 cut(s)	353, 412, 461, 546, 557
CviQI	GTAC	2 cut(s)	415, 436
DdeI	CTNAG	2 cut(s)	205, 922
DpnI	GATC	4 cut(s)	39, 371, 696, 851
DpnII	GATC	4 cut(s)	37, 369, 694, 849
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco57I	CTGAAG	2 cut(s)	455, 618
Eco72I	CACGTG	1 cut(s)	273
EcoRII	CCWGG	4 cut(s)	455, 616, 753, 811
FaeI	CATG	5 cut(s)	356, 415, 464, 549, 560
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	5 cut(s)	352, 411, 460, 545, 556
Fnu4HI	GCNGC	7 cut(s)	264, 267, 450, 561, 573, 576, 746
FokI	GGATG	5 cut(s)	176, 500, 521, 809, 977
Fsp4HI	GCNGC	7 cut(s)	264, 267, 450, 561, 573, 576, 746
FspBI	CTAG	4 cut(s)	171, 420, 651, 1105
GluI	GCNGC	7 cut(s)	264, 267, 450, 561, 573, 576, 746
HaeIII	GGCC	2 cut(s)	452, 976
HapII	CCGG	4 cut(s)	308, 439, 488, 729
HgaI	GACGC	2 cut(s)	269, 399
Hin1I	GRCGYC	2 cut(s)	261, 391
Hin1II	CATG	5 cut(s)	356, 415, 464, 549, 560
HindIII	AAGCTT	1 cut(s)	1048
HinfI	GANTC	7 cut(s)	68, 98, 279, 464, 708, 918, 959
HpaII	CCGG	4 cut(s)	308, 439, 488, 729
HphI	GGTGA	3 cut(s)	221, 550, 848
Hpy166II	GTNNAC	2 cut(s)	417, 480
Hpy188I	TCNGA	6 cut(s)	31, 97, 335, 699, 761, 964
Hpy188III	TCNNGA	2 cut(s)	365, 983
Hpy8I	GTNNAC	2 cut(s)	417, 480
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	5 cut(s)	358, 479, 493, 593, 901
HpyCH4III	ACNGT	8 cut(s)	233, 407, 671, 683, 703, 739, 826, 1030
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	4 cut(s)	545, 560, 748, 769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 775, 1056
HpyF3I	CTNAG	2 cut(s)	205, 922
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	2 cut(s)	261, 391
Hsp92II	CATG	5 cut(s)	356, 415, 464, 549, 560
KspI	CCGCGG	1 cut(s)	576
Kzo9I	GATC	4 cut(s)	37, 369, 694, 849
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	2 cut(s)	572, 732
LweI	GCATC	5 cut(s)	114, 320, 348, 715, 892
MabI	ACCWGGT	1 cut(s)	753
MaeI	CTAG	4 cut(s)	171, 420, 651, 1105
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	836, 1093
MalI	GATC	4 cut(s)	39, 371, 696, 851
MboI	GATC	4 cut(s)	37, 369, 694, 849
MboII	GAAGA	4 cut(s)	118, 140, 274, 1034
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	2 cut(s)	402, 669
MluCI	AATT	7 cut(s)	10, 25, 217, 898, 968, 986, 1022
MlyI	GAGTC	3 cut(s)	77, 92, 968
MmeI	TCCRAC	4 cut(s)	120, 739, 932, 942
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	6 cut(s)	9, 54, 165, 801, 828, 936
MslI	CAYNNNNRTG	2 cut(s)	405, 723
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	4 cut(s)	308, 439, 488, 729
MspR9I	CCNGG	4 cut(s)	457, 618, 755, 813
MvaI	CCWGG	4 cut(s)	457, 618, 755, 813
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	3 cut(s)	569, 775, 1056
NdeII	GATC	4 cut(s)	37, 369, 694, 849
NlaIII	CATG	5 cut(s)	356, 415, 464, 549, 560
NlaIV	GGNNCC	3 cut(s)	486, 615, 912
NmuCI	GTSAC	1 cut(s)	836
OliI	CACNNNNGTG	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	4 cut(s)	279, 464, 708, 918
PkrI	GCNGC	7 cut(s)	265, 268, 451, 562, 574, 577, 747
PleI	GAGTC	3 cut(s)	76, 92, 967
PmaCI	CACGTG	1 cut(s)	273
PmlI	CACGTG	1 cut(s)	273
PpsI	GAGTC	3 cut(s)	76, 92, 967
Ppu21I	YACGTR	1 cut(s)	273
Psp6I	CCWGG	4 cut(s)	455, 616, 753, 811
PspCI	CACGTG	1 cut(s)	273
PspGI	CCWGG	4 cut(s)	455, 616, 753, 811
PspN4I	GGNNCC	3 cut(s)	486, 615, 912
PspPI	GGNCC	1 cut(s)	974
PstI	CTGCAG	1 cut(s)	750
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	2 cut(s)	416, 437
RsaNI	GTAC	2 cut(s)	415, 436
RseI	CAYNNNNRTG	2 cut(s)	405, 723
SacII	CCGCGG	1 cut(s)	576
SaqAI	TTAA	6 cut(s)	9, 54, 165, 801, 828, 936
SatI	GCNGC	7 cut(s)	264, 267, 450, 561, 573, 576, 746
Sau3AI	GATC	4 cut(s)	37, 369, 694, 849
Sau96I	GGNCC	1 cut(s)	974
SchI	GAGTC	3 cut(s)	77, 92, 968
ScrFI	CCNGG	4 cut(s)	457, 618, 755, 813
SduI	GDGCHC	2 cut(s)	402, 669
SexAI	ACCWGGT	1 cut(s)	753
SfaNI	GCATC	5 cut(s)	114, 320, 348, 715, 892
SfcI	CTRYAG	2 cut(s)	385, 746
Sfr303I	CCGCGG	1 cut(s)	576
SgrBI	CCGCGG	1 cut(s)	576
SmiMI	CAYNNNNRTG	2 cut(s)	405, 723
Sse9I	AATT	7 cut(s)	10, 25, 217, 898, 968, 986, 1022
SsiI	CCGC	6 cut(s)	264, 267, 449, 573, 575, 686
SspI	AATATT	1 cut(s)	832
SspMI	CTAG	4 cut(s)	171, 420, 651, 1105
StyD4I	CCNGG	4 cut(s)	455, 616, 753, 811
TaaI	ACNGT	8 cut(s)	233, 407, 671, 683, 703, 739, 826, 1030
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	5 cut(s)	63, 201, 321, 886, 1018
TasI	AATT	7 cut(s)	10, 25, 217, 898, 968, 986, 1022
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	5 cut(s)	266, 269, 452, 575, 578
TfiI	GAWTC	4 cut(s)	279, 464, 708, 918
Tru1I	TTAA	6 cut(s)	9, 54, 165, 801, 828, 936
Tru9I	TTAA	6 cut(s)	9, 54, 165, 801, 828, 936
TscAI	CASTG	3 cut(s)	674, 744, 1033
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	2 cut(s)	560, 745
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	8 cut(s)	118, 369, 512, 545, 659, 832, 891, 981
TspRI	CASTG	3 cut(s)	674, 744, 1033
XapI	RAATTY	2 cut(s)	898, 968
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	4 cut(s)	171, 420, 651, 1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.