MD11G1281800.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013231
Physical Location & Seq
Forward (+)
39956481 .. 39956927
447 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1281800.v1.1.491

Sequence Viewer

Length: 447 bp
ATGGAAGGTTTCAGATCCAGATCGTGCGGTCACAGAAAGTCGCAGATGGAGAGCTACAATGGCTCTCAGGTGCTACAATGCCTCATACGTGGCGTTTGTGCACCGCAACAGCAACAAACCCAGGCGGGAAACAACGGCAAGAAGATCAGGAAGGGGAAGTCGGCGAACGGGTCGGTGACAAAGAGCTGGAGCCTGAGTGATCTAGAGATACAGAGGAAGAAGAGGGTGGCAAGCAATAAGGTGTATACGGTGGAAGGGAAACTTAAAGGGTCGCTACAGAAGAGATTCATGCGGAGAGGGTGTACAGATGAGAGAAGGGAGATAGGAGGTCAGGTGGAGAGAGAACGGACGAAGGGTTGGGTGGGTGAGAGAAGGGGTGGAGGGTTGGGTGGGATTGGAGGGATGGAGGGTTTGGGTGGGATCGTCGGAGGGGGGGTTAGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

149

Amino Acids

16.11

Weight (kDa)

10.67

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 66 - 96 1.8e-11 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 245
AciI CCGC 4 cut(s) 27, 104, 125, 292
AclWI GGATC 2 cut(s) 9, 428
AfaI GTAC 1 cut(s) 304
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 2 cut(s) 54, 186
AluI AGCT 2 cut(s) 54, 186
Alw21I GWGCWC 1 cut(s) 103
Alw44I GTGCAC 1 cut(s) 99
AlwI GGATC 2 cut(s) 9, 428
ApaLI GTGCAC 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 187, 377
BaeGI GKGCMC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 103
BccI CCATC 2 cut(s) 40, 397
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 122
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 208
BsaAI YACGTR 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 7 cut(s) 181, 211, 286, 316, 318, 348, 420
Bse8I GATNNNNATC 1 cut(s) 19
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 408
BseJI GATNNNNATC 1 cut(s) 19
BseMII CTCAG 2 cut(s) 80, 185
BseSI GKGCMC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 302
Bsp143I GATC 5 cut(s) 14, 20, 144, 199, 420
BspACI CCGC 4 cut(s) 27, 104, 125, 292
BspCNI CTCAG 2 cut(s) 79, 186
BspLI GGNNCC 1 cut(s) 191
BspPI GGATC 2 cut(s) 9, 428
BsrGI TGTACA 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 5 cut(s) 14, 20, 144, 199, 420
BssNAI GTATAC 1 cut(s) 246
Bst1107I GTATAC 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 2 cut(s) 215, 275
BstAUI TGTACA 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 66, 194
BstF5I GGATG 1 cut(s) 408
BstKTI GATC 5 cut(s) 17, 23, 147, 202, 423
BstMBI GATC 5 cut(s) 14, 20, 144, 199, 420
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 275
BstSLI GKGCMC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BstZ17I GTATAC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 303
CviAII CATG 1 cut(s) 289
CviJI RGCY 4 cut(s) 54, 63, 186, 192
CviKI_1 RGCY 4 cut(s) 54, 63, 186, 192
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 2 cut(s) 66, 194
DpnI GATC 5 cut(s) 16, 22, 146, 201, 422
DpnII GATC 5 cut(s) 14, 20, 144, 199, 420
Eam1104I CTCTTC 2 cut(s) 215, 275
EarI CTCTTC 2 cut(s) 215, 275
EcoRII CCWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 292
FaiI YATR 3 cut(s) 86, 246, 290
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 118
FblI GTMKAC 1 cut(s) 245
FokI GGATG 1 cut(s) 415
FspBI CTAG 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 208
Hin1II CATG 1 cut(s) 292
HinfI GANTC 1 cut(s) 285
HphI GGTGA 2 cut(s) 187, 377
Hpy166II GTNNAC 3 cut(s) 101, 246, 303
Hpy188I TCNGA 2 cut(s) 14, 428
Hpy188III TCNNGA 3 cut(s) 18, 148, 203
Hpy8I GTNNAC 3 cut(s) 101, 246, 303
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 5 cut(s) 145, 248, 309, 346, 366
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 66, 194
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 5 cut(s) 14, 20, 144, 199, 420
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 8 cut(s) 31, 53, 107, 133, 134, 172, 206, 317
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 2 cut(s) 29, 175
MalI GATC 5 cut(s) 16, 22, 146, 201, 422
MboI GATC 5 cut(s) 14, 20, 144, 199, 420
MboII GAAGA 4 cut(s) 154, 229, 232, 292
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 9 cut(s) 92, 207, 216, 290, 320, 374, 392, 400, 422
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 60
NdeII GATC 5 cut(s) 14, 20, 144, 199, 420
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 191
NmuCI GTSAC 2 cut(s) 29, 175
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 285
Ppu21I YACGTR 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 264
Sau3AI GATC 5 cut(s) 14, 20, 144, 199, 420
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 103
SetI ASST 8 cut(s) 10, 56, 72, 91, 188, 243, 331, 336
SfcI CTRYAG 1 cut(s) 275
SsiI CCGC 4 cut(s) 27, 104, 125, 292
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 91
TatI WGTACW 1 cut(s) 302
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseFI GTSAC 2 cut(s) 29, 175
Tsp45I GTSAC 2 cut(s) 29, 175
TspDTI ATGAA 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 361
VneI GTGCAC 1 cut(s) 99
XbaI TCTAGA 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.