Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000173.1

Orthogroup ID

OG0010514

Physical Location & Seq

Genomic Coordinates Forward (+)

22204 .. 23574

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000173.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atgggagtaaagggtctctccgactctggcatcacttctattcctcgcttcttcatacatccaccagaaactcttccttgtaataacttgaactctagcaccaacgctacctccatccccctactcgacttagccaacctcaattcccccacccatcgtccccaaatcatccaacagattaaagatgccgcctccacgtggggtttcttccaagtcatcaaccacggtataccagcatcagtcctcgatgagacgatccgaagcatcacagccttccatgaacaacctcacgagatcaaagccaaacactacagacgccaagagctccacggtgtcatgtacactagcaacaatgacttgtaccggagtaaagcggcctcgtggcatgactcccttcaggtgtatacagcaccggaggagatgaaggtggaggatgacatcccagaggtttgccgtaaggaggtgattgcatgggattttcatgcagtcaaagtagccgaggcattatttgagttgttggctgaaggtcttggtttggaagctgggaagttcaaggagttgggttttatgaaagctagattatttttgggtcactgttatccctactgtccgcaaccagatctgacggtgggaatcaaatctcatactgatgccggtttgacagtgttgctgcagaaccaggtcggagggttgcaagtgaagcgagggagtgagtgggtggatgttaagcccttgcctggggcattgactgttaatattggtgacttcatacagatcatatcaaatggggagtatcaaagcgtggagcatcgagtattggcaaactcatcgaaggaaccaagaatctcagtattgatttttaataacgtggggggttggaaagagtcggaagaatttgggccacttccagaattattatcagcagagaaaccagccctttatcgaggattcactgtgccagagttccttcaaagcttttttagcaaagaattagatggcaaaaacatagtagaaagagttacacttcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

343

Amino Acids

38.26

Weight (kDa)

5.82

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05410 FvH4_5g35660 FvH4_6g19290
rosa_chinensis	RchiOBHm_Chr1g0342631 RchiOBHm_Chr3g0474401
rosa_laevigata	RLG00000023926 RLG00000029166
rosa_multiflora	Rmu_co8382017.1_g000001 Rmu_sc0000173.1_g000005 Rmu_ssc0000177.1_g000006
rosa_roxburghii	Rroxscaffold_4G00313130 Rroxscaffold_6G00407210
rosa_rugosa	Rorug01G0147000.1
rosa_samantha	Rh1AG165300 Rh1CG154000 Rh3AG191400 Rh3BG220600 Rh3CG215900 Rh3DG216300
rosa_wichuraiana	Rw1G013720 Rw3G017460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	229, 404
AciI	CCGC	3 cut(s)	189, 374, 611
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	893
AcuI	CTGAAG	2 cut(s)	380, 543
AcvI	CACGTG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	341, 362
AfiI	CCNNNNNNNGG	4 cut(s)	198, 460, 737, 738
AgsI	TTSAA	3 cut(s)	91, 553, 971
AjnI	CCWGG	2 cut(s)	678, 736
AluBI	AGCT	4 cut(s)	325, 542, 575, 975
AluI	AGCT	4 cut(s)	325, 542, 575, 975
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	20, 245
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	2 cut(s)	375, 899
ApeKI	GCWGC	1 cut(s)	670
ApoI	RAATTY	1 cut(s)	893
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	899
AsuHPI	GGTGA	2 cut(s)	475, 773
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	2 cut(s)	290, 379
BbrPI	CACGTG	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	657
BccI	CCATC	3 cut(s)	122, 162, 989
BceAI	ACGGC	1 cut(s)	438
BcgI	CGANNNNNNTGC	2 cut(s)	810, 844
BciT130I	CCWGG	2 cut(s)	680, 738
BcoDI	GTCTC	2 cut(s)	20, 245
BfaI	CTAG	3 cut(s)	96, 345, 576
BfmI	CTRYAG	2 cut(s)	310, 671
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	3 cut(s)	189, 375, 671
BlsI	GCNGC	3 cut(s)	190, 376, 672
Bme1390I	CCNGG	2 cut(s)	680, 738
BmgT120I	GGNCC	1 cut(s)	899
BmiI	GGNNCC	1 cut(s)	837
BmrFI	CCNGG	2 cut(s)	680, 738
BmsI	GCATC	6 cut(s)	39, 175, 245, 273, 640, 817
BsaAI	YACGTR	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	4 cut(s)	223, 328, 498, 737
BsaWI	WCCGGW	2 cut(s)	363, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 460, 737, 738
Bse118I	RCCGGY	1 cut(s)	653
BseBI	CCWGG	2 cut(s)	680, 738
BseDI	CCNNGG	4 cut(s)	223, 328, 498, 737
BseGI	GGATG	6 cut(s)	58, 114, 168, 438, 439, 727
BseLI	CCNNNNNNNGG	4 cut(s)	198, 460, 737, 738
BseMII	CTCAG	1 cut(s)	861
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	657
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	2 cut(s)	377, 901
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	3 cut(s)	364, 413, 654
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	4 cut(s)	198, 460, 737, 738
BsmAI	GTCTC	2 cut(s)	20, 245
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	377, 901
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	4 cut(s)	255, 294, 619, 774
BspACI	CCGC	3 cut(s)	189, 374, 611
BspANI	GGCC	2 cut(s)	377, 901
BspCNI	CTCAG	1 cut(s)	860
BspLI	GGNNCC	1 cut(s)	837
BspMAI	CTGCAG	1 cut(s)	675
BspPI	GGATC	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	653
BsrGI	TGTACA	1 cut(s)	339
BssAI	RCCGGY	1 cut(s)	653
BssECI	CCNNGG	4 cut(s)	223, 328, 498, 737
BssMI	GATC	4 cut(s)	255, 294, 619, 774
BssNAI	GTATAC	2 cut(s)	230, 405
BssNI	GRCGYC	1 cut(s)	316
BssSI	CACGAG	2 cut(s)	290, 379
Bst1107I	GTATAC	2 cut(s)	230, 405
Bst2BI	CACGAG	2 cut(s)	290, 379
Bst2UI	CCWGG	2 cut(s)	680, 738
Bst4CI	ACNGT	8 cut(s)	227, 332, 596, 608, 628, 664, 751, 955
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	316
BstAUI	TGTACA	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	198
BstDEI	CTNAG	2 cut(s)	130, 847
BstDSI	CCRYGG	2 cut(s)	223, 328
BstF5I	GGATG	6 cut(s)	58, 114, 168, 438, 439, 727
BstKTI	GATC	4 cut(s)	258, 297, 622, 777
BstMAI	GTCTC	2 cut(s)	20, 245
BstMBI	GATC	4 cut(s)	255, 294, 619, 774
BstMWI	GCNNNNNNNGC	2 cut(s)	700, 981
BstNI	CCWGG	2 cut(s)	680, 738
BstSCI	CCNGG	2 cut(s)	678, 736
BstSFI	CTRYAG	2 cut(s)	310, 671
BstV1I	GCAGC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BstZ17I	GTATAC	2 cut(s)	230, 405
BsuRI	GGCC	2 cut(s)	377, 901
BtgI	CCRYGG	2 cut(s)	223, 328
BtsCI	GGATG	6 cut(s)	58, 114, 168, 438, 439, 727
BtsIMutI	CAGTG	3 cut(s)	592, 669, 951
Cfr10I	RCCGGY	1 cut(s)	653
Cfr13I	GGNCC	1 cut(s)	899
CseI	GACGC	1 cut(s)	324
CsiI	ACCWGGT	1 cut(s)	678
Csp6I	GTAC	2 cut(s)	340, 361
CviAII	CATG	5 cut(s)	278, 337, 386, 471, 482
CviQI	GTAC	2 cut(s)	340, 361
DdeI	CTNAG	2 cut(s)	130, 847
DpnI	GATC	4 cut(s)	257, 296, 621, 776
DpnII	GATC	4 cut(s)	255, 294, 619, 774
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	380, 543
Eco72I	CACGTG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	678, 736
EcoT38I	GRGCYC	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	5 cut(s)	281, 340, 389, 474, 485
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	5 cut(s)	277, 336, 385, 470, 481
FblI	GTMKAC	2 cut(s)	229, 404
Fnu4HI	GCNGC	3 cut(s)	189, 375, 671
FokI	GGATG	6 cut(s)	45, 101, 155, 425, 446, 734
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	189, 375, 671
FspBI	CTAG	3 cut(s)	96, 345, 576
GluI	GCNGC	3 cut(s)	189, 375, 671
GsaI	CCCAGC	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	377, 901
HapII	CCGG	3 cut(s)	364, 413, 654
HgaI	GACGC	1 cut(s)	324
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	5 cut(s)	281, 340, 389, 474, 485
HindIII	AAGCTT	1 cut(s)	973
HinfI	GANTC	6 cut(s)	23, 389, 633, 843, 884, 948
HpaII	CCGG	3 cut(s)	364, 413, 654
HphI	GGTGA	2 cut(s)	475, 773
Hpy166II	GTNNAC	3 cut(s)	230, 342, 405
Hpy188I	TCNGA	5 cut(s)	22, 260, 624, 686, 889
Hpy188III	TCNNGA	2 cut(s)	290, 908
Hpy8I	GTNNAC	3 cut(s)	230, 342, 405
HpyAV	CCTTC	6 cut(s)	283, 404, 418, 518, 826, 977
HpyCH4III	ACNGT	8 cut(s)	227, 332, 596, 608, 628, 664, 751, 955
HpyCH4IV	ACGT	2 cut(s)	197, 867
HpyCH4V	TGCA	4 cut(s)	470, 485, 673, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	700, 981
HpyF3I	CTNAG	2 cut(s)	130, 847
HpySE526I	ACGT	2 cut(s)	197, 867
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	5 cut(s)	281, 340, 389, 474, 485
Kzo9I	GATC	4 cut(s)	255, 294, 619, 774
LmnI	GCTCC	2 cut(s)	330, 805
Lsp1109I	GCAGC	1 cut(s)	657
LweI	GCATC	6 cut(s)	39, 175, 245, 273, 640, 817
MabI	ACCWGGT	1 cut(s)	678
MaeI	CTAG	3 cut(s)	96, 345, 576
MaeII	ACGT	2 cut(s)	197, 867
MaeIII	GTNAC	3 cut(s)	590, 761, 1018
MalI	GATC	4 cut(s)	257, 296, 621, 776
MboI	GATC	4 cut(s)	255, 294, 619, 774
MboII	GAAGA	4 cut(s)	43, 65, 199, 902
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	4 cut(s)	142, 893, 911, 989
MlyI	GAGTC	3 cut(s)	17, 383, 893
MmeI	TCCRAC	5 cut(s)	45, 196, 664, 857, 867
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	4 cut(s)	180, 726, 753, 861
MslI	CAYNNNNRTG	1 cut(s)	648
MspI	CCGG	3 cut(s)	364, 413, 654
MspR9I	CCNGG	2 cut(s)	680, 738
MvaI	CCWGG	2 cut(s)	680, 738
MwoI	GCNNNNNNNGC	2 cut(s)	700, 981
NdeII	GATC	4 cut(s)	255, 294, 619, 774
NlaIII	CATG	5 cut(s)	281, 340, 389, 474, 485
NlaIV	GGNNCC	1 cut(s)	837
NmeAIII	GCCGAG	1 cut(s)	523
NmuCI	GTSAC	2 cut(s)	590, 761
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	3 cut(s)	633, 843, 948
PkrI	GCNGC	3 cut(s)	190, 376, 672
PleI	GAGTC	3 cut(s)	17, 383, 892
PmaCI	CACGTG	1 cut(s)	198
PmlI	CACGTG	1 cut(s)	198
PpsI	GAGTC	3 cut(s)	17, 383, 892
Ppu21I	YACGTR	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	678, 736
PspCI	CACGTG	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	678, 736
PspN4I	GGNNCC	1 cut(s)	837
PspPI	GGNCC	1 cut(s)	899
PstI	CTGCAG	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	2 cut(s)	341, 362
RsaNI	GTAC	2 cut(s)	340, 361
RseI	CAYNNNNRTG	1 cut(s)	648
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	4 cut(s)	180, 726, 753, 861
SatI	GCNGC	3 cut(s)	189, 375, 671
Sau3AI	GATC	4 cut(s)	255, 294, 619, 774
Sau96I	GGNCC	1 cut(s)	899
SchI	GAGTC	3 cut(s)	17, 383, 893
ScrFI	CCNGG	2 cut(s)	680, 738
SduI	GDGCHC	1 cut(s)	327
SexAI	ACCWGGT	1 cut(s)	678
SfaNI	GCATC	6 cut(s)	39, 175, 245, 273, 640, 817
SfcI	CTRYAG	2 cut(s)	310, 671
SmiMI	CAYNNNNRTG	1 cut(s)	648
Sse9I	AATT	4 cut(s)	142, 893, 911, 989
SsiI	CCGC	3 cut(s)	189, 374, 611
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	3 cut(s)	96, 345, 576
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	678, 736
TaaI	ACNGT	8 cut(s)	227, 332, 596, 608, 628, 664, 751, 955
TaiI	ACGT	2 cut(s)	200, 870
TaqI	TCGA	5 cut(s)	126, 246, 811, 830, 943
TasI	AATT	4 cut(s)	142, 893, 911, 989
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	191, 377
TfiI	GAWTC	3 cut(s)	633, 843, 948
Tru1I	TTAA	4 cut(s)	180, 726, 753, 861
Tru9I	TTAA	4 cut(s)	180, 726, 753, 861
TscAI	CASTG	3 cut(s)	599, 669, 958
TseFI	GTSAC	2 cut(s)	590, 761
TseI	GCWGC	1 cut(s)	670
Tsp45I	GTSAC	2 cut(s)	590, 761
TspDTI	ATGAA	6 cut(s)	43, 294, 437, 470, 584, 757
TspRI	CASTG	3 cut(s)	599, 669, 958
XapI	RAATTY	1 cut(s)	893
XmiI	GTMKAC	2 cut(s)	229, 404
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	3 cut(s)	96, 345, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.