Rroxscaffold_2G00147820

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013231
Physical Location & Seq
Forward (+)
85505544 .. 85507602
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147820.1

Sequence Viewer

Length: 432 bp
ATGGACGATTTTCGATCCAAATCGTATGGACACGGAAGAATGGAGCTGGACAGCTACTACGGAACTGGGTCCAAATCCAATGGAGCTGGAGGAGGGCCCAATTCCTCCGCCATTAATGGGATGCAAGATCTCAGGTGCTACAGCGCCTCCTATGCATGCCCACCAAAAACGCACAACAATGATAGCAACACCAACAAGTTCAAGAAGGGCAAGTCTGCAAATGGGTCGGTTTCGAAAAGCTGGAGCTTCACTGATCCGGAGCTGCAGAGGAAGAAGAGGGTGGCTAGCTACAAGGTGTACACTGTGGAGGGGAAGCTGAAAGGGACTCTCCGGAAGAGCTTCAGGTGGCTCAAGGAGACCTGTGATAGAGTGGTCTATGGCCGAATCATTATCAATGGGATTTCACTGTCTCAGAAATCGTCCCAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

143

Amino Acids

15.85

Weight (kDa)

9.88

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 83 - 127 4.8e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 256, 330
AciI CCGC 1 cut(s) 108
AclWI GGATC 2 cut(s) 9, 248
AcoI YGGCCR 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 325
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 9 cut(s) 46, 54, 86, 240, 246, 262, 288, 316, 339
AluI AGCT 9 cut(s) 46, 54, 86, 240, 246, 262, 288, 316, 339
Alw26I GTCTC 2 cut(s) 350, 414
AlwI GGATC 2 cut(s) 9, 248
Aor13HI TCCGGA 2 cut(s) 256, 330
AoxI GGCC 2 cut(s) 95, 379
ApaI GGGCCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 262
AseI ATTAAT 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 338
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 69, 95, 96
AsuII TTCGAA 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 69
BaeGI GKGCMC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 249
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BcoDI GTCTC 2 cut(s) 350, 414
BfaI CTAG 2 cut(s) 285, 430
BfmI CTRYAG 2 cut(s) 139, 263
BfoI RGCGCY 1 cut(s) 147
BglII AGATCT 1 cut(s) 127
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 3 cut(s) 69, 95, 96
BmiI GGNNCC 2 cut(s) 70, 97
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 111
BmtI GCTAGC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 75
BpmI CTGGAG 2 cut(s) 108, 262
Bpu14I TTCGAA 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 350
BsaWI WCCGGW 2 cut(s) 256, 330
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 2 cut(s) 256, 330
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 145, 425
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 1 cut(s) 249
BshFI GGCC 2 cut(s) 97, 381
BsiSI CCGG 2 cut(s) 257, 331
BslFI GGGAC 2 cut(s) 337, 406
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 2 cut(s) 350, 414
BsmFI GGGAC 2 cut(s) 337, 406
BsnI GGCC 2 cut(s) 97, 381
Bso31I GGTCTC 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 233
Bsp120I GGGCCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 99
Bsp13I TCCGGA 2 cut(s) 256, 330
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 3 cut(s) 14, 127, 253
BspACI CCGC 1 cut(s) 108
BspANI GGCC 2 cut(s) 97, 381
BspCNI CTCAG 2 cut(s) 144, 424
BspEI TCCGGA 2 cut(s) 256, 330
BspLI GGNNCC 2 cut(s) 70, 97
BspMAI CTGCAG 1 cut(s) 267
BspOI GCTAGC 1 cut(s) 288
BspPI GGATC 2 cut(s) 9, 248
BspQI GCTCTTC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 350
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 70
BssMI GATC 3 cut(s) 14, 127, 253
Bst4CI ACNGT 2 cut(s) 304, 408
Bst6I CTCTTC 2 cut(s) 269, 329
BstAUI TGTACA 1 cut(s) 297
BstBI TTCGAA 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 157, 286
BstDEI CTNAG 2 cut(s) 131, 411
BstF5I GGATG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 3 cut(s) 17, 130, 256
BstMAI GTCTC 2 cut(s) 350, 414
BstMBI GATC 3 cut(s) 14, 127, 253
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 159
BstSFI CTRYAG 2 cut(s) 139, 263
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 2 cut(s) 97, 381
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 3 cut(s) 249, 300, 404
Cac8I GCNNGC 2 cut(s) 157, 286
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 69, 95, 96
Csp6I GTAC 1 cut(s) 298
CviAII CATG 1 cut(s) 156
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 2 cut(s) 131, 411
DpnI GATC 3 cut(s) 16, 129, 255
DpnII GATC 3 cut(s) 14, 127, 253
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 2 cut(s) 269, 329
EarI CTCTTC 2 cut(s) 269, 329
EciI GGCGGA 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 99
FaeI CATG 1 cut(s) 159
FaiI YATR 4 cut(s) 27, 153, 157, 378
FaqI GGGAC 2 cut(s) 337, 406
FatI CATG 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 2 cut(s) 285, 430
GlaI GCGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 263
GsuI CTGGAG 2 cut(s) 108, 262
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 2 cut(s) 97, 381
HapII CCGG 2 cut(s) 257, 331
HhaI GCGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 159
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 2 cut(s) 325, 384
HpaII CCGG 2 cut(s) 257, 331
Hpy166II GTNNAC 2 cut(s) 298, 300
Hpy188I TCNGA 1 cut(s) 414
Hpy188III TCNNGA 3 cut(s) 202, 257, 331
Hpy8I GTNNAC 2 cut(s) 298, 300
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 2 cut(s) 304, 408
HpyCH4V TGCA 4 cut(s) 124, 155, 218, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 131, 411
Hsp92II CATG 1 cut(s) 159
HspAI GCGC 1 cut(s) 144
Kpn2I TCCGGA 2 cut(s) 256, 330
Kzo9I GATC 3 cut(s) 14, 127, 253
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 4 cut(s) 43, 83, 243, 259
LpnPI CCDG 9 cut(s) 32, 51, 72, 118, 226, 270, 328, 344, 373
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 1 cut(s) 111
MaeI CTAG 2 cut(s) 285, 430
MalI GATC 3 cut(s) 16, 129, 255
MboI GATC 3 cut(s) 14, 127, 253
MboII GAAGA 4 cut(s) 48, 283, 286, 346
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 100
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 7 cut(s) 83, 86, 115, 157, 261, 270, 301
Mph1103I ATGCAT 1 cut(s) 157
MroI TCCGGA 2 cut(s) 256, 330
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 2 cut(s) 257, 331
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 3 cut(s) 14, 127, 253
NheI GCTAGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 159
NlaIV GGNNCC 2 cut(s) 70, 97
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 1 cut(s) 159
NspV TTCGAA 1 cut(s) 233
PaeI GCATGC 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 384
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 70, 97
PspOMI GGGCCC 1 cut(s) 95
PspPI GGNCC 3 cut(s) 69, 95, 96
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 3 cut(s) 14, 127, 253
Sau96I GGNCC 3 cut(s) 69, 95, 96
SchI GAGTC 1 cut(s) 319
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 2 cut(s) 139, 263
SfuI TTCGAA 1 cut(s) 233
SinI GGWCC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SphI GCATGC 1 cut(s) 159
Sse9I AATT 1 cut(s) 100
SsiI CCGC 1 cut(s) 108
SspMI CTAG 2 cut(s) 285, 430
TaaI ACNGT 2 cut(s) 304, 408
TaqI TCGA 2 cut(s) 13, 233
TasI AATT 1 cut(s) 100
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 3 cut(s) 256, 307, 411
TseI GCWGC 1 cut(s) 262
TspGWI ACGGA 2 cut(s) 48, 75
TspRI CASTG 3 cut(s) 256, 307, 411
VpaK11BI GGWCC 1 cut(s) 69
VspI ATTAAT 1 cut(s) 114
XceI RCATGY 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 2 cut(s) 285, 430
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.