Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010514

Physical Location & Seq

Genomic Coordinates Forward (+)

36349524 .. 36352151

Gene Structure 2628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCAGTTAATTGTGCTACTTCCAATTCCCAATATGATCGGCTCAAAGAAGTTAAAGAGTTTGACGAATCAAAGATGGGAGTAAAGGGTCTTTCCGACTCTGGCATCACTTCTATTCCTCGCTTCTTCATACATCCACCTGAAACTCTTCCTTGTAATAACTTAAACTCTAGCACCAACACTACCTCCATCCCCCTACTCGACTTAGCCAACCTCAATTCCCCCACCCATCGTCCCCAAATCATCCAACAGATTAAAGATGCCGCCGCCACGTGGGGTTTCTTCCAAGTCATCAACCACGGCATACCAGCATCAGTCCTAGATGAGACGATCCGAAGCATCACAGCCTTCCATGAACAACCTCACGAGATCAAAGCCAAACACTACAGACGCCAAGAGCACCACGGTGTCATGTACACTAGCAACAATGACTTGTACCGGAGTAAAGCGGCCACGTGGCATGACTCCCTTCAGGTGTTTACAGCACCGGAGGAGATGAAGGTGGAGGATGACATCCCAGAGGTTTGCCGTAAGGAGGTGATTGCATGGGATTTTCATGCAGTCAAAGTAGCCGAGGCATTATTTGAGTTGTTGGCTGAAGGTCTTGGTTTGGAAGCTGGGAAGTTCAAGGAGTTGGGTTTTATGAAAGCTAGATTATTTTTGGGTCACTGTTATCCCTACTGTCCGCAACCAGATCTGACGGTGGGAATCAAATCTCATACTGATGCCGGTTTGACGGTGTTGCTGCAGAACCAGGTCGGAGGGTTGCAAGTGAAGCGAGGGAGTGAGTGGGTGGATGTTAAGCCCTTGCCTGGGGCATTGACTGTTAATATTGGTGACTTCATACAGATCATATCAAATGGGGAGTATCAAAGCGTGGAGCATCGAGTATTGGCAAACTCATCGAAGGAACCAAGAATCTCAGTATTGATTTTTAATAACTTGGGGGTTGGAAAGAGTCGGATGAATTTGGGCCACTTCCAGAATTATTATCAGCAGAGAAACCAGCCCTTTATCGAGGATTCACTGTGCCAGAGTTCCTTAAAAGCTTTTATAGCAAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

355

Amino Acids

39.78

Weight (kDa)

6.27

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	64 - 166	5e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	223 - 312	5.6e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05410 FvH4_5g35660 FvH4_6g19290
rosa_chinensis	RchiOBHm_Chr1g0342631 RchiOBHm_Chr3g0474401
rosa_laevigata	RLG00000023926 RLG00000029166
rosa_multiflora	Rmu_co8382017.1_g000001 Rmu_sc0000173.1_g000005 Rmu_ssc0000177.1_g000006
rosa_roxburghii	Rroxscaffold_4G00313130 Rroxscaffold_6G00407210
rosa_rugosa	Rorug01G0147000.1
rosa_samantha	Rh1AG165300 Rh1CG154000 Rh3AG191400 Rh3BG220600 Rh3CG215900 Rh3DG216300
rosa_wichuraiana	Rw1G013720 Rw3G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	264, 267, 449, 686
AclWI	GGATC	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	967
AcuI	CTGAAG	2 cut(s)	455, 618
AcvI	CACGTG	2 cut(s)	273, 456
AcyI	GRCGYC	1 cut(s)	391
AfaI	GTAC	2 cut(s)	416, 437
AfiI	CCNNNNNNNGG	4 cut(s)	273, 535, 812, 813
AgsI	TTSAA	1 cut(s)	628
AjnI	CCWGG	2 cut(s)	753, 811
AleI	CACNNNNGTG	1 cut(s)	405
AluBI	AGCT	3 cut(s)	617, 650, 1049
AluI	AGCT	3 cut(s)	617, 650, 1049
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	2 cut(s)	450, 973
ApeKI	GCWGC	1 cut(s)	745
ApoI	RAATTY	1 cut(s)	967
Asp700I	GAANNNNTTC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	973
AsuHPI	GGTGA	2 cut(s)	550, 848
BauI	CACGAG	1 cut(s)	365
BbrPI	CACGTG	2 cut(s)	273, 456
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	732
BccI	CCATC	3 cut(s)	70, 197, 237
BceAI	ACGGC	2 cut(s)	316, 513
BcgI	CGANNNNNNTGC	2 cut(s)	885, 919
BciT130I	CCWGG	2 cut(s)	755, 813
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	4 cut(s)	171, 320, 420, 651
BfmI	CTRYAG	2 cut(s)	385, 746
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	4 cut(s)	264, 267, 450, 746
BlsI	GCNGC	4 cut(s)	265, 268, 451, 747
Bme1390I	CCNGG	2 cut(s)	755, 813
BmgT120I	GGNCC	1 cut(s)	973
BmiI	GGNNCC	1 cut(s)	912
BmrFI	CCNGG	2 cut(s)	755, 813
BmsI	GCATC	6 cut(s)	114, 250, 320, 348, 715, 892
BsaAI	YACGTR	2 cut(s)	273, 456
BsaHI	GRCGYC	1 cut(s)	391
BsaJI	CCNNGG	4 cut(s)	298, 403, 573, 812
BsaWI	WCCGGW	2 cut(s)	438, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	4 cut(s)	273, 535, 812, 813
Bse118I	RCCGGY	1 cut(s)	728
BseBI	CCWGG	2 cut(s)	755, 813
BseDI	CCNNGG	4 cut(s)	298, 403, 573, 812
BseGI	GGATG	7 cut(s)	133, 189, 243, 513, 514, 802, 969
BseLI	CCNNNNNNNGG	4 cut(s)	273, 535, 812, 813
BseMII	CTCAG	1 cut(s)	936
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	1 cut(s)	732
BseYI	CCCAGC	1 cut(s)	617
BshFI	GGCC	2 cut(s)	452, 975
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	3 cut(s)	439, 488, 729
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	4 cut(s)	273, 535, 812, 813
BsmAI	GTCTC	1 cut(s)	320
BsmBI	CGTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	452, 975
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	5 cut(s)	37, 330, 369, 694, 849
BspACI	CCGC	4 cut(s)	264, 267, 449, 686
BspANI	GGCC	2 cut(s)	452, 975
BspCNI	CTCAG	1 cut(s)	935
BspLI	GGNNCC	1 cut(s)	912
BspMAI	CTGCAG	1 cut(s)	750
BspPI	GGATC	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	728
BsrGI	TGTACA	1 cut(s)	414
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	4 cut(s)	298, 403, 573, 812
BssMI	GATC	5 cut(s)	37, 330, 369, 694, 849
BssNI	GRCGYC	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	2 cut(s)	755, 813
Bst4CI	ACNGT	7 cut(s)	407, 671, 683, 703, 739, 826, 1029
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	391
BstAUI	TGTACA	1 cut(s)	414
BstBAI	YACGTR	2 cut(s)	273, 456
BstDEI	CTNAG	2 cut(s)	205, 922
BstDSI	CCRYGG	2 cut(s)	298, 403
BstF5I	GGATG	7 cut(s)	133, 189, 243, 513, 514, 802, 969
BstKTI	GATC	5 cut(s)	40, 333, 372, 697, 852
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	5 cut(s)	37, 330, 369, 694, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	775, 1055
BstNI	CCWGG	2 cut(s)	755, 813
BstSCI	CCNGG	2 cut(s)	753, 811
BstSFI	CTRYAG	2 cut(s)	385, 746
BstV1I	GCAGC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	452, 975
BtgI	CCRYGG	2 cut(s)	298, 403
BtsCI	GGATG	7 cut(s)	133, 189, 243, 513, 514, 802, 969
BtsIMutI	CAGTG	2 cut(s)	667, 1025
Cfr10I	RCCGGY	1 cut(s)	728
Cfr13I	GGNCC	1 cut(s)	973
CseI	GACGC	1 cut(s)	399
CsiI	ACCWGGT	1 cut(s)	753
Csp6I	GTAC	2 cut(s)	415, 436
CviAII	CATG	5 cut(s)	353, 412, 461, 546, 557
CviQI	GTAC	2 cut(s)	415, 436
DdeI	CTNAG	2 cut(s)	205, 922
DpnI	GATC	5 cut(s)	39, 332, 371, 696, 851
DpnII	GATC	5 cut(s)	37, 330, 369, 694, 849
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco57I	CTGAAG	2 cut(s)	455, 618
Eco72I	CACGTG	2 cut(s)	273, 456
EcoRII	CCWGG	2 cut(s)	753, 811
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	5 cut(s)	356, 415, 464, 549, 560
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	5 cut(s)	352, 411, 460, 545, 556
Fnu4HI	GCNGC	4 cut(s)	264, 267, 450, 746
FokI	GGATG	7 cut(s)	120, 176, 230, 500, 521, 809, 976
Fsp4HI	GCNGC	4 cut(s)	264, 267, 450, 746
FspBI	CTAG	4 cut(s)	171, 320, 420, 651
GluI	GCNGC	4 cut(s)	264, 267, 450, 746
GsaI	CCCAGC	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	452, 975
HapII	CCGG	3 cut(s)	439, 488, 729
HgaI	GACGC	1 cut(s)	399
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	5 cut(s)	356, 415, 464, 549, 560
HindIII	AAGCTT	1 cut(s)	1047
HinfI	GANTC	7 cut(s)	68, 98, 464, 708, 918, 958, 1022
HpaII	CCGG	3 cut(s)	439, 488, 729
HphI	GGTGA	2 cut(s)	550, 848
Hpy166II	GTNNAC	2 cut(s)	417, 480
Hpy188I	TCNGA	5 cut(s)	97, 335, 699, 761, 963
Hpy188III	TCNNGA	2 cut(s)	365, 982
Hpy8I	GTNNAC	2 cut(s)	417, 480
HpyAV	CCTTC	5 cut(s)	358, 479, 493, 593, 901
HpyCH4III	ACNGT	7 cut(s)	407, 671, 683, 703, 739, 826, 1029
HpyCH4IV	ACGT	2 cut(s)	272, 455
HpyCH4V	TGCA	4 cut(s)	545, 560, 748, 769
HpyF10VI	GCNNNNNNNGC	2 cut(s)	775, 1055
HpyF3I	CTNAG	2 cut(s)	205, 922
HpySE526I	ACGT	2 cut(s)	272, 455
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	5 cut(s)	356, 415, 464, 549, 560
Kzo9I	GATC	5 cut(s)	37, 330, 369, 694, 849
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	1 cut(s)	732
LweI	GCATC	6 cut(s)	114, 250, 320, 348, 715, 892
MabI	ACCWGGT	1 cut(s)	753
MaeI	CTAG	4 cut(s)	171, 320, 420, 651
MaeII	ACGT	2 cut(s)	272, 455
MaeIII	GTNAC	2 cut(s)	665, 836
MalI	GATC	5 cut(s)	39, 332, 371, 696, 851
MboI	GATC	5 cut(s)	37, 330, 369, 694, 849
MboII	GAAGA	3 cut(s)	118, 140, 274
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	5 cut(s)	10, 25, 217, 967, 985
MlyI	GAGTC	3 cut(s)	92, 458, 967
MmeI	TCCRAC	5 cut(s)	120, 271, 739, 931, 941
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	8 cut(s)	9, 54, 164, 255, 801, 828, 936, 1043
MslI	CAYNNNNRTG	2 cut(s)	405, 723
MspI	CCGG	3 cut(s)	439, 488, 729
MspR9I	CCNGG	2 cut(s)	755, 813
MvaI	CCWGG	2 cut(s)	755, 813
MwoI	GCNNNNNNNGC	2 cut(s)	775, 1055
NdeII	GATC	5 cut(s)	37, 330, 369, 694, 849
NlaIII	CATG	5 cut(s)	356, 415, 464, 549, 560
NlaIV	GGNNCC	1 cut(s)	912
NmeAIII	GCCGAG	1 cut(s)	598
NmuCI	GTSAC	2 cut(s)	665, 836
OliI	CACNNNNGTG	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	4 cut(s)	68, 708, 918, 1022
PkrI	GCNGC	4 cut(s)	265, 268, 451, 747
PleI	GAGTC	3 cut(s)	92, 458, 966
PmaCI	CACGTG	2 cut(s)	273, 456
PmlI	CACGTG	2 cut(s)	273, 456
PpsI	GAGTC	3 cut(s)	92, 458, 966
Ppu21I	YACGTR	2 cut(s)	273, 456
Psp6I	CCWGG	2 cut(s)	753, 811
PspCI	CACGTG	2 cut(s)	273, 456
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	2 cut(s)	753, 811
PspN4I	GGNNCC	1 cut(s)	912
PspPI	GGNCC	1 cut(s)	973
PstI	CTGCAG	1 cut(s)	750
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	2 cut(s)	416, 437
RsaNI	GTAC	2 cut(s)	415, 436
RseI	CAYNNNNRTG	2 cut(s)	405, 723
SaqAI	TTAA	8 cut(s)	9, 54, 164, 255, 801, 828, 936, 1043
SatI	GCNGC	4 cut(s)	264, 267, 450, 746
Sau3AI	GATC	5 cut(s)	37, 330, 369, 694, 849
Sau96I	GGNCC	1 cut(s)	973
SchI	GAGTC	3 cut(s)	92, 458, 967
ScrFI	CCNGG	2 cut(s)	755, 813
SduI	GDGCHC	1 cut(s)	402
SexAI	ACCWGGT	1 cut(s)	753
SfaNI	GCATC	6 cut(s)	114, 250, 320, 348, 715, 892
SfcI	CTRYAG	2 cut(s)	385, 746
SmiMI	CAYNNNNRTG	2 cut(s)	405, 723
Sse9I	AATT	5 cut(s)	10, 25, 217, 967, 985
SsiI	CCGC	4 cut(s)	264, 267, 449, 686
SspI	AATATT	1 cut(s)	832
SspMI	CTAG	4 cut(s)	171, 320, 420, 651
StyD4I	CCNGG	2 cut(s)	753, 811
TaaI	ACNGT	7 cut(s)	407, 671, 683, 703, 739, 826, 1029
TaiI	ACGT	2 cut(s)	275, 458
TaqI	TCGA	4 cut(s)	201, 886, 905, 1017
TasI	AATT	5 cut(s)	10, 25, 217, 967, 985
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	3 cut(s)	266, 269, 452
TfiI	GAWTC	4 cut(s)	68, 708, 918, 1022
Tru1I	TTAA	8 cut(s)	9, 54, 164, 255, 801, 828, 936, 1043
Tru9I	TTAA	8 cut(s)	9, 54, 164, 255, 801, 828, 936, 1043
TscAI	CASTG	2 cut(s)	674, 1032
TseFI	GTSAC	2 cut(s)	665, 836
TseI	GCWGC	1 cut(s)	745
Tsp45I	GTSAC	2 cut(s)	665, 836
TspDTI	ATGAA	7 cut(s)	118, 369, 512, 545, 659, 832, 980
TspRI	CASTG	2 cut(s)	674, 1032
XapI	RAATTY	1 cut(s)	967
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	4 cut(s)	171, 320, 420, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.