MD15G1210400.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013231
Physical Location & Seq
Reverse (-)
16882037 .. 16882423
387 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1210400.v1.1.491

Sequence Viewer

Length: 387 bp
ATGGAAGATTTCAGATCCAGATCGTGCGGTCACGGAAGTTCGCAGATGGAGAGCTACAATGGCGGCAGCGGGTCGGCGGGACCCGCTTCATCGGGGGTCAATGGGATGCAGGATCTCAGGTGCTACAGCGCCTCCTACGCGACCTCTGTGCACCCGCAACAGCAGCAGCAAACCCAGGCGGGAAACAACGGCGAGAAGATCAGGAAGGGGAAGTCGGCGAACGGGTCGGCGACGAAGAGCTGGAGCCTGAGCGATCCGGAGCTGCAGAGGAAGAAGAGGGTGGCGAGCTATAAGGTGTATACGGTGGAAGGGAAGCTCAAAGGGTCGCTCCGGAAGAGCTTCCGGTGGCTCAAGGAAACTTGTAATAGAGTCGTCTATGGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

129

Amino Acids

14.02

Weight (kDa)

9.97

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 84 - 127 1.1e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 299
AccII CGCG 1 cut(s) 140
AccIII TCCGGA 2 cut(s) 256, 330
AciI CCGC 7 cut(s) 27, 63, 69, 77, 84, 155, 179
AclWI GGATC 3 cut(s) 9, 120, 248
AcoI YGGCCR 1 cut(s) 379
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 6 cut(s) 54, 240, 262, 288, 316, 339
AluI AGCT 6 cut(s) 54, 240, 262, 288, 316, 339
Alw21I GWGCWC 1 cut(s) 153
Alw44I GTGCAC 1 cut(s) 149
AlwI GGATC 3 cut(s) 9, 120, 248
Aor13HI TCCGGA 2 cut(s) 256, 330
AoxI GGCC 1 cut(s) 379
ApaLI GTGCAC 1 cut(s) 149
ApeKI GCWGC 4 cut(s) 66, 163, 166, 262
Asp700I GAANNNNTTC 1 cut(s) 338
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 80
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 78, 175, 178, 249
BccI CCATC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 205
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 1 cut(s) 176
BfmI CTRYAG 2 cut(s) 124, 263
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 5 cut(s) 64, 67, 164, 167, 263
BlsI GCNGC 5 cut(s) 65, 68, 165, 168, 264
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 3 cut(s) 81, 82, 245
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 262
Bpu10I CCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 174
BsaWI WCCGGW 3 cut(s) 256, 330, 342
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse118I RCCGGY 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 2 cut(s) 256, 330
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 19
BseMII CTCAG 2 cut(s) 130, 239
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 4 cut(s) 78, 175, 178, 249
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 4 cut(s) 257, 331, 343, 382
BslFI GGGAC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 153
Bsp13I TCCGGA 2 cut(s) 256, 330
Bsp143I GATC 5 cut(s) 14, 20, 112, 198, 253
BspACI CCGC 7 cut(s) 27, 63, 69, 77, 84, 155, 179
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 2 cut(s) 129, 240
BspEI TCCGGA 2 cut(s) 256, 330
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 3 cut(s) 81, 82, 245
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 3 cut(s) 9, 120, 248
BspQI GCTCTTC 2 cut(s) 230, 329
BsrFI RCCGGY 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 5 cut(s) 14, 20, 112, 198, 253
BssNAI GTATAC 1 cut(s) 300
Bst1107I GTATAC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 3 cut(s) 230, 269, 329
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 116, 248
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 5 cut(s) 17, 23, 115, 201, 256
BstMBI GATC 5 cut(s) 14, 20, 112, 198, 253
BstMWI GCNNNNNNNGC 4 cut(s) 60, 83, 137, 163
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 2 cut(s) 124, 263
BstSLI GKGCMC 1 cut(s) 153
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 4 cut(s) 78, 175, 178, 249
BstX2I RGATCY 2 cut(s) 14, 112
BstYI RGATCY 2 cut(s) 14, 112
BstZ17I GTATAC 1 cut(s) 300
BsuRI GGCC 1 cut(s) 381
BtsCI GGATG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 80
CviJI RGCY 9 cut(s) 54, 240, 246, 262, 288, 316, 339, 349, 381
CviKI_1 RGCY 9 cut(s) 54, 240, 246, 262, 288, 316, 339, 349, 381
DdeI CTNAG 2 cut(s) 116, 248
DpnI GATC 5 cut(s) 16, 22, 114, 200, 255
DpnII GATC 5 cut(s) 14, 20, 112, 198, 253
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 3 cut(s) 230, 269, 329
EarI CTCTTC 3 cut(s) 230, 269, 329
Eco47I GGWCC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 174
FaiI YATR 3 cut(s) 291, 300, 378
FaqI GGGAC 1 cut(s) 93
FauI CCCGC 5 cut(s) 62, 70, 91, 162, 172
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 5 cut(s) 64, 67, 164, 167, 263
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 5 cut(s) 64, 67, 164, 167, 263
GlaI GCGC 1 cut(s) 130
GluI GCNGC 5 cut(s) 64, 67, 164, 167, 263
GsuI CTGGAG 1 cut(s) 262
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 381
HapII CCGG 4 cut(s) 257, 331, 343, 382
HhaI GCGC 1 cut(s) 131
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 1 cut(s) 369
HpaII CCGG 4 cut(s) 257, 331, 343, 382
Hpy166II GTNNAC 2 cut(s) 151, 300
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 4 cut(s) 18, 202, 257, 331
Hpy8I GTNNAC 2 cut(s) 151, 300
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 199, 302
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 109, 151, 265
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 83, 137, 163
HpyF3I CTNAG 2 cut(s) 116, 248
HspAI GCGC 1 cut(s) 129
KflI GGGWCCC 1 cut(s) 80
Kpn2I TCCGGA 2 cut(s) 256, 330
Kzo9I GATC 5 cut(s) 14, 20, 112, 198, 253
LguI GCTCTTC 2 cut(s) 230, 329
LmnI GCTCC 3 cut(s) 243, 259, 333
Lsp1109I GCAGC 4 cut(s) 78, 175, 178, 249
LweI GCATC 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 29
MalI GATC 5 cut(s) 16, 22, 114, 200, 255
MboI GATC 5 cut(s) 14, 20, 112, 198, 253
MboII GAAGA 6 cut(s) 17, 208, 247, 283, 286, 346
MflI RGATCY 2 cut(s) 14, 112
MhlI GDGCHC 1 cut(s) 153
MlyI GAGTC 1 cut(s) 378
MnlI CCTC 4 cut(s) 142, 154, 261, 270
MroI TCCGGA 2 cut(s) 256, 330
MroXI GAANNNNTTC 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 4 cut(s) 257, 331, 343, 382
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 4 cut(s) 60, 83, 137, 163
NdeII GATC 5 cut(s) 14, 20, 112, 198, 253
NlaIV GGNNCC 3 cut(s) 81, 82, 245
NmuCI GTSAC 1 cut(s) 29
PciSI GCTCTTC 2 cut(s) 230, 329
PdmI GAANNNNTTC 1 cut(s) 338
PkrI GCNGC 5 cut(s) 65, 68, 165, 168, 264
PleI GAGTC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 377
PpuMI RGGWCCY 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 3 cut(s) 81, 82, 245
PspPI GGNCC 1 cut(s) 80
PspPPI RGGWCCY 1 cut(s) 80
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 2 cut(s) 14, 112
SapI GCTCTTC 2 cut(s) 230, 329
SatI GCNGC 5 cut(s) 64, 67, 164, 167, 263
Sau3AI GATC 5 cut(s) 14, 20, 112, 198, 253
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 378
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 153
SetI ASST 9 cut(s) 56, 122, 146, 242, 264, 290, 297, 318, 341
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 2 cut(s) 124, 263
SinI GGWCC 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SsiI CCGC 7 cut(s) 27, 63, 69, 77, 84, 155, 179
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 304
TauI GCSGC 1 cut(s) 66
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 4 cut(s) 66, 163, 166, 262
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 1 cut(s) 48
VneI GTGCAC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.