MD02G1082500.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013231
Physical Location & Seq
Reverse (-)
6456587 .. 6456967
381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1082500.v1.1.491

Sequence Viewer

Length: 381 bp
ATGGAAGATTTCAGATCCAAATCGTGCGGCCACGGAAGAACGGAGGTGGAGACCTACAATGGCGGCAGCGGGTCGGCGGGACCCGCTTCGTCGGGGATCAATGGGATGCAGGATCTCAGGTGCTACAGCGCGTCCTACGCGTCCTCAGTGCACCCGCAGCAGCAAACCCAGGCGGGAAGCAACGGCGAGAAGTTCAGGAAGGGGAAGTCGGCGAACGGTTCGGTGACGAAGAGCTGGAGCTTGAGCGATCCGGAGCTGCGGAGGAAGAAGAGGGTGGCGAGCTATAAGGTTTATACGGTGGAAGGGAAGCTCAAAGGGTCGCTCCGGAAGAGCTTCCGGTGGCTCAAGGAAACTTGTAATAGAGTCGTCTATGGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

127

Amino Acids

13.86

Weight (kDa)

10.01

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 82 - 125 3.7e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 131, 140
AccIII TCCGGA 2 cut(s) 250, 324
AciI CCGC 9 cut(s) 27, 63, 69, 77, 84, 155, 173, 259, 376
AclWI GGATC 4 cut(s) 9, 104, 120, 242
AcoI YGGCCR 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 138
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 6 cut(s) 234, 240, 256, 282, 310, 333
AluI AGCT 6 cut(s) 234, 240, 256, 282, 310, 333
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 149
AlwI GGATC 4 cut(s) 9, 104, 120, 242
Aor13HI TCCGGA 2 cut(s) 250, 324
AoxI GGCC 1 cut(s) 28
ApaLI GTGCAC 1 cut(s) 149
ApeKI GCWGC 4 cut(s) 66, 157, 160, 256
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 78, 169, 172, 243
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 6 cut(s) 28, 64, 67, 158, 161, 257
BlsI GCNGC 6 cut(s) 29, 65, 68, 159, 162, 258
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 81, 82
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 256
BpuEI CTTGAG 2 cut(s) 262, 329
BsaBI GATNNNNATC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 31, 168
BsaWI WCCGGW 3 cut(s) 250, 324, 336
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 2 cut(s) 250, 324
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 31, 168
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 19
BseMII CTCAG 2 cut(s) 130, 159
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 4 cut(s) 78, 169, 172, 243
Bsh1236I CGCG 2 cut(s) 131, 140
BshFI GGCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 3 cut(s) 251, 325, 337
BslFI GGGAC 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 1 cut(s) 30
Bso31I GGTCTC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 153
Bsp13I TCCGGA 2 cut(s) 250, 324
Bsp143I GATC 4 cut(s) 14, 96, 112, 247
BspACI CCGC 9 cut(s) 27, 63, 69, 77, 84, 155, 173, 259, 376
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 129, 158
BspEI TCCGGA 2 cut(s) 250, 324
BspFNI CGCG 2 cut(s) 131, 140
BspLI GGNNCC 2 cut(s) 81, 82
BspPI GGATC 4 cut(s) 9, 104, 120, 242
BspQI GCTCTTC 2 cut(s) 224, 323
BspTNI GGTCTC 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 31, 168
BssMI GATC 4 cut(s) 14, 96, 112, 247
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 218, 298
Bst6I CTCTTC 3 cut(s) 224, 263, 323
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 116, 145
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 131, 140
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 4 cut(s) 17, 99, 115, 250
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 4 cut(s) 14, 96, 112, 247
BstMWI GCNNNNNNNGC 3 cut(s) 83, 137, 157
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 124
BstSLI GKGCMC 1 cut(s) 153
BstUI CGCG 2 cut(s) 131, 140
BstV1I GCAGC 4 cut(s) 78, 169, 172, 243
BstX2I RGATCY 2 cut(s) 14, 112
BstYI RGATCY 2 cut(s) 14, 112
BsuRI GGCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 280
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 80
CseI GACGC 2 cut(s) 120, 129
CviJI RGCY 8 cut(s) 30, 234, 240, 256, 282, 310, 333, 343
CviKI_1 RGCY 8 cut(s) 30, 234, 240, 256, 282, 310, 333, 343
DdeI CTNAG 2 cut(s) 116, 145
DpnI GATC 4 cut(s) 16, 98, 114, 249
DpnII GATC 4 cut(s) 14, 96, 112, 247
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 3 cut(s) 224, 263, 323
EarI CTCTTC 3 cut(s) 224, 263, 323
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 168
FaiI YATR 3 cut(s) 285, 294, 372
FaqI GGGAC 1 cut(s) 93
FauI CCCGC 5 cut(s) 62, 70, 91, 162, 166
Fnu4HI GCNGC 6 cut(s) 28, 64, 67, 158, 161, 257
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 6 cut(s) 28, 64, 67, 158, 161, 257
GlaI GCGC 1 cut(s) 130
GluI GCNGC 6 cut(s) 28, 64, 67, 158, 161, 257
GsuI CTGGAG 1 cut(s) 256
HaeIII GGCC 1 cut(s) 30
HapII CCGG 3 cut(s) 251, 325, 337
HgaI GACGC 2 cut(s) 120, 129
HhaI GCGC 1 cut(s) 131
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 1 cut(s) 363
HpaII CCGG 3 cut(s) 251, 325, 337
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 3 cut(s) 196, 251, 325
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 193, 296
HpyCH4III ACNGT 2 cut(s) 218, 298
HpyCH4V TGCA 2 cut(s) 109, 151
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 137, 157
HpyF3I CTNAG 2 cut(s) 116, 145
HspAI GCGC 1 cut(s) 129
KflI GGGWCCC 1 cut(s) 80
Kpn2I TCCGGA 2 cut(s) 250, 324
Kzo9I GATC 4 cut(s) 14, 96, 112, 247
LguI GCTCTTC 2 cut(s) 224, 323
LmnI GCTCC 3 cut(s) 237, 253, 327
LpnPI CCDG 9 cut(s) 95, 103, 155, 181, 182, 220, 264, 338, 350
Lsp1109I GCAGC 4 cut(s) 78, 169, 172, 243
LweI GCATC 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 223
MalI GATC 4 cut(s) 16, 98, 114, 249
MboI GATC 4 cut(s) 14, 96, 112, 247
MboII GAAGA 6 cut(s) 17, 48, 241, 277, 280, 340
MflI RGATCY 2 cut(s) 14, 112
MhlI GDGCHC 1 cut(s) 153
MluI ACGCGT 1 cut(s) 138
MlyI GAGTC 1 cut(s) 372
MnlI CCTC 4 cut(s) 37, 154, 255, 264
MroI TCCGGA 2 cut(s) 250, 324
MroXI GAANNNNTTC 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 3 cut(s) 251, 325, 337
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 2 cut(s) 131, 140
MwoI GCNNNNNNNGC 3 cut(s) 83, 137, 157
NdeII GATC 4 cut(s) 14, 96, 112, 247
NlaIV GGNNCC 2 cut(s) 81, 82
NmuCI GTSAC 1 cut(s) 223
PciSI GCTCTTC 2 cut(s) 224, 323
PdmI GAANNNNTTC 1 cut(s) 332
PkrI GCNGC 6 cut(s) 29, 65, 68, 159, 162, 258
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 81, 82
PspPI GGNCC 1 cut(s) 80
PspPPI RGGWCCY 1 cut(s) 80
PsuI RGATCY 2 cut(s) 14, 112
SapI GCTCTTC 2 cut(s) 224, 323
SatI GCNGC 6 cut(s) 28, 64, 67, 158, 161, 257
Sau3AI GATC 4 cut(s) 14, 96, 112, 247
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 153
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 124
SinI GGWCC 1 cut(s) 80
SmlI CTYRAG 2 cut(s) 241, 344
SmoI CTYRAG 2 cut(s) 241, 344
SsiI CCGC 9 cut(s) 27, 63, 69, 77, 84, 155, 173, 259, 376
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 218, 298
TauI GCSGC 2 cut(s) 30, 66
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 4 cut(s) 66, 157, 160, 256
Tsp45I GTSAC 1 cut(s) 223
TspGWI ACGGA 2 cut(s) 48, 56
TspRI CASTG 1 cut(s) 153
VneI GTGCAC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.