FvH4_1g07900

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013231
Physical Location & Seq
Reverse (-)
4175985 .. 4176365
381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07900.t1

Sequence Viewer

Length: 381 bp
ATGGACGATTTTCGATCCAAATCGTATGGACATGGAAGAATGGAGCTGGAGAGCTACTACGGAAATGGGTCCAATGGAGCTGGAGGACCCAACTCCTCGGCCGTTAATGGGATGCAAGATCTCAGATGCTACAGTACCTCGTATGCATGCCCACCAAAAACGCAGAACAATGAGAACAACAACATCAGCAAGTTCAAGAAGGGAAAGTCCGCAAATGGGTCGGTTTCGAAGAGCTGGAGCTTCAGTGATCCGGAGCTGCAGAGGAAGAAGAGGGTGGCTAGCTACAAGGTGTACACTGTGGAGGGGAAGCTGAAAGGGAGTTTGAGGAAGAGCTTCAGGTGGCTCAAGGAGACATGTGATAGAGTTGTCTATGGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

127

Amino Acids

14.14

Weight (kDa)

9.79

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 81 - 125 1.6e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 1 cut(s) 210
AclWI GGATC 2 cut(s) 9, 242
AcoI YGGCCR 2 cut(s) 99, 373
AcuI CTGAAG 2 cut(s) 226, 319
AfaI GTAC 2 cut(s) 136, 293
AfiI CCNNNNNNNGG 2 cut(s) 108, 216
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 9 cut(s) 46, 54, 80, 234, 240, 256, 282, 310, 333
AluI AGCT 9 cut(s) 46, 54, 80, 234, 240, 256, 282, 310, 333
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 2 cut(s) 9, 242
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 2 cut(s) 99, 373
ApeKI GCWGC 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 69, 86
AsuII TTCGAA 1 cut(s) 227
AsuNHI GCTAGC 1 cut(s) 278
AvaII GGWCC 2 cut(s) 69, 86
BbvI GCAGC 1 cut(s) 243
BceAI ACGGC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 2 cut(s) 130, 257
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme18I GGWCC 2 cut(s) 69, 86
BmgT120I GGNCC 2 cut(s) 69, 86
BmiI GGNNCC 2 cut(s) 70, 88
BmsI GCATC 2 cut(s) 102, 116
BmtI GCTAGC 1 cut(s) 282
BpmI CTGGAG 3 cut(s) 68, 102, 256
Bpu14I TTCGAA 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 216
Bse118I RCCGGY 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 108, 216
BseMII CTCAG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 85
BseX3I CGGCCG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 243
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 101, 375
BsiEI CGRYCG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 251, 376
BslI CCNNNNNNNGG 2 cut(s) 108, 216
BsmAI GTCTC 1 cut(s) 344
BsnI GGCC 2 cut(s) 101, 375
Bsp119I TTCGAA 1 cut(s) 227
Bsp13I TCCGGA 1 cut(s) 250
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 3 cut(s) 14, 118, 247
BspACI CCGC 1 cut(s) 210
BspANI GGCC 2 cut(s) 101, 375
BspCNI CTCAG 1 cut(s) 135
BspEI TCCGGA 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 70, 88
BspMAI CTGCAG 1 cut(s) 261
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 2 cut(s) 9, 242
BspQI GCTCTTC 2 cut(s) 224, 323
BspT104I TTCGAA 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 375
BsrGI TGTACA 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 14, 118, 247
Bst4CI ACNGT 2 cut(s) 134, 298
Bst6I CTCTTC 3 cut(s) 224, 263, 323
BstAUI TGTACA 1 cut(s) 291
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 148, 280
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 3 cut(s) 17, 121, 250
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 3 cut(s) 14, 118, 247
BstMCI CGRYCG 1 cut(s) 102
BstNSI RCATGY 2 cut(s) 150, 357
BstSFI CTRYAG 2 cut(s) 130, 257
BstV1I GCAGC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BstZI CGGCCG 1 cut(s) 99
BsuRI GGCC 2 cut(s) 101, 375
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 250, 294
Cac8I GCNNGC 2 cut(s) 148, 280
Cfr10I RCCGGY 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 69, 86
Csp6I GTAC 2 cut(s) 135, 292
CviAII CATG 3 cut(s) 32, 147, 354
CviQI GTAC 2 cut(s) 135, 292
DdeI CTNAG 1 cut(s) 122
DpnI GATC 3 cut(s) 16, 120, 249
DpnII GATC 3 cut(s) 14, 118, 247
EaeI YGGCCR 2 cut(s) 99, 373
EagI CGGCCG 1 cut(s) 99
Eam1104I CTCTTC 3 cut(s) 224, 263, 323
EarI CTCTTC 3 cut(s) 224, 263, 323
EclXI CGGCCG 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 69, 86
Eco52I CGGCCG 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 226, 319
EcoO109I RGGNCCY 1 cut(s) 86
EcoT22I ATGCAT 1 cut(s) 148
FaeI CATG 3 cut(s) 35, 150, 357
FaiI YATR 6 cut(s) 27, 33, 144, 148, 355, 372
FatI CATG 3 cut(s) 31, 146, 353
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 257
GsuI CTGGAG 3 cut(s) 68, 102, 256
HaeIII GGCC 2 cut(s) 101, 375
HapII CCGG 2 cut(s) 251, 376
Hin1II CATG 3 cut(s) 35, 150, 357
HpaII CCGG 2 cut(s) 251, 376
Hpy166II GTNNAC 2 cut(s) 292, 294
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 2 cut(s) 196, 251
Hpy8I GTNNAC 2 cut(s) 292, 294
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 134, 298
HpyCH4V TGCA 3 cut(s) 115, 146, 259
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 3 cut(s) 35, 150, 357
Kpn2I TCCGGA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 14, 118, 247
LguI GCTCTTC 2 cut(s) 224, 323
LmnI GCTCC 4 cut(s) 43, 77, 237, 253
LpnPI CCDG 5 cut(s) 32, 66, 220, 264, 322
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 2 cut(s) 102, 116
MaeI CTAG 1 cut(s) 279
MalI GATC 3 cut(s) 16, 120, 249
MboI GATC 3 cut(s) 14, 118, 247
MboII GAAGA 5 cut(s) 48, 241, 277, 280, 340
MflI RGATCY 1 cut(s) 118
MnlI CCTC 7 cut(s) 77, 106, 148, 255, 264, 295, 318
Mph1103I ATGCAT 1 cut(s) 148
MroI TCCGGA 1 cut(s) 250
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 1 cut(s) 105
MspI CCGG 2 cut(s) 251, 376
NdeII GATC 3 cut(s) 14, 118, 247
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 3 cut(s) 35, 150, 357
NlaIV GGNNCC 2 cut(s) 70, 88
NmeAIII GCCGAG 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 2 cut(s) 150, 357
NspV TTCGAA 1 cut(s) 227
PaeI GCATGC 1 cut(s) 150
PciI ACATGT 1 cut(s) 353
PciSI GCTCTTC 2 cut(s) 224, 323
PdmI GAANNNNTTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 258
PpuMI RGGWCCY 1 cut(s) 86
PscI ACATGT 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 70, 88
PspPI GGNCC 2 cut(s) 69, 86
PspPPI RGGWCCY 1 cut(s) 86
PstI CTGCAG 1 cut(s) 261
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 2 cut(s) 136, 293
RsaNI GTAC 2 cut(s) 135, 292
SapI GCTCTTC 2 cut(s) 224, 323
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 3 cut(s) 14, 118, 247
Sau96I GGNCC 2 cut(s) 69, 86
SfaNI GCATC 2 cut(s) 102, 116
SfcI CTRYAG 2 cut(s) 130, 257
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 2 cut(s) 69, 86
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SphI GCATGC 1 cut(s) 150
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 134, 298
TaqI TCGA 2 cut(s) 13, 227
TatI WGTACW 1 cut(s) 291
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 250, 301
TseI GCWGC 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 2 cut(s) 250, 301
VpaK11BI GGWCC 2 cut(s) 69, 86
XceI RCATGY 2 cut(s) 150, 357
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.