Prupe.7G206300_v2.0.a1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013231
Physical Location & Seq
Forward (+)
19026925 .. 19028157
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G206300.1

Sequence Viewer

Length: 474 bp
ATGCCACGATCCCCCAAGAATCTCTCATTTGACCAATTGACTGGAGCTTCAGAGACAGTGAGCTCAGATTTCCGTAAGTTCTCAGTGAAAGCAGCCATGGATGATTTCAGATCCAAATCATGCGGGCATGGAATGATGCAGATAGAGAGCTACTGCGGCAATGGCTCGGGGCCCACTTCCTCCGGCGGCATCAATGGAATGCAAGATCTCAGGTGTTACAGTGCCTCCTATGCGTCTTCAGTGCAGCCGCCGACCCAAACCCAGATGGGCAACAATGGCGATAGGTTCAAGAAGGGCAAGTCCACAAATGGGTCTGCTTCGAAAAGCTGGAGCTTTAATGATCCGGAGCTGCAGAGGAAGAAGAGGGTCGCTAGCTATAAGGTTTATACTGTGGAAGGCAAGCTCAAAGGCTCTCTCAGGAAGAGCTTCAGGTGGGTCAAGGAAACCTGCAACAGAGTGGTCTATGGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

158

Amino Acids

17.33

Weight (kDa)

9.91

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 455
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 5 cut(s) 123, 156, 186, 248, 469
AclWI GGATC 3 cut(s) 3, 105, 335
AcuI CTGAAG 3 cut(s) 33, 222, 412
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 9 cut(s) 47, 63, 150, 327, 333, 349, 375, 403, 426
AluI AGCT 9 cut(s) 47, 63, 150, 327, 333, 349, 375, 403, 426
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 3 cut(s) 3, 105, 335
Ama87I CYCGRG 1 cut(s) 166
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 1 cut(s) 170
ApaI GGGCCC 1 cut(s) 174
ApeKI GCWGC 3 cut(s) 92, 244, 349
Asp700I GAANNNNTTC 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 170, 171
AsuII TTCGAA 1 cut(s) 320
AsuNHI GCTAGC 1 cut(s) 371
AvaI CYCGRG 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 174
BanII GRGCYC 2 cut(s) 65, 174
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 104, 256, 336
BccI CCATC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 455
BglII AGATCT 1 cut(s) 205
BisI GCNGC 6 cut(s) 93, 157, 187, 245, 248, 350
BlsI GCNGC 6 cut(s) 94, 158, 188, 246, 249, 351
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 170, 171
BmiI GGNNCC 2 cut(s) 171, 172
BmsI GCATC 2 cut(s) 126, 198
BmtI GCTAGC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 2 cut(s) 63, 349
Bpu14I TTCGAA 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 115
BseAI TCCGGA 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 4 cut(s) 78, 96, 223, 430
BseNI ACTGG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 174
BseXI GCAGC 3 cut(s) 104, 256, 336
BsgI GTGCAG 1 cut(s) 263
BshFI GGCC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 2 cut(s) 183, 344
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 166
Bsp119I TTCGAA 1 cut(s) 320
Bsp120I GGGCCC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 65, 174
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 4 cut(s) 8, 110, 205, 340
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 5 cut(s) 123, 156, 186, 248, 469
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 4 cut(s) 77, 95, 222, 429
BspEI TCCGGA 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 171, 172
BspMAI CTGCAG 1 cut(s) 354
BspMI ACCTGC 1 cut(s) 455
BspOI GCTAGC 1 cut(s) 375
BspPI GGATC 3 cut(s) 3, 105, 335
BspQI GCTCTTC 1 cut(s) 416
BspT104I TTCGAA 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 166
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 4 cut(s) 8, 110, 205, 340
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 58, 221, 391
Bst6I CTCTTC 2 cut(s) 356, 416
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 3 cut(s) 125, 373, 401
BstDEI CTNAG 4 cut(s) 64, 82, 209, 416
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 4 cut(s) 11, 113, 208, 343
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 4 cut(s) 8, 110, 205, 340
BstMWI GCNNNNNNNGC 4 cut(s) 156, 162, 230, 276
BstSFI CTRYAG 1 cut(s) 350
BstSLI GKGCMC 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 104, 256, 336
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 2 cut(s) 110, 205
BstXI CCANNNNNNTGG 1 cut(s) 41
BstYI RGATCY 2 cut(s) 110, 205
BsuRI GGCC 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 4 cut(s) 63, 90, 226, 246
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 3 cut(s) 125, 373, 401
Cfr13I GGNCC 2 cut(s) 170, 171
CseI GACGC 1 cut(s) 222
CviAII CATG 3 cut(s) 97, 120, 128
DdeI CTNAG 4 cut(s) 64, 82, 209, 416
DpnI GATC 4 cut(s) 10, 112, 207, 342
DpnII GATC 4 cut(s) 8, 110, 205, 340
Eam1104I CTCTTC 2 cut(s) 356, 416
EarI CTCTTC 2 cut(s) 356, 416
Ecl136II GAGCTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 2 cut(s) 65, 174
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 3 cut(s) 33, 222, 412
Eco88I CYCGRG 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 2 cut(s) 65, 174
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 3 cut(s) 100, 123, 131
FaiI YATR 7 cut(s) 98, 121, 129, 231, 378, 387, 465
FatI CATG 3 cut(s) 96, 119, 127
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 6 cut(s) 93, 157, 187, 245, 248, 350
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 2 cut(s) 65, 174
Fsp4HI GCNGC 6 cut(s) 93, 157, 187, 245, 248, 350
FspBI CTAG 1 cut(s) 372
GluI GCNGC 6 cut(s) 93, 157, 187, 245, 248, 350
GsuI CTGGAG 2 cut(s) 63, 349
HaeIII GGCC 1 cut(s) 172
HapII CCGG 2 cut(s) 183, 344
HgaI GACGC 1 cut(s) 222
Hin1II CATG 3 cut(s) 100, 123, 131
HinfI GANTC 1 cut(s) 19
HpaII CCGG 2 cut(s) 183, 344
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 3 cut(s) 52, 67, 110
Hpy188III TCNNGA 3 cut(s) 289, 344, 418
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 286, 389
HpyCH4III ACNGT 3 cut(s) 58, 221, 391
HpyCH4V TGCA 5 cut(s) 139, 202, 244, 352, 450
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 162, 230, 276
HpyF3I CTNAG 4 cut(s) 64, 82, 209, 416
Hsp92II CATG 3 cut(s) 100, 123, 131
Kpn2I TCCGGA 1 cut(s) 343
Kzo9I GATC 4 cut(s) 8, 110, 205, 340
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 3 cut(s) 44, 330, 346
LpnPI CCDG 9 cut(s) 27, 196, 196, 275, 313, 357, 403, 415, 460
Lsp1109I GCAGC 3 cut(s) 104, 256, 336
LweI GCATC 2 cut(s) 126, 198
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 215
MalI GATC 4 cut(s) 10, 112, 207, 342
MboI GATC 4 cut(s) 8, 110, 205, 340
MboII GAAGA 4 cut(s) 228, 370, 373, 433
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 2 cut(s) 110, 205
MhlI GDGCHC 2 cut(s) 65, 174
MluCI AATT 1 cut(s) 35
MnlI CCTC 4 cut(s) 190, 235, 348, 357
MroI TCCGGA 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 425
MseI TTAA 1 cut(s) 336
MspI CCGG 2 cut(s) 183, 344
MunI CAATTG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 204
MwoI GCNNNNNNNGC 4 cut(s) 156, 162, 230, 276
NcoI CCATGG 1 cut(s) 96
NdeII GATC 4 cut(s) 8, 110, 205, 340
NheI GCTAGC 1 cut(s) 371
NlaIII CATG 3 cut(s) 100, 123, 131
NlaIV GGNNCC 2 cut(s) 171, 172
NspV TTCGAA 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 416
PctI GAATGC 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 6 cut(s) 94, 158, 188, 246, 249, 351
Psp124BI GAGCTC 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 171, 172
PspOMI GGGCCC 1 cut(s) 170
PspPI GGNCC 2 cut(s) 170, 171
PstI CTGCAG 1 cut(s) 354
PsuI RGATCY 2 cut(s) 110, 205
SacI GAGCTC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 6 cut(s) 93, 157, 187, 245, 248, 350
Sau3AI GATC 4 cut(s) 8, 110, 205, 340
Sau96I GGNCC 2 cut(s) 170, 171
SduI GDGCHC 2 cut(s) 65, 174
SfaNI GCATC 2 cut(s) 126, 198
SfcI CTRYAG 1 cut(s) 350
SfuI TTCGAA 1 cut(s) 320
Sse9I AATT 1 cut(s) 35
SsiI CCGC 5 cut(s) 123, 156, 186, 248, 469
SspMI CTAG 1 cut(s) 372
SstI GAGCTC 1 cut(s) 65
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 3 cut(s) 58, 221, 391
TaqI TCGA 1 cut(s) 320
TasI AATT 1 cut(s) 35
TauI GCSGC 3 cut(s) 159, 189, 250
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 4 cut(s) 63, 90, 226, 246
TseI GCWGC 3 cut(s) 92, 244, 349
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 4 cut(s) 63, 90, 226, 246
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.