pycom02g06540

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013231
Physical Location & Seq
Reverse (-)
4549925 .. 4550299
375 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g06540.1

Sequence Viewer

Length: 375 bp
ATGGAAGATTTCAGATCCAAATCGTGCGGCCACGGAAGAACGGAGGTGGAGACCTACAATGGCGGCAGCGGCGCTTCGTCGGGAGTCAATGGGATGCAGGATTTCAGGTGCTACAGCGCGTCCTACGCGTCCTCAGTGCACCCGCAGCAGCAGCAGCAAACCCAGGCGGGAAGCAGCGACGAGAAGTTCAGGAAGGGGAAGTCGGCGAACGGATCGGCGACGAAGAGCTGGAGCTTGAGCGATCCGGAGCTGCAGAGGAAGAAGAGGGTGGCGAGCTATAAAGTTTATACGGTGGAAGGGAAGCTCAAAGGGTCGCTCCGGAAGAGCTTCCGGTGGCTCAAGGAAACTTGTAATAGAGTCGTCTATGGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

125

Amino Acids

13.8

Weight (kDa)

9.84

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 80 - 123 1e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 119, 128
AccIII TCCGGA 2 cut(s) 244, 318
AciI CCGC 6 cut(s) 27, 63, 69, 143, 167, 370
AclWI GGATC 3 cut(s) 9, 220, 236
AcoI YGGCCR 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 126
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 6 cut(s) 228, 234, 250, 276, 304, 327
AluI AGCT 6 cut(s) 228, 234, 250, 276, 304, 327
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 137
AlwI GGATC 3 cut(s) 9, 220, 236
Aor13HI TCCGGA 2 cut(s) 244, 318
AoxI GGCC 1 cut(s) 28
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 7 cut(s) 66, 145, 148, 151, 154, 174, 250
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 74, 119
BaeGI GKGCMC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 7 cut(s) 78, 157, 160, 163, 166, 186, 237
BciT130I CCWGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 44
BfmI CTRYAG 2 cut(s) 112, 251
BfoI RGCGCY 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 250
BpuEI CTTGAG 2 cut(s) 256, 323
BsaBI GATNNNNATC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 31, 162
BsaWI WCCGGW 3 cut(s) 244, 318, 330
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 2 cut(s) 244, 318
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 31, 162
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 19
BseMII CTCAG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 7 cut(s) 78, 157, 160, 163, 166, 186, 237
Bsh1236I CGCG 2 cut(s) 119, 128
BshFI GGCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 3 cut(s) 245, 319, 331
BsmAI GTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 30
Bso31I GGTCTC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 141
Bsp13I TCCGGA 2 cut(s) 244, 318
Bsp143I GATC 3 cut(s) 14, 212, 241
BspACI CCGC 6 cut(s) 27, 63, 69, 143, 167, 370
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 146
BspEI TCCGGA 2 cut(s) 244, 318
BspFNI CGCG 2 cut(s) 119, 128
BspMAI CTGCAG 1 cut(s) 255
BspPI GGATC 3 cut(s) 9, 220, 236
BspQI GCTCTTC 2 cut(s) 218, 317
BspTNI GGTCTC 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 31, 162
BssMI GATC 3 cut(s) 14, 212, 241
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 3 cut(s) 218, 257, 317
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 133
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 2 cut(s) 119, 128
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 74, 119
BstKTI GATC 3 cut(s) 17, 215, 244
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 3 cut(s) 14, 212, 241
BstMWI GCNNNNNNNGC 5 cut(s) 69, 125, 145, 151, 154
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstSFI CTRYAG 2 cut(s) 112, 251
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 2 cut(s) 119, 128
BstV1I GCAGC 7 cut(s) 78, 157, 160, 163, 166, 186, 237
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 2 cut(s) 74, 119
CseI GACGC 2 cut(s) 108, 117
CviJI RGCY 8 cut(s) 30, 228, 234, 250, 276, 304, 327, 337
CviKI_1 RGCY 8 cut(s) 30, 228, 234, 250, 276, 304, 327, 337
DdeI CTNAG 1 cut(s) 133
DpnI GATC 3 cut(s) 16, 214, 243
DpnII GATC 3 cut(s) 14, 212, 241
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 3 cut(s) 218, 257, 317
EarI CTCTTC 3 cut(s) 218, 257, 317
Eco31I GGTCTC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 162
FaiI YATR 3 cut(s) 279, 288, 366
FauI CCCGC 2 cut(s) 150, 160
FokI GGATG 1 cut(s) 106
GlaI GCGC 2 cut(s) 73, 118
GsuI CTGGAG 1 cut(s) 250
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 30
HapII CCGG 3 cut(s) 245, 319, 331
HgaI GACGC 2 cut(s) 108, 117
HhaI GCGC 2 cut(s) 74, 119
Hin6I GCGC 2 cut(s) 72, 117
HinP1I GCGC 2 cut(s) 72, 117
HinfI GANTC 2 cut(s) 84, 357
HpaII CCGG 3 cut(s) 245, 319, 331
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 4 cut(s) 81, 190, 245, 319
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 3 cut(s) 82, 182, 223
HpyAV CCTTC 2 cut(s) 187, 290
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 3 cut(s) 97, 139, 253
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 125, 145, 151, 154
HpyF3I CTNAG 1 cut(s) 133
HspAI GCGC 2 cut(s) 72, 117
Kpn2I TCCGGA 2 cut(s) 244, 318
Kzo9I GATC 3 cut(s) 14, 212, 241
LguI GCTCTTC 2 cut(s) 218, 317
LmnI GCTCC 3 cut(s) 231, 247, 321
LpnPI CCDG 9 cut(s) 83, 91, 149, 175, 176, 214, 258, 332, 344
Lsp1109I GCAGC 7 cut(s) 78, 157, 160, 163, 166, 186, 237
LweI GCATC 1 cut(s) 84
MalI GATC 3 cut(s) 16, 214, 243
MboI GATC 3 cut(s) 14, 212, 241
MboII GAAGA 6 cut(s) 17, 48, 235, 271, 274, 334
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 141
MluI ACGCGT 1 cut(s) 126
MlyI GAGTC 2 cut(s) 93, 366
MnlI CCTC 4 cut(s) 37, 142, 249, 258
MroI TCCGGA 2 cut(s) 244, 318
MroXI GAANNNNTTC 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 3 cut(s) 245, 319, 331
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 2 cut(s) 119, 128
MwoI GCNNNNNNNGC 5 cut(s) 69, 125, 145, 151, 154
NdeII GATC 3 cut(s) 14, 212, 241
PciSI GCTCTTC 2 cut(s) 218, 317
PdmI GAANNNNTTC 1 cut(s) 326
PleI GAGTC 2 cut(s) 92, 365
PpsI GAGTC 2 cut(s) 92, 365
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PstI CTGCAG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 14
SapI GCTCTTC 2 cut(s) 218, 317
Sau3AI GATC 3 cut(s) 14, 212, 241
SchI GAGTC 2 cut(s) 93, 366
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 141
SetI ASST 9 cut(s) 48, 56, 110, 230, 236, 252, 278, 306, 329
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 2 cut(s) 112, 251
SmlI CTYRAG 2 cut(s) 235, 338
SmoI CTYRAG 2 cut(s) 235, 338
SsiI CCGC 6 cut(s) 27, 63, 69, 143, 167, 370
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 292
TauI GCSGC 3 cut(s) 30, 66, 72
TscAI CASTG 1 cut(s) 141
TseI GCWGC 7 cut(s) 66, 145, 148, 151, 154, 174, 250
TspGWI ACGGA 3 cut(s) 48, 56, 225
TspRI CASTG 1 cut(s) 141
VneI GTGCAC 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.