Rmu_sc0012116.1_g000003

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012116.1
OG0013231
Physical Location & Seq
Forward (+)
10267 .. 10653
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012116.1_g000003.1.cds

Sequence Viewer

Length: 387 bp
atggacgattatcgatccaaatcgtacggacacggaagagtggagctggacagctactacggaactgggtccaatggagctggaggaggacccaattcctccgccattaatgggatgcaagatctcaggtgctacagcgcctcctatgcatgcccgccgaaaatgcgcaacaatgatgatagcaacaccaacaacaagttcaagaagggcaagtctgcaaatgggtcggtttcgaaaagctggagcttcagtgatccggagctgcagaggaagaagagggtggctagctacaaggtgtacactgtggaggggaagctgaaagggactctcaggaagagcttcaggtggctcaaggagacctgtgatagagtggtctatggccggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

128

Amino Acids

14.3

Weight (kDa)

9.76

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 2 cut(s) 102, 155
AclWI GGATC 2 cut(s) 9, 248
AcoI YGGCCR 1 cut(s) 379
AcuI CTGAAG 2 cut(s) 232, 325
AfaI GTAC 2 cut(s) 26, 299
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 9 cut(s) 46, 54, 80, 240, 246, 262, 288, 316, 339
AluI AGCT 9 cut(s) 46, 54, 80, 240, 246, 262, 288, 316, 339
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 2 cut(s) 9, 248
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 262
AseI ATTAAT 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 338
AspLEI GCGC 2 cut(s) 140, 168
AspS9I GGNCC 2 cut(s) 69, 89
AsuII TTCGAA 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 284
AvaII GGWCC 2 cut(s) 69, 89
BbvI GCAGC 1 cut(s) 249
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 2 cut(s) 133, 263
BfoI RGCGCY 1 cut(s) 141
BglII AGATCT 1 cut(s) 121
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 69, 89
BmgT120I GGNCC 2 cut(s) 69, 89
BmiI GGNNCC 2 cut(s) 70, 91
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 105
BmtI GCTAGC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 75
BpmI CTGGAG 2 cut(s) 102, 262
Bpu14I TTCGAA 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 335
Bsa29I ATCGAT 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 235, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 256
BseCI ATCGAT 1 cut(s) 13
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 139, 343
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 249
BshFI GGCC 1 cut(s) 381
BshVI ATCGAT 1 cut(s) 13
BsiSI CCGG 2 cut(s) 257, 382
BsiWI CGTACG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 1 cut(s) 381
Bso31I GGTCTC 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 233
Bsp13I TCCGGA 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 3 cut(s) 14, 121, 253
BspACI CCGC 2 cut(s) 102, 155
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 2 cut(s) 138, 342
BspDI ATCGAT 1 cut(s) 13
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 70, 91
BspMAI CTGCAG 1 cut(s) 267
BspOI GCTAGC 1 cut(s) 288
BspPI GGATC 2 cut(s) 9, 248
BspQI GCTCTTC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 381
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 381
BssMI GATC 3 cut(s) 14, 121, 253
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 3 cut(s) 31, 269, 329
BstAUI TGTACA 1 cut(s) 297
BstBI TTCGAA 1 cut(s) 233
BstC8I GCNNGC 3 cut(s) 151, 155, 286
BstDEI CTNAG 2 cut(s) 125, 329
BstF5I GGATG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 168
BstKTI GATC 3 cut(s) 17, 124, 256
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 3 cut(s) 14, 121, 253
BstMWI GCNNNNNNNGC 2 cut(s) 146, 163
BstNSI RCATGY 1 cut(s) 153
BstSFI CTRYAG 2 cut(s) 133, 263
BstV1I GCAGC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 13
BsuRI GGCC 1 cut(s) 381
BsuTUI ATCGAT 1 cut(s) 13
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 256, 300
Cac8I GCNNGC 3 cut(s) 151, 155, 286
CfoI GCGC 2 cut(s) 140, 168
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 2 cut(s) 69, 89
ClaI ATCGAT 1 cut(s) 13
Csp6I GTAC 2 cut(s) 25, 298
CviAII CATG 1 cut(s) 150
CviQI GTAC 2 cut(s) 25, 298
DdeI CTNAG 2 cut(s) 125, 329
DpnI GATC 3 cut(s) 16, 123, 255
DpnII GATC 3 cut(s) 14, 121, 253
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 3 cut(s) 31, 269, 329
EarI CTCTTC 3 cut(s) 31, 269, 329
EciI GGCGGA 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 69, 89
Eco57I CTGAAG 2 cut(s) 232, 325
EcoO109I RGGNCCY 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 151
FaeI CATG 1 cut(s) 153
FaiI YATR 3 cut(s) 147, 151, 378
FaqI GGGAC 1 cut(s) 337
FatI CATG 1 cut(s) 149
FauI CCCGC 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 285
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 2 cut(s) 139, 167
GluI GCNGC 1 cut(s) 263
GsuI CTGGAG 2 cut(s) 102, 262
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 1 cut(s) 381
HapII CCGG 2 cut(s) 257, 382
HhaI GCGC 2 cut(s) 140, 168
Hin1II CATG 1 cut(s) 153
Hin6I GCGC 2 cut(s) 138, 166
HinP1I GCGC 2 cut(s) 138, 166
HinfI GANTC 1 cut(s) 325
HpaII CCGG 2 cut(s) 257, 382
Hpy166II GTNNAC 2 cut(s) 298, 300
Hpy188III TCNNGA 3 cut(s) 202, 257, 331
Hpy8I GTNNAC 2 cut(s) 298, 300
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 4 cut(s) 118, 149, 218, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 163
HpyF3I CTNAG 2 cut(s) 125, 329
Hsp92II CATG 1 cut(s) 153
HspAI GCGC 2 cut(s) 138, 166
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 3 cut(s) 14, 121, 253
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 4 cut(s) 43, 77, 243, 259
LpnPI CCDG 9 cut(s) 32, 51, 66, 112, 226, 270, 316, 328, 373
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 285
MalI GATC 3 cut(s) 16, 123, 255
MboI GATC 3 cut(s) 14, 121, 253
MboII GAAGA 4 cut(s) 48, 283, 286, 346
MflI RGATCY 1 cut(s) 121
MluCI AATT 1 cut(s) 94
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 7 cut(s) 77, 80, 109, 151, 261, 270, 301
Mph1103I ATGCAT 1 cut(s) 151
MroI TCCGGA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 1 cut(s) 108
MspI CCGG 2 cut(s) 257, 382
MwoI GCNNNNNNNGC 2 cut(s) 146, 163
NdeII GATC 3 cut(s) 14, 121, 253
NheI GCTAGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 153
NlaIV GGNNCC 2 cut(s) 70, 91
NsbI TGCGCA 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 151
NspI RCATGY 1 cut(s) 153
NspV TTCGAA 1 cut(s) 233
PaeI GCATGC 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 338
Pfl23II CGTACG 1 cut(s) 24
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PpuMI RGGWCCY 1 cut(s) 89
PshBI ATTAAT 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 89
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 70, 91
PspPI GGNCC 2 cut(s) 69, 89
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 2 cut(s) 26, 299
RsaNI GTAC 2 cut(s) 25, 298
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 3 cut(s) 14, 121, 253
Sau96I GGNCC 2 cut(s) 69, 89
SchI GAGTC 1 cut(s) 319
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 2 cut(s) 133, 263
SfuI TTCGAA 1 cut(s) 233
SinI GGWCC 2 cut(s) 69, 89
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SphI GCATGC 1 cut(s) 153
Sse9I AATT 1 cut(s) 94
SsiI CCGC 2 cut(s) 102, 155
SspMI CTAG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 13, 233
TasI AATT 1 cut(s) 94
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 256, 307
TseI GCWGC 1 cut(s) 262
TspGWI ACGGA 3 cut(s) 42, 48, 75
TspRI CASTG 2 cut(s) 256, 307
VpaK11BI GGWCC 2 cut(s) 69, 89
VspI ATTAAT 1 cut(s) 108
XceI RCATGY 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.