RLG00000016435

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013231
Physical Location & Seq
Reverse (-)
6632316 .. 6632696
381 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016435

Sequence Viewer

Length: 381 bp
ATGGACGAATTTCGATCCAAATCGTATGGACATGGAAGAATGGAGCTGGATAGCTACTACGGAACTGGGTCCAATGGAGCTGGAGGAGGACCCAATTCCTCCGGCATTAATGGGATGCAAGATCTCAGGTGCTACAGCGCCTCCTATGCATGCCCACCAAAAACGCACAACCACGATAGCAACACCAACAAGTTCAAGAAGGGCAAGTCTGCAAATGGGTCCGTTTCGAAAAGCTGGAGCTTTAGTGATCCGGAGCTGCAGAGGAAGAAGAGGGTGGCTAGCTACAAGGTGTACACTGTGGAGGGGAAGCTGAAAGGGACTCTCAGGAAGAGCTTCAGGTGGCTCAAGGAGACCTGTGATAGAGTGGTCTATGGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

127

Amino Acids

14.06

Weight (kDa)

9.79

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 81 - 125 3.3e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 250
AclWI GGATC 2 cut(s) 9, 242
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 319
AfaI GTAC 1 cut(s) 293
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 9 cut(s) 46, 54, 80, 234, 240, 256, 282, 310, 333
AluI AGCT 9 cut(s) 46, 54, 80, 234, 240, 256, 282, 310, 333
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 2 cut(s) 9, 242
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 1 cut(s) 373
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 8
AseI ATTAAT 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 3 cut(s) 69, 89, 219
AsuII TTCGAA 1 cut(s) 227
AsuNHI GCTAGC 1 cut(s) 278
AvaII GGWCC 3 cut(s) 69, 89, 219
BbvI GCAGC 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 2 cut(s) 133, 257
BfoI RGCGCY 1 cut(s) 141
BglII AGATCT 1 cut(s) 121
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme18I GGWCC 3 cut(s) 69, 89, 219
BmgT120I GGNCC 3 cut(s) 69, 89, 219
BmiI GGNNCC 3 cut(s) 70, 91, 220
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 105
BmtI GCTAGC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 75
BpmI CTGGAG 2 cut(s) 102, 256
Bpu14I TTCGAA 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 229, 259
Bse118I RCCGGY 1 cut(s) 375
Bse1I ACTGG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 250
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 19
BseMII CTCAG 2 cut(s) 139, 337
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 243
BshFI GGCC 1 cut(s) 375
BsiSI CCGG 3 cut(s) 102, 251, 376
BslFI GGGAC 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 1 cut(s) 375
Bso31I GGTCTC 1 cut(s) 344
Bsp119I TTCGAA 1 cut(s) 227
Bsp13I TCCGGA 1 cut(s) 250
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 3 cut(s) 14, 121, 247
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 2 cut(s) 138, 336
BspEI TCCGGA 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 70, 91, 220
BspMAI CTGCAG 1 cut(s) 261
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 2 cut(s) 9, 242
BspQI GCTCTTC 1 cut(s) 323
BspT104I TTCGAA 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 375
BsrGI TGTACA 1 cut(s) 291
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 375
BssMI GATC 3 cut(s) 14, 121, 247
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 2 cut(s) 263, 323
BstAUI TGTACA 1 cut(s) 291
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 151, 280
BstDEI CTNAG 2 cut(s) 125, 323
BstF5I GGATG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 3 cut(s) 17, 124, 250
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 3 cut(s) 14, 121, 247
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 153
BstSFI CTRYAG 2 cut(s) 133, 257
BstV1I GCAGC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 1 cut(s) 375
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 151, 280
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 375
Cfr13I GGNCC 3 cut(s) 69, 89, 219
Csp6I GTAC 1 cut(s) 292
CviAII CATG 2 cut(s) 32, 150
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 125, 323
DpnI GATC 3 cut(s) 16, 123, 249
DpnII GATC 3 cut(s) 14, 121, 247
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 263, 323
EarI CTCTTC 2 cut(s) 263, 323
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 3 cut(s) 69, 89, 219
Eco57I CTGAAG 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 151
FaeI CATG 2 cut(s) 35, 153
FaiI YATR 5 cut(s) 27, 33, 147, 151, 372
FaqI GGGAC 1 cut(s) 331
FatI CATG 2 cut(s) 31, 149
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 257
GsuI CTGGAG 2 cut(s) 102, 256
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 1 cut(s) 375
HapII CCGG 3 cut(s) 102, 251, 376
HhaI GCGC 1 cut(s) 140
Hin1II CATG 2 cut(s) 35, 153
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 319
HpaII CCGG 3 cut(s) 102, 251, 376
Hpy166II GTNNAC 2 cut(s) 292, 294
Hpy188III TCNNGA 3 cut(s) 196, 251, 325
Hpy8I GTNNAC 2 cut(s) 292, 294
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 118, 149, 212, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 125, 323
Hsp92II CATG 2 cut(s) 35, 153
HspAI GCGC 1 cut(s) 138
Kpn2I TCCGGA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 14, 121, 247
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 4 cut(s) 43, 77, 237, 253
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 279
MalI GATC 3 cut(s) 16, 123, 249
MboI GATC 3 cut(s) 14, 121, 247
MboII GAAGA 4 cut(s) 48, 277, 280, 340
MflI RGATCY 1 cut(s) 121
MluCI AATT 2 cut(s) 8, 94
MlyI GAGTC 1 cut(s) 313
MnlI CCTC 7 cut(s) 77, 80, 109, 151, 255, 264, 295
Mph1103I ATGCAT 1 cut(s) 151
MroI TCCGGA 1 cut(s) 250
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 1 cut(s) 108
MspI CCGG 3 cut(s) 102, 251, 376
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 3 cut(s) 14, 121, 247
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 2 cut(s) 35, 153
NlaIV GGNNCC 3 cut(s) 70, 91, 220
NsiI ATGCAT 1 cut(s) 151
NspI RCATGY 1 cut(s) 153
NspV TTCGAA 1 cut(s) 227
PaeI GCATGC 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 89
PshBI ATTAAT 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 89
PspN4I GGNNCC 3 cut(s) 70, 91, 220
PspPI GGNCC 3 cut(s) 69, 89, 219
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 1 cut(s) 261
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SapI GCTCTTC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 3 cut(s) 14, 121, 247
Sau96I GGNCC 3 cut(s) 69, 89, 219
SchI GAGTC 1 cut(s) 313
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 2 cut(s) 133, 257
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 3 cut(s) 69, 89, 219
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SphI GCATGC 1 cut(s) 153
Sse9I AATT 2 cut(s) 8, 94
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 13, 227
TasI AATT 2 cut(s) 8, 94
TatI WGTACW 1 cut(s) 291
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 301
TseI GCWGC 1 cut(s) 256
TspGWI ACGGA 2 cut(s) 75, 211
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 3 cut(s) 69, 89, 219
VspI ATTAAT 1 cut(s) 108
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.