Rorug02G0039600

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013231
Physical Location & Seq
Forward (+)
3083007 .. 3090297
7291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0039600.1

Sequence Viewer

Length: 576 bp
ATGCCCTTGTTTGGTCTTCTTTCTATACCAAAATCCCTGTCATCTACTCCCCAACCAATCGAATCAAGGCAGACAGAGAGCTATCATGGTAGGCTTCAATCAATCAAACTGAGCGTGGAGGGTTCAGACTGCAGCGAGGCTGAGACAGCAGCAGCAGCAATGTGCATCGGTTTCTCTGACCCTATGGAAGCACGTGGGCTTGCACACTTTCTTCCACGCATGCTCTTCATAGGGAGTAAAAAGTTTCTGGTTGAAAATGAGCATCGGCATGCAGACATACTGGAAGGATATGCACTGAGCATCAAGGGAAGAGCATTAGAAAGGGGGTCTGTTAGCAGAATATCAGAAGAGATCAGAGACAAGAACTTCTCCCTCTTGCCACCTGTCCTGTCTTTCAAGATCAATTTTGCGATTCGAGGCCCAGGCTCTTCAATTGCTAGCTGCTTAAGGCATTTTAAGGTGTTTGATGTTTCCAAAAGCATGATGAATAATTTCTCGTGCGATGGTTTCTCTCTAGATTCGCTGGATGAAGTGGAATTTGAAGCACGCACTTCCCAAGTAACATCGGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

191

Amino Acids

20.97

Weight (kDa)

6.22

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 536
AcvI CACGTG 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 11
AflII CTTAAG 1 cut(s) 445
AgsI TTSAA 5 cut(s) 98, 254, 397, 432, 542
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 2 cut(s) 81, 441
AluI AGCT 2 cut(s) 81, 441
Alw26I GTCTC 2 cut(s) 137, 351
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 5 cut(s) 132, 149, 152, 155, 441
ApoI RAATTY 1 cut(s) 536
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
Asp700I GAANNNNTTC 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 419
AsuNHI GCTAGC 1 cut(s) 437
BauI CACGAG 1 cut(s) 496
BbrPI CACGTG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 8
BbvI GCAGC 5 cut(s) 144, 161, 164, 167, 428
BccI CCATC 1 cut(s) 497
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 137, 351
BfaI CTAG 2 cut(s) 438, 515
BfmI CTRYAG 1 cut(s) 130
BfrI CTTAAG 1 cut(s) 445
BisI GCNGC 5 cut(s) 133, 150, 153, 156, 442
BlsI GCNGC 5 cut(s) 134, 151, 154, 157, 443
Bme1390I CCNGG 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 419
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 174, 271, 309
BmtI GCTAGC 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 8
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 421
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 3 cut(s) 101, 132, 287
BseNI ACTGG 1 cut(s) 285
BseXI GCAGC 5 cut(s) 144, 161, 164, 167, 428
BshFI GGCC 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 11
BsmAI GTCTC 2 cut(s) 137, 351
BsnI GGCC 1 cut(s) 420
Bsp143I GATC 2 cut(s) 351, 399
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 3 cut(s) 102, 133, 288
BspMAI CTGCAG 1 cut(s) 134
BspOI GCTAGC 1 cut(s) 441
BspQI GCTCTTC 3 cut(s) 230, 304, 433
BspTI CTTAAG 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 2 cut(s) 351, 399
BssSI CACGAG 1 cut(s) 496
Bst2BI CACGAG 1 cut(s) 496
Bst2UI CCWGG 1 cut(s) 423
Bst6I CTCTTC 4 cut(s) 230, 304, 342, 433
BstAFI CTTAAG 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 5 cut(s) 201, 221, 270, 439, 547
BstDEI CTNAG 3 cut(s) 110, 141, 296
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 2 cut(s) 354, 402
BstMAI GTCTC 2 cut(s) 137, 351
BstMBI GATC 2 cut(s) 351, 399
BstMWI GCNNNNNNNGC 2 cut(s) 146, 155
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 2 cut(s) 223, 272
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 5 cut(s) 144, 161, 164, 167, 428
BstV2I GAAGAC 1 cut(s) 8
BsuRI GGCC 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 516
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 293
Cac8I GCNNGC 5 cut(s) 201, 221, 270, 439, 547
Cfr13I GGNCC 1 cut(s) 419
CviAII CATG 4 cut(s) 86, 220, 269, 481
CviJI RGCY 7 cut(s) 81, 94, 140, 199, 420, 426, 441
CviKI_1 RGCY 7 cut(s) 81, 94, 140, 199, 420, 426, 441
DdeI CTNAG 3 cut(s) 110, 141, 296
DpnI GATC 2 cut(s) 353, 401
DpnII GATC 2 cut(s) 351, 399
Eam1104I CTCTTC 4 cut(s) 230, 304, 342, 433
EarI CTCTTC 4 cut(s) 230, 304, 342, 433
Eco72I CACGTG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 421
FaeI CATG 4 cut(s) 89, 223, 272, 484
FatI CATG 4 cut(s) 85, 219, 268, 480
Fnu4HI GCNGC 5 cut(s) 133, 150, 153, 156, 442
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 5 cut(s) 133, 150, 153, 156, 442
FspBI CTAG 2 cut(s) 438, 515
GluI GCNGC 5 cut(s) 133, 150, 153, 156, 442
HaeIII GGCC 1 cut(s) 420
Hin1II CATG 4 cut(s) 89, 223, 272, 484
HinfI GANTC 3 cut(s) 62, 412, 518
Hpy188I TCNGA 4 cut(s) 127, 178, 346, 356
Hpy188III TCNNGA 3 cut(s) 397, 515, 567
HpyAV CCTTC 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 5 cut(s) 132, 165, 203, 272, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 155
HpyF3I CTNAG 3 cut(s) 110, 141, 296
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 4 cut(s) 89, 223, 272, 484
Kzo9I GATC 2 cut(s) 351, 399
LguI GCTCTTC 3 cut(s) 230, 304, 433
LmnI GCTCC 1 cut(s) 569
LpnPI CCDG 8 cut(s) 50, 233, 266, 396, 401, 408, 435, 509
Lsp1109I GCAGC 5 cut(s) 144, 161, 164, 167, 428
LweI GCATC 3 cut(s) 174, 271, 309
MaeI CTAG 2 cut(s) 438, 515
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 559
MalI GATC 2 cut(s) 353, 401
MboI GATC 2 cut(s) 351, 399
MboII GAAGA 6 cut(s) 8, 203, 217, 321, 359, 420
MfeI CAATTG 1 cut(s) 432
MluCI AATT 4 cut(s) 403, 432, 490, 536
MnlI CCTC 4 cut(s) 112, 130, 383, 410
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 2 cut(s) 446, 456
MslI CAYNNNNRTG 1 cut(s) 267
MspCI CTTAAG 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 146, 155
NdeII GATC 2 cut(s) 351, 399
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 4 cut(s) 89, 223, 272, 484
NspI RCATGY 2 cut(s) 223, 272
PaeI GCATGC 2 cut(s) 223, 272
PciSI GCTCTTC 3 cut(s) 230, 304, 433
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 3 cut(s) 62, 412, 518
PkrI GCNGC 5 cut(s) 134, 151, 154, 157, 443
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
Ppu21I YACGTR 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 421
PspCI CACGTG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 421
PspPI GGNCC 1 cut(s) 419
PstI CTGCAG 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 267
SapI GCTCTTC 3 cut(s) 230, 304, 433
SaqAI TTAA 2 cut(s) 446, 456
SatI GCNGC 5 cut(s) 133, 150, 153, 156, 442
Sau3AI GATC 2 cut(s) 351, 399
Sau96I GGNCC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 423
SetI ASST 5 cut(s) 83, 196, 385, 443, 462
SfaNI GCATC 3 cut(s) 174, 271, 309
SfcI CTRYAG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
SphI GCATGC 2 cut(s) 223, 272
Sse9I AATT 4 cut(s) 403, 432, 490, 536
SspMI CTAG 2 cut(s) 438, 515
StyD4I CCNGG 1 cut(s) 421
TaiI ACGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 60, 415
TasI AATT 4 cut(s) 403, 432, 490, 536
TfiI GAWTC 3 cut(s) 62, 412, 518
Tru1I TTAA 2 cut(s) 446, 456
Tru9I TTAA 2 cut(s) 446, 456
TscAI CASTG 1 cut(s) 300
TseI GCWGC 5 cut(s) 132, 149, 152, 155, 441
TspDTI ATGAA 3 cut(s) 217, 500, 543
TspRI CASTG 1 cut(s) 300
Vha464I CTTAAG 1 cut(s) 445
XapI RAATTY 1 cut(s) 536
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 2 cut(s) 223, 272
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 2 cut(s) 438, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.