RchiOBHm_Chr1g0342631

1-aminocyclopropane-1-carboxylate oxidase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010514
Physical Location & Seq
Forward (+)
34481517 .. 34484403
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56925

Sequence Viewer

Length: 1107 bp
ATGGCAGTTAATTGTGCTACTTCCAATTCCCAATATGATCGGCTCAAAGAAGTTAAAGAGTTTGACGAATCAAAGATGGGAGTAAAGGGTCTTTCCGACTCTGGCATCACTTCTATTCCTCGCTTCTTCATACATCCACCAGAAACTCTTCCTTGTAATAACTTAAACTCTAGCACCAACACTACCTCCATCCCCCTACTCGACTTAGCCAACCTCAATTCCCCCACCCATCGTCCCCAAATCATCCAACAGATTAAAGATGCCGCCTCCACGTGGGGTTTCTTCCAAGTCATCAACCACGGTATACCAGCATCAGTCCTCGATGAGACGATCCAAAGCATCACAGCCTTCCATGAACAACCTCACGAGATCAAAGCCAAACACTACAGACGCCAAGAGCACCACGGTGTCATGTACACTAGCAACAATGACTTGTACCGGAGTAAAGCGGCCACGTGGCATGACTCCCTTCAGGTGTATACAGCACCGGAGGAGATGAAGGTGGAGGATGACATCCCAGGGGTTTGCCGTAAGGAGGTGATTGCATGGGATTTTCATGCAGTCAAAGTAGCCGAGGCATTATTTGAGTTGTTGGCTGAAGGTCTTGGTTTGGAAGCTGGGAAGTTCAAGGAGTTGGGTTTTATGAAAGCTAGATTATTTTTGGGTCACTGTTATCCCTACTGTCCGCAACCAGATCTGACGGTGGGAATCAAATCTCATACTGATGCCGGTTTGACAGTGTTGCTACAGAACCAGGTCGGAGGGTTGCAAGTGAAGCGAGGGAGTGAGTGGGTGGATGTTAAGCCCTTGCCTGGGGCATTGACTGTTAATATTGGTGACTTCATACAGATCATATCAAATGGGGAGTATCAAAGCGTGGAGCATCGAGTATTGGCAAACTCATCGAAGGAACCAAGAATCTCAGTATTGATTTTTAATAACTTGGGGGGTTGGAAAGAGTCGGATGAATTTGGGCCACTTCCAGAATTATTATCAGCAGAGAAACCAGCCCTTTATCGAGGATTCACTGTGCCAGAGTTCCTCCAAAGCTTTTATAGCAAAGAATTAGATGGCAAAAACATAGTAGAAAGAGTTACACTTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

368

Amino Acids

41.11

Weight (kDa)

5.79

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 64 - 166 1.4e-21 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 223 - 312 6e-28 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 304, 479
AciI CCGC 3 cut(s) 264, 449, 686
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 1 cut(s) 968
AcuI CTGAAG 2 cut(s) 455, 618
AcvI CACGTG 2 cut(s) 273, 456
AcyI GRCGYC 1 cut(s) 391
AfaI GTAC 2 cut(s) 416, 437
AfiI CCNNNNNNNGG 4 cut(s) 273, 535, 812, 813
AgsI TTSAA 1 cut(s) 628
AjnI CCWGG 3 cut(s) 517, 753, 811
AleI CACNNNNGTG 1 cut(s) 405
AluBI AGCT 3 cut(s) 617, 650, 1050
AluI AGCT 3 cut(s) 617, 650, 1050
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 1 cut(s) 325
AoxI GGCC 2 cut(s) 450, 974
ApoI RAATTY 1 cut(s) 968
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 974
AsuHPI GGTGA 2 cut(s) 550, 848
BauI CACGAG 1 cut(s) 365
BbrPI CACGTG 2 cut(s) 273, 456
Bbv12I GWGCWC 1 cut(s) 402
BccI CCATC 4 cut(s) 70, 197, 237, 1064
BceAI ACGGC 1 cut(s) 513
BcgI CGANNNNNNTGC 2 cut(s) 885, 919
BciT130I CCWGG 3 cut(s) 519, 755, 813
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 3 cut(s) 171, 420, 651
BfmI CTRYAG 2 cut(s) 385, 746
BglII AGATCT 1 cut(s) 694
BisI GCNGC 2 cut(s) 264, 450
BlsI GCNGC 2 cut(s) 265, 451
Bme1390I CCNGG 3 cut(s) 519, 755, 813
BmgT120I GGNCC 1 cut(s) 974
BmiI GGNNCC 1 cut(s) 912
BmrFI CCNGG 3 cut(s) 519, 755, 813
BmsI GCATC 6 cut(s) 114, 250, 320, 348, 715, 892
BsaAI YACGTR 2 cut(s) 273, 456
BsaHI GRCGYC 1 cut(s) 391
BsaJI CCNNGG 6 cut(s) 298, 403, 517, 518, 573, 812
BsaWI WCCGGW 2 cut(s) 438, 487
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 4 cut(s) 273, 535, 812, 813
Bse118I RCCGGY 1 cut(s) 728
BseBI CCWGG 3 cut(s) 519, 755, 813
BseDI CCNNGG 6 cut(s) 298, 403, 517, 518, 573, 812
BseGI GGATG 7 cut(s) 133, 189, 243, 513, 514, 802, 970
BseLI CCNNNNNNNGG 4 cut(s) 273, 535, 812, 813
BseMII CTCAG 1 cut(s) 936
BseRI GAGGAG 1 cut(s) 506
BseYI CCCAGC 1 cut(s) 617
BshFI GGCC 2 cut(s) 452, 976
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 3 cut(s) 439, 488, 729
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 4 cut(s) 273, 535, 812, 813
BsmAI GTCTC 1 cut(s) 320
BsmBI CGTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 2 cut(s) 452, 976
Bsp1286I GDGCHC 1 cut(s) 402
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 5 cut(s) 37, 330, 369, 694, 849
BspACI CCGC 3 cut(s) 264, 449, 686
BspANI GGCC 2 cut(s) 452, 976
BspCNI CTCAG 1 cut(s) 935
BspLI GGNNCC 1 cut(s) 912
BspPI GGATC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 728
BsrGI TGTACA 1 cut(s) 414
BssAI RCCGGY 1 cut(s) 728
BssECI CCNNGG 6 cut(s) 298, 403, 517, 518, 573, 812
BssMI GATC 5 cut(s) 37, 330, 369, 694, 849
BssNAI GTATAC 2 cut(s) 305, 480
BssNI GRCGYC 1 cut(s) 391
BssSI CACGAG 1 cut(s) 365
Bst1107I GTATAC 2 cut(s) 305, 480
Bst2BI CACGAG 1 cut(s) 365
Bst2UI CCWGG 3 cut(s) 519, 755, 813
Bst4CI ACNGT 8 cut(s) 302, 407, 671, 683, 703, 739, 826, 1030
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 391
BstAUI TGTACA 1 cut(s) 414
BstBAI YACGTR 2 cut(s) 273, 456
BstDEI CTNAG 2 cut(s) 205, 922
BstDSI CCRYGG 2 cut(s) 298, 403
BstF5I GGATG 7 cut(s) 133, 189, 243, 513, 514, 802, 970
BstKTI GATC 5 cut(s) 40, 333, 372, 697, 852
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 5 cut(s) 37, 330, 369, 694, 849
BstMWI GCNNNNNNNGC 2 cut(s) 775, 1056
BstNI CCWGG 3 cut(s) 519, 755, 813
BstSCI CCNGG 3 cut(s) 517, 753, 811
BstSFI CTRYAG 2 cut(s) 385, 746
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BstZ17I GTATAC 2 cut(s) 305, 480
BsuRI GGCC 2 cut(s) 452, 976
BtgI CCRYGG 2 cut(s) 298, 403
BtsCI GGATG 7 cut(s) 133, 189, 243, 513, 514, 802, 970
BtsIMutI CAGTG 3 cut(s) 667, 744, 1026
Cfr10I RCCGGY 1 cut(s) 728
Cfr13I GGNCC 1 cut(s) 974
CseI GACGC 1 cut(s) 399
CsiI ACCWGGT 1 cut(s) 753
Csp6I GTAC 2 cut(s) 415, 436
CviAII CATG 5 cut(s) 353, 412, 461, 546, 557
CviQI GTAC 2 cut(s) 415, 436
DdeI CTNAG 2 cut(s) 205, 922
DpnI GATC 5 cut(s) 39, 332, 371, 696, 851
DpnII GATC 5 cut(s) 37, 330, 369, 694, 849
EaeI YGGCCR 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco57I CTGAAG 2 cut(s) 455, 618
Eco72I CACGTG 2 cut(s) 273, 456
EcoRII CCWGG 3 cut(s) 517, 753, 811
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 5 cut(s) 356, 415, 464, 549, 560
FaqI GGGAC 1 cut(s) 219
FatI CATG 5 cut(s) 352, 411, 460, 545, 556
FblI GTMKAC 2 cut(s) 304, 479
Fnu4HI GCNGC 2 cut(s) 264, 450
FokI GGATG 7 cut(s) 120, 176, 230, 500, 521, 809, 977
Fsp4HI GCNGC 2 cut(s) 264, 450
FspBI CTAG 3 cut(s) 171, 420, 651
GluI GCNGC 2 cut(s) 264, 450
GsaI CCCAGC 1 cut(s) 621
HaeIII GGCC 2 cut(s) 452, 976
HapII CCGG 3 cut(s) 439, 488, 729
HgaI GACGC 1 cut(s) 399
Hin1I GRCGYC 1 cut(s) 391
Hin1II CATG 5 cut(s) 356, 415, 464, 549, 560
HindIII AAGCTT 1 cut(s) 1048
HinfI GANTC 7 cut(s) 68, 98, 464, 708, 918, 959, 1023
HpaII CCGG 3 cut(s) 439, 488, 729
HphI GGTGA 2 cut(s) 550, 848
Hpy166II GTNNAC 3 cut(s) 305, 417, 480
Hpy188I TCNGA 4 cut(s) 97, 699, 761, 964
Hpy188III TCNNGA 2 cut(s) 365, 983
Hpy8I GTNNAC 3 cut(s) 305, 417, 480
HpyAV CCTTC 5 cut(s) 358, 479, 493, 593, 901
HpyCH4III ACNGT 8 cut(s) 302, 407, 671, 683, 703, 739, 826, 1030
HpyCH4IV ACGT 2 cut(s) 272, 455
HpyCH4V TGCA 3 cut(s) 545, 560, 769
HpyF10VI GCNNNNNNNGC 2 cut(s) 775, 1056
HpyF3I CTNAG 2 cut(s) 205, 922
HpySE526I ACGT 2 cut(s) 272, 455
Hsp92I GRCGYC 1 cut(s) 391
Hsp92II CATG 5 cut(s) 356, 415, 464, 549, 560
Kzo9I GATC 5 cut(s) 37, 330, 369, 694, 849
LmnI GCTCC 1 cut(s) 880
LweI GCATC 6 cut(s) 114, 250, 320, 348, 715, 892
MabI ACCWGGT 1 cut(s) 753
MaeI CTAG 3 cut(s) 171, 420, 651
MaeII ACGT 2 cut(s) 272, 455
MaeIII GTNAC 3 cut(s) 665, 836, 1093
MalI GATC 5 cut(s) 39, 332, 371, 696, 851
MboI GATC 5 cut(s) 37, 330, 369, 694, 849
MboII GAAGA 3 cut(s) 118, 140, 274
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 6 cut(s) 10, 25, 217, 968, 986, 1064
MlyI GAGTC 3 cut(s) 92, 458, 968
MmeI TCCRAC 5 cut(s) 120, 271, 739, 932, 942
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 7 cut(s) 9, 54, 164, 255, 801, 828, 936
MslI CAYNNNNRTG 2 cut(s) 405, 723
MspI CCGG 3 cut(s) 439, 488, 729
MspR9I CCNGG 3 cut(s) 519, 755, 813
MvaI CCWGG 3 cut(s) 519, 755, 813
MwoI GCNNNNNNNGC 2 cut(s) 775, 1056
NdeII GATC 5 cut(s) 37, 330, 369, 694, 849
NlaIII CATG 5 cut(s) 356, 415, 464, 549, 560
NlaIV GGNNCC 1 cut(s) 912
NmeAIII GCCGAG 1 cut(s) 598
NmuCI GTSAC 2 cut(s) 665, 836
OliI CACNNNNGTG 1 cut(s) 405
PasI CCCWGGG 1 cut(s) 518
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 4 cut(s) 68, 708, 918, 1023
PkrI GCNGC 2 cut(s) 265, 451
PleI GAGTC 3 cut(s) 92, 458, 967
PmaCI CACGTG 2 cut(s) 273, 456
PmlI CACGTG 2 cut(s) 273, 456
PpsI GAGTC 3 cut(s) 92, 458, 967
Ppu21I YACGTR 2 cut(s) 273, 456
Psp6I CCWGG 3 cut(s) 517, 753, 811
PspCI CACGTG 2 cut(s) 273, 456
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 3 cut(s) 517, 753, 811
PspN4I GGNNCC 1 cut(s) 912
PspPI GGNCC 1 cut(s) 974
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 2 cut(s) 416, 437
RsaNI GTAC 2 cut(s) 415, 436
RseI CAYNNNNRTG 2 cut(s) 405, 723
SaqAI TTAA 7 cut(s) 9, 54, 164, 255, 801, 828, 936
SatI GCNGC 2 cut(s) 264, 450
Sau3AI GATC 5 cut(s) 37, 330, 369, 694, 849
Sau96I GGNCC 1 cut(s) 974
SchI GAGTC 3 cut(s) 92, 458, 968
ScrFI CCNGG 3 cut(s) 519, 755, 813
SduI GDGCHC 1 cut(s) 402
SexAI ACCWGGT 1 cut(s) 753
SfaNI GCATC 6 cut(s) 114, 250, 320, 348, 715, 892
SfcI CTRYAG 2 cut(s) 385, 746
SmiMI CAYNNNNRTG 2 cut(s) 405, 723
Sse9I AATT 6 cut(s) 10, 25, 217, 968, 986, 1064
SsiI CCGC 3 cut(s) 264, 449, 686
SspI AATATT 1 cut(s) 832
SspMI CTAG 3 cut(s) 171, 420, 651
StyD4I CCNGG 3 cut(s) 517, 753, 811
TaaI ACNGT 8 cut(s) 302, 407, 671, 683, 703, 739, 826, 1030
TaiI ACGT 2 cut(s) 275, 458
TaqI TCGA 5 cut(s) 201, 321, 886, 905, 1018
TasI AATT 6 cut(s) 10, 25, 217, 968, 986, 1064
TatI WGTACW 1 cut(s) 414
TauI GCSGC 2 cut(s) 266, 452
TfiI GAWTC 4 cut(s) 68, 708, 918, 1023
Tru1I TTAA 7 cut(s) 9, 54, 164, 255, 801, 828, 936
Tru9I TTAA 7 cut(s) 9, 54, 164, 255, 801, 828, 936
TscAI CASTG 3 cut(s) 674, 744, 1033
TseFI GTSAC 2 cut(s) 665, 836
Tsp45I GTSAC 2 cut(s) 665, 836
TspDTI ATGAA 7 cut(s) 118, 369, 512, 545, 659, 832, 981
TspRI CASTG 3 cut(s) 674, 744, 1033
XapI RAATTY 1 cut(s) 968
XmiI GTMKAC 2 cut(s) 304, 479
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 3 cut(s) 171, 420, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.