Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010514

Physical Location & Seq

Genomic Coordinates Forward (+)

19930064 .. 19933285

Gene Structure 3222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG216300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCAGTTAATTGTGCTGCTTCCAATTCCGAATACGATCGGCTCAAAGAAGTTAAAGAGTTCGACGAGTCAAAGATGGGAGTAAAGGGTCTTTCCGACTCTGGCATCACTTCTATTCCTCGCTTCTTCATACACCCACCTGAAACTCTTCCTTGTAATAACTTTAACTCTAGCACCAACACTACCTCCATCCCCCTACTCGACTTAGCCAACCTCAATTCCCCCACTCACCGTCCCAAAATCATTCGACAAATCAAAGACGCCGCCACCACGTGGGGATTCTTCCAAGTCATCAACCACGGGATACCGGCATCAGTCCTCGATGAGACAATCCGAAGCATCACAGCCTTCCATGAACAACCTCACGAGATCAAATCCAAACACTACAGACGCCAAGAGCACCACGGTGTCATGTACACTAGCAACAATGACTTGTACCGTAGTAAGGCGGCCACCTGGCATGATTCCCTTCAGGTGTTTACGGCACCGGAGGAGATGAAGGTGGAGGATGACATCCCAGAGGTTTGCCGTAAGGAGGTGATTGCATGGGATTTTCATGCAGCCAAAGTAGCCGCGGCATTATTTGAGTTGTTGGCTGAAGGTCTTGGTTTGGAACCTGGGAAGTTCAAGGAGTTGGGTTTTATGAAAGCTAGATTATTTTTGGGGCACTGTTATCCCTACTGTCCGCAACCAGATCTGACGGTGGGAATCAAATCTCATACTGATGCCGGTTTGACAGTGTTGCTGCAGAACCAGGTCGGAGGGTTGCAAGTGAAGCAAGGGAGTGAGTGGGTGGATGTTAAGCCCTTGCCTGGGGCATTGACTGTTAATATTGGTGACTTCATACAGATCATATCAAATAGGGAGTATCAAAGCGTGGAGCATCGAGTATTGGCAAATTCATCGAAGGAACCAAGAATCTCAATTAGCCTTGCTAGCAGAGTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

35.33

Weight (kDa)

6.5

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	64 - 166	7.5e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	223 - 310	3.2e-27	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05410 FvH4_5g35660 FvH4_6g19290
rosa_chinensis	RchiOBHm_Chr1g0342631 RchiOBHm_Chr3g0474401
rosa_laevigata	RLG00000023926 RLG00000029166
rosa_multiflora	Rmu_co8382017.1_g000001 Rmu_sc0000173.1_g000005 Rmu_ssc0000177.1_g000006
rosa_roxburghii	Rroxscaffold_4G00313130 Rroxscaffold_6G00407210
rosa_rugosa	Rorug01G0147000.1
rosa_samantha	Rh1AG165300 Rh1CG154000 Rh3AG191400 Rh3BG220600 Rh3CG215900 Rh3DG216300
rosa_wichuraiana	Rw1G013720 Rw3G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccII	CGCG	1 cut(s)	575
AciI	CCGC	5 cut(s)	264, 449, 573, 575, 686
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	898
AcuI	CTGAAG	2 cut(s)	455, 618
AcvI	CACGTG	1 cut(s)	273
AcyI	GRCGYC	2 cut(s)	261, 391
AdeI	CACNNNGTG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	416, 437
AfiI	CCNNNNNNNGG	5 cut(s)	273, 445, 535, 812, 813
AgsI	TTSAA	1 cut(s)	628
AjnI	CCWGG	4 cut(s)	455, 616, 753, 811
AleI	CACNNNNGTG	1 cut(s)	405
AluBI	AGCT	1 cut(s)	650
AluI	AGCT	1 cut(s)	650
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	3 cut(s)	17, 560, 745
ApoI	RAATTY	1 cut(s)	898
Asp700I	GAANNNNTTC	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	221, 550, 848
AsuNHI	GCTAGC	1 cut(s)	935
BaeGI	GKGCMC	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	484
BauI	CACGAG	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	4, 572, 732
BccI	CCATC	2 cut(s)	70, 197
BceAI	ACGGC	2 cut(s)	498, 513
BcgI	CGANNNNNNTGC	2 cut(s)	885, 919
BciT130I	CCWGG	4 cut(s)	457, 618, 755, 813
BciVI	GTATCC	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	4 cut(s)	171, 420, 651, 936
BfmI	CTRYAG	2 cut(s)	385, 746
BfuI	GTATCC	1 cut(s)	297
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	7 cut(s)	18, 264, 450, 561, 573, 576, 746
BlsI	GCNGC	7 cut(s)	19, 265, 451, 562, 574, 577, 747
Bme1390I	CCNGG	4 cut(s)	457, 618, 755, 813
BmiI	GGNNCC	3 cut(s)	486, 615, 912
BmrFI	CCNGG	4 cut(s)	457, 618, 755, 813
BmsI	GCATC	5 cut(s)	114, 320, 348, 715, 892
BmtI	GCTAGC	1 cut(s)	939
BsaAI	YACGTR	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	261, 391
BsaJI	CCNNGG	5 cut(s)	298, 403, 573, 617, 812
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	5 cut(s)	273, 445, 535, 812, 813
Bse118I	RCCGGY	2 cut(s)	307, 728
BseBI	CCWGG	4 cut(s)	457, 618, 755, 813
BseDI	CCNNGG	5 cut(s)	298, 403, 573, 617, 812
BseGI	GGATG	4 cut(s)	189, 513, 514, 802
BseLI	CCNNNNNNNGG	5 cut(s)	273, 445, 535, 812, 813
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	3 cut(s)	4, 572, 732
Bsh1236I	CGCG	1 cut(s)	575
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	452
BshNI	GGYRCC	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	3 cut(s)	308, 488, 729
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	5 cut(s)	273, 445, 535, 812, 813
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	402, 669
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	37, 369, 694, 849
BspACI	CCGC	5 cut(s)	264, 449, 573, 575, 686
BspANI	GGCC	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	575
BspLI	GGNNCC	3 cut(s)	486, 615, 912
BspMAI	CTGCAG	1 cut(s)	750
BspOI	GCTAGC	1 cut(s)	939
BspT107I	GGYRCC	1 cut(s)	484
BsrFI	RCCGGY	2 cut(s)	307, 728
BsrGI	TGTACA	1 cut(s)	414
BssAI	RCCGGY	2 cut(s)	307, 728
BssECI	CCNNGG	5 cut(s)	298, 403, 573, 617, 812
BssMI	GATC	4 cut(s)	37, 369, 694, 849
BssNI	GRCGYC	2 cut(s)	261, 391
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	4 cut(s)	457, 618, 755, 813
Bst4CI	ACNGT	8 cut(s)	233, 407, 440, 671, 683, 703, 739, 826
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	2 cut(s)	261, 391
BstAUI	TGTACA	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	937
BstDEI	CTNAG	1 cut(s)	205
BstDSI	CCRYGG	3 cut(s)	298, 403, 573
BstF5I	GGATG	4 cut(s)	189, 513, 514, 802
BstFNI	CGCG	1 cut(s)	575
BstKTI	GATC	4 cut(s)	40, 372, 697, 852
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	4 cut(s)	37, 369, 694, 849
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 775, 936
BstNI	CCWGG	4 cut(s)	457, 618, 755, 813
BstSCI	CCNGG	4 cut(s)	455, 616, 753, 811
BstSFI	CTRYAG	2 cut(s)	385, 746
BstSLI	GKGCMC	1 cut(s)	669
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	3 cut(s)	4, 572, 732
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	452
BtgI	CCRYGG	3 cut(s)	298, 403, 573
BtsCI	GGATG	4 cut(s)	189, 513, 514, 802
BtsIMutI	CAGTG	2 cut(s)	667, 744
Cac8I	GCNNGC	1 cut(s)	937
Cfr10I	RCCGGY	2 cut(s)	307, 728
Cfr42I	CCGCGG	1 cut(s)	576
CseI	GACGC	2 cut(s)	269, 399
CsiI	ACCWGGT	1 cut(s)	753
Csp6I	GTAC	2 cut(s)	415, 436
CviAII	CATG	5 cut(s)	353, 412, 461, 546, 557
CviQI	GTAC	2 cut(s)	415, 436
DdeI	CTNAG	1 cut(s)	205
DpnI	GATC	4 cut(s)	39, 371, 696, 851
DpnII	GATC	4 cut(s)	37, 369, 694, 849
DraIII	CACNNNGTG	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco57I	CTGAAG	2 cut(s)	455, 618
Eco72I	CACGTG	1 cut(s)	273
EcoRII	CCWGG	4 cut(s)	455, 616, 753, 811
FaeI	CATG	5 cut(s)	356, 415, 464, 549, 560
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	5 cut(s)	352, 411, 460, 545, 556
Fnu4HI	GCNGC	7 cut(s)	18, 264, 450, 561, 573, 576, 746
FokI	GGATG	4 cut(s)	176, 500, 521, 809
Fsp4HI	GCNGC	7 cut(s)	18, 264, 450, 561, 573, 576, 746
FspBI	CTAG	4 cut(s)	171, 420, 651, 936
GluI	GCNGC	7 cut(s)	18, 264, 450, 561, 573, 576, 746
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	3 cut(s)	308, 488, 729
HgaI	GACGC	2 cut(s)	269, 399
Hin1I	GRCGYC	2 cut(s)	261, 391
Hin1II	CATG	5 cut(s)	356, 415, 464, 549, 560
HinfI	GANTC	6 cut(s)	68, 98, 279, 464, 708, 918
HpaII	CCGG	3 cut(s)	308, 488, 729
HphI	GGTGA	3 cut(s)	221, 550, 848
Hpy166II	GTNNAC	2 cut(s)	417, 480
Hpy188I	TCNGA	5 cut(s)	31, 97, 335, 699, 761
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	417, 480
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	5 cut(s)	358, 479, 493, 593, 901
HpyCH4III	ACNGT	8 cut(s)	233, 407, 440, 671, 683, 703, 739, 826
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	4 cut(s)	545, 560, 748, 769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 775, 936
HpyF3I	CTNAG	1 cut(s)	205
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	2 cut(s)	261, 391
Hsp92II	CATG	5 cut(s)	356, 415, 464, 549, 560
KspI	CCGCGG	1 cut(s)	576
Kzo9I	GATC	4 cut(s)	37, 369, 694, 849
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	3 cut(s)	4, 572, 732
LweI	GCATC	5 cut(s)	114, 320, 348, 715, 892
MabI	ACCWGGT	1 cut(s)	753
MaeI	CTAG	4 cut(s)	171, 420, 651, 936
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	836
MalI	GATC	4 cut(s)	39, 371, 696, 851
MboI	GATC	4 cut(s)	37, 369, 694, 849
MboII	GAAGA	3 cut(s)	118, 140, 274
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	2 cut(s)	402, 669
MluCI	AATT	5 cut(s)	10, 25, 217, 898, 924
MlyI	GAGTC	2 cut(s)	77, 92
MmeI	TCCRAC	2 cut(s)	120, 739
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	5 cut(s)	9, 54, 165, 801, 828
MslI	CAYNNNNRTG	2 cut(s)	405, 723
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	3 cut(s)	308, 488, 729
MspR9I	CCNGG	4 cut(s)	457, 618, 755, 813
MvaI	CCWGG	4 cut(s)	457, 618, 755, 813
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	3 cut(s)	569, 775, 936
NdeII	GATC	4 cut(s)	37, 369, 694, 849
NheI	GCTAGC	1 cut(s)	935
NlaIII	CATG	5 cut(s)	356, 415, 464, 549, 560
NlaIV	GGNNCC	3 cut(s)	486, 615, 912
NmuCI	GTSAC	1 cut(s)	836
OliI	CACNNNNGTG	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	4 cut(s)	279, 464, 708, 918
PflMI	CCANNNNNTGG	1 cut(s)	273
PkrI	GCNGC	7 cut(s)	19, 265, 451, 562, 574, 577, 747
Ple19I	CGATCG	1 cut(s)	40
PleI	GAGTC	2 cut(s)	76, 92
PmaCI	CACGTG	1 cut(s)	273
PmlI	CACGTG	1 cut(s)	273
PpsI	GAGTC	2 cut(s)	76, 92
Ppu21I	YACGTR	1 cut(s)	273
Psp6I	CCWGG	4 cut(s)	455, 616, 753, 811
PspCI	CACGTG	1 cut(s)	273
PspGI	CCWGG	4 cut(s)	455, 616, 753, 811
PspN4I	GGNNCC	3 cut(s)	486, 615, 912
PstI	CTGCAG	1 cut(s)	750
PsuI	RGATCY	1 cut(s)	694
PvuI	CGATCG	1 cut(s)	40
RsaI	GTAC	2 cut(s)	416, 437
RsaNI	GTAC	2 cut(s)	415, 436
RseI	CAYNNNNRTG	2 cut(s)	405, 723
SacII	CCGCGG	1 cut(s)	576
SaqAI	TTAA	5 cut(s)	9, 54, 165, 801, 828
SatI	GCNGC	7 cut(s)	18, 264, 450, 561, 573, 576, 746
Sau3AI	GATC	4 cut(s)	37, 369, 694, 849
SchI	GAGTC	2 cut(s)	77, 92
ScrFI	CCNGG	4 cut(s)	457, 618, 755, 813
SduI	GDGCHC	2 cut(s)	402, 669
SexAI	ACCWGGT	1 cut(s)	753
SfaNI	GCATC	5 cut(s)	114, 320, 348, 715, 892
SfcI	CTRYAG	2 cut(s)	385, 746
Sfr303I	CCGCGG	1 cut(s)	576
SgrBI	CCGCGG	1 cut(s)	576
SmiMI	CAYNNNNRTG	2 cut(s)	405, 723
Sse9I	AATT	5 cut(s)	10, 25, 217, 898, 924
SsiI	CCGC	5 cut(s)	264, 449, 573, 575, 686
SspI	AATATT	1 cut(s)	832
SspMI	CTAG	4 cut(s)	171, 420, 651, 936
StyD4I	CCNGG	4 cut(s)	455, 616, 753, 811
TaaI	ACNGT	8 cut(s)	233, 407, 440, 671, 683, 703, 739, 826
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	6 cut(s)	63, 201, 247, 321, 886, 905
TasI	AATT	5 cut(s)	10, 25, 217, 898, 924
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	4 cut(s)	266, 452, 575, 578
TfiI	GAWTC	4 cut(s)	279, 464, 708, 918
Tru1I	TTAA	5 cut(s)	9, 54, 165, 801, 828
Tru9I	TTAA	5 cut(s)	9, 54, 165, 801, 828
TscAI	CASTG	2 cut(s)	674, 744
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	3 cut(s)	17, 560, 745
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	7 cut(s)	118, 369, 512, 545, 659, 832, 891
TspRI	CASTG	2 cut(s)	674, 744
Van91I	CCANNNNNTGG	1 cut(s)	273
XapI	RAATTY	1 cut(s)	898
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	4 cut(s)	171, 420, 651, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.