Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010514

Physical Location & Seq

Genomic Coordinates Reverse (-)

26103533 .. 26105370

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCAGGTAATTGTGCTACTTCCAATTCCCAATATGATCGGCTCAAAGAACTTAAAGAGTTCGACGAATCAAAGATGGGAGTAAAGGGTCTCTCCGACTCTGGCATCACTTCTATTCCTCGCTTCTTCATACATCCACCCGAAACGTTACCTTGCAAGAACTTGAACTCTAGCACCAACGCTACCCCCTCCATCCCCCTCCTCGACTTGGCCAACCTCTACTCCCCCACCCACCGTCCTAAAATCATTCAACAGATCAAAGAGGCCGCGTCGACGTGGGGCTTCTTCCAAGTCATCAACCATGGTATACCAGCATCAATCCTTGATGAGACAATCGGAAGCATCACAGCCTTCCATGAACAACCGCACGAGATTAAAGCCAAACACTACAGACGACAAGAGCACCATGGAGTCATGTACACTAGCAACAATGACTTGTACCGGAGTAAGGCGGCCACCTGGCACGACTCCCTTCAGGTGTTTACGGCACCGGAGGAGATGAAGGTGGAGGAGGATATCCCAGAGATCTGTCGTAAGGAGGCCATTACATGGGACTTTCATGCATCCAAAGTAGCCGAGGCGTTATTTGAGTTGTTGGCCGAGGGACTTGGTTTGGAAGCTGGGAAGTTCAAGGAGTTGGGATTTATGAAAGCTAGGTTATTCTTGGGGCATTGCTATCCCTACTGTCCGCAACCAGATCTGACAGTGGGAATCAAATCTCACACTGATGCAGGTTTGACGGTTTTGCTGCAGAACCAGGTCGGAGGGTTGCAAGTGAAGCATGAGAATGAGTGGGTGGATGTCAAGCCATTGCCTGGGGCATTGACTGTTAATATTGGCGACTTCATACAGATCATATCGAACGGGGAGTATCAAAGCGTGGAGCATCGAGTATTGGCAAACTCATCAAAGGAACCAAGAATCTCAGTCCTGATTTTTAACAACTTGGGGGGTTGGAAAGAGTCGGATGAATTTGGGCCACTTCCAGAATTACTATCTGCAGAGAAACCAGCCCTTTATCGAGGATTCACTGTGCCAGAGTTCATTCAGAGCTTTTACAGCAAAGGGTTAGATGGCAAAAACATAGTAGAAAGAGTTACACTACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

370

Amino Acids

41.26

Weight (kDa)

5.85

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	65 - 167	3.6e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	224 - 313	5.7e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05410 FvH4_5g35660 FvH4_6g19290
rosa_chinensis	RchiOBHm_Chr1g0342631 RchiOBHm_Chr3g0474401
rosa_laevigata	RLG00000023926 RLG00000029166
rosa_multiflora	Rmu_co8382017.1_g000001 Rmu_sc0000173.1_g000005 Rmu_ssc0000177.1_g000006
rosa_roxburghii	Rroxscaffold_4G00313130 Rroxscaffold_6G00407210
rosa_rugosa	Rorug01G0147000.1
rosa_samantha	Rh1AG165300 Rh1CG154000 Rh3AG191400 Rh3BG220600 Rh3CG215900 Rh3DG216300
rosa_wichuraiana	Rw1G013720 Rw3G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	722
AccB1I	GGYRCC	1 cut(s)	487
AccB7I	CCANNNNNTGG	2 cut(s)	549, 815
AccI	GTMKAC	2 cut(s)	272, 307
AccII	CGCG	1 cut(s)	269
AciI	CCGC	4 cut(s)	267, 365, 452, 689
AclI	AACGTT	1 cut(s)	146
AcoI	YGGCCR	3 cut(s)	210, 453, 597
AcsI	RAATTY	1 cut(s)	971
AcuI	CTGAAG	1 cut(s)	458
AfaI	GTAC	2 cut(s)	419, 440
AfiI	CCNNNNNNNGG	4 cut(s)	208, 448, 549, 815
AgsI	TTSAA	3 cut(s)	166, 251, 631
AjiI	CACGTC	1 cut(s)	276
AjnI	CCWGG	3 cut(s)	458, 756, 814
AluBI	AGCT	3 cut(s)	620, 653, 1053
AluI	AGCT	3 cut(s)	620, 653, 1053
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	2 cut(s)	95, 323
AoxI	GGCC	6 cut(s)	210, 264, 453, 540, 597, 977
ApeKI	GCWGC	1 cut(s)	748
ApoI	RAATTY	1 cut(s)	971
AspS9I	GGNCC	1 cut(s)	977
BalI	TGGCCA	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	735
BccI	CCATC	3 cut(s)	70, 200, 1067
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	3 cut(s)	460, 758, 816
BcoDI	GTCTC	2 cut(s)	95, 323
BfaI	CTAG	3 cut(s)	171, 423, 654
BfmI	CTRYAG	3 cut(s)	388, 749, 999
BfuAI	ACCTGC	1 cut(s)	722
BglII	AGATCT	2 cut(s)	525, 697
BisI	GCNGC	3 cut(s)	267, 453, 749
BlsI	GCNGC	3 cut(s)	268, 454, 750
Bme1390I	CCNGG	3 cut(s)	460, 758, 816
BmgBI	CACGTC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	977
BmiI	GGNNCC	2 cut(s)	489, 915
BmrFI	CCNGG	3 cut(s)	460, 758, 816
BmsI	GCATC	6 cut(s)	114, 323, 351, 572, 718, 895
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	5 cut(s)	301, 406, 576, 600, 815
BsaWI	WCCGGW	2 cut(s)	441, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 448, 549, 815
Bse3DI	GCAATG	2 cut(s)	670, 809
BseBI	CCWGG	3 cut(s)	460, 758, 816
BseDI	CCNNGG	5 cut(s)	301, 406, 576, 600, 815
BseGI	GGATG	5 cut(s)	133, 192, 563, 805, 973
BseLI	CCNNNNNNNGG	4 cut(s)	208, 448, 549, 815
BseMI	GCAATG	2 cut(s)	670, 809
BseMII	CTCAG	1 cut(s)	939
BseRI	GAGGAG	3 cut(s)	191, 509, 524
BseXI	GCAGC	1 cut(s)	735
BseYI	CCCAGC	1 cut(s)	620
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	6 cut(s)	212, 266, 455, 542, 599, 979
BshNI	GGYRCC	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	2 cut(s)	442, 491
BslFI	GGGAC	2 cut(s)	566, 618
BslI	CCNNNNNNNGG	4 cut(s)	208, 448, 549, 815
BsmAI	GTCTC	2 cut(s)	95, 323
BsmFI	GGGAC	2 cut(s)	566, 618
BsnI	GGCC	6 cut(s)	212, 266, 455, 542, 599, 979
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	5 cut(s)	37, 255, 525, 697, 852
Bsp19I	CCATGG	2 cut(s)	301, 406
BspACI	CCGC	4 cut(s)	267, 365, 452, 689
BspANI	GGCC	6 cut(s)	212, 266, 455, 542, 599, 979
BspCNI	CTCAG	1 cut(s)	938
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	489, 915
BspMAI	CTGCAG	2 cut(s)	753, 1003
BspMI	ACCTGC	1 cut(s)	722
BspT107I	GGYRCC	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	670, 809
BsrGI	TGTACA	1 cut(s)	417
BssECI	CCNNGG	5 cut(s)	301, 406, 576, 600, 815
BssMI	GATC	5 cut(s)	37, 255, 525, 697, 852
BssNAI	GTATAC	1 cut(s)	308
BssSI	CACGAG	1 cut(s)	368
BssT1I	CCWWGG	2 cut(s)	301, 406
Bst1107I	GTATAC	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	3 cut(s)	460, 758, 816
Bst4CI	ACNGT	6 cut(s)	236, 686, 706, 742, 829, 1033
BstAUI	TGTACA	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	925
BstDSI	CCRYGG	2 cut(s)	301, 406
BstF5I	GGATG	5 cut(s)	133, 192, 563, 805, 973
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	5 cut(s)	40, 258, 528, 700, 855
BstMAI	GTCTC	2 cut(s)	95, 323
BstMBI	GATC	5 cut(s)	37, 255, 525, 697, 852
BstMWI	GCNNNNNNNGC	2 cut(s)	778, 1059
BstNI	CCWGG	3 cut(s)	460, 758, 816
BstSCI	CCNGG	3 cut(s)	458, 756, 814
BstSFI	CTRYAG	3 cut(s)	388, 749, 999
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	735
BstX2I	RGATCY	2 cut(s)	525, 697
BstYI	RGATCY	2 cut(s)	525, 697
BstZ17I	GTATAC	1 cut(s)	308
BsuRI	GGCC	6 cut(s)	212, 266, 455, 542, 599, 979
BtgI	CCRYGG	2 cut(s)	301, 406
BtrI	CACGTC	1 cut(s)	276
BtsCI	GGATG	5 cut(s)	133, 192, 563, 805, 973
BtsIMutI	CAGTG	3 cut(s)	711, 723, 1029
BveI	ACCTGC	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	977
CseI	GACGC	1 cut(s)	258
CsiI	ACCWGGT	1 cut(s)	756
Csp6I	GTAC	2 cut(s)	418, 439
CviAII	CATG	7 cut(s)	302, 356, 407, 415, 549, 560, 782
CviQI	GTAC	2 cut(s)	418, 439
DdeI	CTNAG	1 cut(s)	925
DpnI	GATC	5 cut(s)	39, 257, 527, 699, 854
DpnII	GATC	5 cut(s)	37, 255, 525, 697, 852
EaeI	YGGCCR	3 cut(s)	210, 453, 597
Eco130I	CCWWGG	2 cut(s)	301, 406
Eco31I	GGTCTC	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	458
EcoRII	CCWGG	3 cut(s)	458, 756, 814
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	301, 406
EcoT22I	ATGCAT	1 cut(s)	565
ErhI	CCWWGG	2 cut(s)	301, 406
FaeI	CATG	7 cut(s)	305, 359, 410, 418, 552, 563, 785
FaqI	GGGAC	2 cut(s)	566, 618
FatI	CATG	7 cut(s)	301, 355, 406, 414, 548, 559, 781
FblI	GTMKAC	2 cut(s)	272, 307
Fnu4HI	GCNGC	3 cut(s)	267, 453, 749
FokI	GGATG	5 cut(s)	120, 179, 550, 812, 980
Fsp4HI	GCNGC	3 cut(s)	267, 453, 749
FspBI	CTAG	3 cut(s)	171, 423, 654
GluI	GCNGC	3 cut(s)	267, 453, 749
GsaI	CCCAGC	1 cut(s)	624
HaeIII	GGCC	6 cut(s)	212, 266, 455, 542, 599, 979
HapII	CCGG	2 cut(s)	442, 491
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	7 cut(s)	305, 359, 410, 418, 552, 563, 785
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	8 cut(s)	68, 98, 411, 467, 711, 921, 962, 1026
HpaII	CCGG	2 cut(s)	442, 491
Hpy166II	GTNNAC	4 cut(s)	273, 308, 420, 483
Hpy188I	TCNGA	6 cut(s)	97, 338, 702, 764, 967, 1050
Hpy188III	TCNNGA	2 cut(s)	931, 986
Hpy8I	GTNNAC	4 cut(s)	273, 308, 420, 483
Hpy99I	CGWCG	3 cut(s)	68, 274, 277
HpyAV	CCTTC	3 cut(s)	361, 482, 496
HpyCH4III	ACNGT	6 cut(s)	236, 686, 706, 742, 829, 1033
HpyCH4IV	ACGT	2 cut(s)	146, 275
HpyCH4V	TGCA	6 cut(s)	156, 563, 731, 751, 772, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	778, 1059
HpyF3I	CTNAG	1 cut(s)	925
HpySE526I	ACGT	2 cut(s)	146, 275
Hsp92II	CATG	7 cut(s)	305, 359, 410, 418, 552, 563, 785
Kzo9I	GATC	5 cut(s)	37, 255, 525, 697, 852
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	1 cut(s)	735
LweI	GCATC	6 cut(s)	114, 323, 351, 572, 718, 895
MabI	ACCWGGT	1 cut(s)	756
MaeI	CTAG	3 cut(s)	171, 423, 654
MaeII	ACGT	2 cut(s)	146, 275
MaeIII	GTNAC	2 cut(s)	147, 1096
MalI	GATC	5 cut(s)	39, 257, 527, 699, 854
MboI	GATC	5 cut(s)	37, 255, 525, 697, 852
MboII	GAAGA	2 cut(s)	118, 277
MflI	RGATCY	2 cut(s)	525, 697
MhlI	GDGCHC	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	4 cut(s)	10, 25, 971, 989
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	4 cut(s)	92, 420, 461, 971
MmeI	TCCRAC	4 cut(s)	120, 742, 935, 945
Mox20I	TGGCCA	1 cut(s)	212
Mph1103I	ATGCAT	1 cut(s)	565
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	4 cut(s)	54, 375, 831, 939
MslI	CAYNNNNRTG	2 cut(s)	726, 786
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	2 cut(s)	442, 491
MspR9I	CCNGG	3 cut(s)	460, 758, 816
MvaI	CCWGG	3 cut(s)	460, 758, 816
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	778, 1059
NcoI	CCATGG	2 cut(s)	301, 406
NdeII	GATC	5 cut(s)	37, 255, 525, 697, 852
NlaIII	CATG	7 cut(s)	305, 359, 410, 418, 552, 563, 785
NlaIV	GGNNCC	2 cut(s)	489, 915
NmeAIII	GCCGAG	2 cut(s)	601, 625
NsiI	ATGCAT	1 cut(s)	565
PfeI	GAWTC	4 cut(s)	68, 711, 921, 1026
PflMI	CCANNNNNTGG	2 cut(s)	549, 815
PkrI	GCNGC	3 cut(s)	268, 454, 750
PleI	GAGTC	4 cut(s)	92, 419, 461, 970
PpsI	GAGTC	4 cut(s)	92, 419, 461, 970
Psp1406I	AACGTT	1 cut(s)	146
Psp6I	CCWGG	3 cut(s)	458, 756, 814
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	3 cut(s)	458, 756, 814
PspN4I	GGNNCC	2 cut(s)	489, 915
PspPI	GGNCC	1 cut(s)	977
PstI	CTGCAG	2 cut(s)	753, 1003
PsuI	RGATCY	2 cut(s)	525, 697
RsaI	GTAC	2 cut(s)	419, 440
RsaNI	GTAC	2 cut(s)	418, 439
RseI	CAYNNNNRTG	2 cut(s)	726, 786
SalI	GTCGAC	1 cut(s)	271
SaqAI	TTAA	4 cut(s)	54, 375, 831, 939
SatI	GCNGC	3 cut(s)	267, 453, 749
Sau3AI	GATC	5 cut(s)	37, 255, 525, 697, 852
Sau96I	GGNCC	1 cut(s)	977
SchI	GAGTC	4 cut(s)	92, 420, 461, 971
ScrFI	CCNGG	3 cut(s)	460, 758, 816
SduI	GDGCHC	1 cut(s)	405
SexAI	ACCWGGT	1 cut(s)	756
SfaNI	GCATC	6 cut(s)	114, 323, 351, 572, 718, 895
SfcI	CTRYAG	3 cut(s)	388, 749, 999
SgrDI	CGTCGACG	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	726, 786
Sse9I	AATT	4 cut(s)	10, 25, 971, 989
SsiI	CCGC	4 cut(s)	267, 365, 452, 689
SspI	AATATT	1 cut(s)	835
SspMI	CTAG	3 cut(s)	171, 423, 654
StyD4I	CCNGG	3 cut(s)	458, 756, 814
StyI	CCWWGG	2 cut(s)	301, 406
TaaI	ACNGT	6 cut(s)	236, 686, 706, 742, 829, 1033
TaiI	ACGT	2 cut(s)	149, 278
TaqI	TCGA	6 cut(s)	63, 204, 272, 860, 889, 1021
TasI	AATT	4 cut(s)	10, 25, 971, 989
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	2 cut(s)	269, 455
TfiI	GAWTC	4 cut(s)	68, 711, 921, 1026
Tru1I	TTAA	4 cut(s)	54, 375, 831, 939
Tru9I	TTAA	4 cut(s)	54, 375, 831, 939
TscAI	CASTG	3 cut(s)	711, 730, 1036
TseI	GCWGC	1 cut(s)	748
TspDTI	ATGAA	8 cut(s)	118, 372, 515, 548, 662, 835, 984, 1033
TspRI	CASTG	3 cut(s)	711, 730, 1036
Van91I	CCANNNNNTGG	2 cut(s)	549, 815
XapI	RAATTY	1 cut(s)	971
XmiI	GTMKAC	2 cut(s)	272, 307
XspI	CTAG	3 cut(s)	171, 423, 654
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.