Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8382017.1

Orthogroup ID

OG0010514

Physical Location & Seq

Genomic Coordinates Forward (+)

264 .. 1172

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8382017.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 662 bp

atgggagtaaagggtctctccgactctggcatcacttctattcctcgcttcttcatacatccaccagaaactcttccttgtaataacttgaactctagcaccaacgctacctccatccccctactcgacttagccaacctcaattcccccacccatcgtccccaaatcatccaacagattaaagatgccgcctccacgtggggtttcttccaagtcatcaaccacggtataccagcatcagtcctcgatgagacgatccgaagcatcacagccttccatgaacaacctcacgagatcaaagccaaacactacagacgccaagagctccacggtgtcatgtacactagcaacaatgacttgtaccggagtaaagcggcctcgtggcatgactcccttcaggtgtatacagcaccggaggagatgaaggtggaggatgacatcccagaggtttgccgtaaggaggtgattgcatgggattttcatgcagtcaaagtagccgaggcattatttgagttgttggctgaaggtcttggtttggaagctgggaagttcaaggagttgggttttatgaaagctagattatttttgggtcactgttatccctactgtccgcaaccagatctgacggtgggaatcaaatctcatactgatgccggtttgac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

221

Amino Acids

24.68

Weight (kDa)

5.98

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05410 FvH4_5g35660 FvH4_6g19290
rosa_chinensis	RchiOBHm_Chr1g0342631 RchiOBHm_Chr3g0474401
rosa_laevigata	RLG00000023926 RLG00000029166
rosa_multiflora	Rmu_co8382017.1_g000001 Rmu_sc0000173.1_g000005 Rmu_ssc0000177.1_g000006
rosa_roxburghii	Rroxscaffold_4G00313130 Rroxscaffold_6G00407210
rosa_rugosa	Rorug01G0147000.1
rosa_samantha	Rh1AG165300 Rh1CG154000 Rh3AG191400 Rh3BG220600 Rh3CG215900 Rh3DG216300
rosa_wichuraiana	Rw1G013720 Rw3G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	229, 404
AciI	CCGC	3 cut(s)	189, 374, 611
AclWI	GGATC	1 cut(s)	250
AcuI	CTGAAG	2 cut(s)	380, 543
AcvI	CACGTG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	341, 362
AfiI	CCNNNNNNNGG	2 cut(s)	198, 460
AgsI	TTSAA	2 cut(s)	91, 553
AluBI	AGCT	3 cut(s)	325, 542, 575
AluI	AGCT	3 cut(s)	325, 542, 575
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	20, 245
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	2 cut(s)	290, 379
BbrPI	CACGTG	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	2 cut(s)	122, 162
BceAI	ACGGC	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	20, 245
BfaI	CTAG	3 cut(s)	96, 345, 576
BfmI	CTRYAG	1 cut(s)	310
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	2 cut(s)	189, 375
BlsI	GCNGC	2 cut(s)	190, 376
BmsI	GCATC	5 cut(s)	39, 175, 245, 273, 640
BsaAI	YACGTR	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	223, 328, 498
BsaWI	WCCGGW	2 cut(s)	363, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 460
Bse118I	RCCGGY	1 cut(s)	653
BseDI	CCNNGG	3 cut(s)	223, 328, 498
BseGI	GGATG	5 cut(s)	58, 114, 168, 438, 439
BseLI	CCNNNNNNNGG	2 cut(s)	198, 460
BseRI	GAGGAG	1 cut(s)	431
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	3 cut(s)	364, 413, 654
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	198, 460
BsmAI	GTCTC	2 cut(s)	20, 245
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	255, 294, 619
BspACI	CCGC	3 cut(s)	189, 374, 611
BspANI	GGCC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	653
BsrGI	TGTACA	1 cut(s)	339
BssAI	RCCGGY	1 cut(s)	653
BssECI	CCNNGG	3 cut(s)	223, 328, 498
BssMI	GATC	3 cut(s)	255, 294, 619
BssNAI	GTATAC	2 cut(s)	230, 405
BssNI	GRCGYC	1 cut(s)	316
BssSI	CACGAG	2 cut(s)	290, 379
Bst1107I	GTATAC	2 cut(s)	230, 405
Bst2BI	CACGAG	2 cut(s)	290, 379
Bst4CI	ACNGT	5 cut(s)	227, 332, 596, 608, 628
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	316
BstAUI	TGTACA	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	130
BstDSI	CCRYGG	2 cut(s)	223, 328
BstF5I	GGATG	5 cut(s)	58, 114, 168, 438, 439
BstKTI	GATC	3 cut(s)	258, 297, 622
BstMAI	GTCTC	2 cut(s)	20, 245
BstMBI	GATC	3 cut(s)	255, 294, 619
BstSFI	CTRYAG	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BstZ17I	GTATAC	2 cut(s)	230, 405
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	2 cut(s)	223, 328
BtsCI	GGATG	5 cut(s)	58, 114, 168, 438, 439
BtsIMutI	CAGTG	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	653
CseI	GACGC	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	340, 361
CviAII	CATG	5 cut(s)	278, 337, 386, 471, 482
CviJI	RGCY	9 cut(s)	134, 272, 302, 325, 377, 497, 521, 542, 575
CviKI_1	RGCY	9 cut(s)	134, 272, 302, 325, 377, 497, 521, 542, 575
CviQI	GTAC	2 cut(s)	340, 361
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	3 cut(s)	257, 296, 621
DpnII	GATC	3 cut(s)	255, 294, 619
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	380, 543
Eco72I	CACGTG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	5 cut(s)	281, 340, 389, 474, 485
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	5 cut(s)	277, 336, 385, 470, 481
FblI	GTMKAC	2 cut(s)	229, 404
Fnu4HI	GCNGC	2 cut(s)	189, 375
FokI	GGATG	5 cut(s)	45, 101, 155, 425, 446
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	189, 375
FspBI	CTAG	3 cut(s)	96, 345, 576
GluI	GCNGC	2 cut(s)	189, 375
GsaI	CCCAGC	1 cut(s)	546
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	3 cut(s)	364, 413, 654
HgaI	GACGC	1 cut(s)	324
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	5 cut(s)	281, 340, 389, 474, 485
HinfI	GANTC	3 cut(s)	23, 389, 633
HpaII	CCGG	3 cut(s)	364, 413, 654
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	3 cut(s)	230, 342, 405
Hpy188I	TCNGA	3 cut(s)	22, 260, 624
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	3 cut(s)	230, 342, 405
HpyAV	CCTTC	4 cut(s)	283, 404, 418, 518
HpyCH4III	ACNGT	5 cut(s)	227, 332, 596, 608, 628
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	470, 485
HpyF3I	CTNAG	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	5 cut(s)	281, 340, 389, 474, 485
Kzo9I	GATC	3 cut(s)	255, 294, 619
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	9 cut(s)	12, 78, 246, 377, 383, 426, 456, 528, 630
LweI	GCATC	5 cut(s)	39, 175, 245, 273, 640
MaeI	CTAG	3 cut(s)	96, 345, 576
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	3 cut(s)	257, 296, 621
MboI	GATC	3 cut(s)	255, 294, 619
MboII	GAAGA	3 cut(s)	43, 65, 199
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	2 cut(s)	17, 383
MmeI	TCCRAC	2 cut(s)	45, 196
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	648
MspI	CCGG	3 cut(s)	364, 413, 654
NdeII	GATC	3 cut(s)	255, 294, 619
NlaIII	CATG	5 cut(s)	281, 340, 389, 474, 485
NmeAIII	GCCGAG	1 cut(s)	523
NmuCI	GTSAC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	633
PkrI	GCNGC	2 cut(s)	190, 376
PleI	GAGTC	2 cut(s)	17, 383
PmaCI	CACGTG	1 cut(s)	198
PmlI	CACGTG	1 cut(s)	198
PpsI	GAGTC	2 cut(s)	17, 383
Ppu21I	YACGTR	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	327
PspCI	CACGTG	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	2 cut(s)	341, 362
RsaNI	GTAC	2 cut(s)	340, 361
RseI	CAYNNNNRTG	1 cut(s)	648
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	189, 375
Sau3AI	GATC	3 cut(s)	255, 294, 619
SchI	GAGTC	2 cut(s)	17, 383
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	5 cut(s)	39, 175, 245, 273, 640
SfcI	CTRYAG	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	648
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	3 cut(s)	189, 374, 611
SspMI	CTAG	3 cut(s)	96, 345, 576
SstI	GAGCTC	1 cut(s)	327
TaaI	ACNGT	5 cut(s)	227, 332, 596, 608, 628
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	126, 246
TasI	AATT	1 cut(s)	142
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	191, 377
TfiI	GAWTC	1 cut(s)	633
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	599
TseFI	GTSAC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	5 cut(s)	43, 294, 437, 470, 584
TspRI	CASTG	1 cut(s)	599
XmiI	GTMKAC	2 cut(s)	229, 404
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	3 cut(s)	96, 345, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.