Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013475

Physical Location & Seq

Genomic Coordinates Reverse (-)

4253819 .. 4256242

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGTGTGGTTTCAATGCGAGGACTGTGGAGACAATCTGAAGAAACCCAAGTTGCCCCACCACTTCAACACCTGCTCTGCTGGCAAGCTATCATGCATCGATTGTGGTGAGATGTTTAGCAGAGAAACCGTTCAGGGTCACACCCAGTGTATTACTGAAACGGAAAAATATGGTCCAAAGGGGCAAGTGAAAGCATCGAATGGGGGAGCCAAGCCCAAGAAGGATTCGAAGCAGCCAGCTGATTTAGATATTACTGTTGGGTTATCTGAGCGCCCGCCGTGGTTTTGTAGTCTTTGCAACACTAATGCGACCAGTAGGCAGTCACTGATGCTCCATGCTGAAGGAAAGAAGCACAGGGGAAAAGCTCGAGCTATTCATGCTGCCAAGCAAAAGGCTATGCAGCCGGAAGAGTCTGCTCCAGATACAAAACCCCAACCTGAGGAAACTCCAAAAGGAACAGAAGAACCTGCATTGCAGGAAGCATCAGGAATTGATGCTGTTGATAAAAGTTCTGAAGCAGAGAATGGGAAGCTGTCAAAGAAAAAGAGAAAGCTAGAAGAGTCCAAGAATGATGAATCGAGAAAAAAGACCAAGGATGCTACATCTGGGGAAGTGGGCAATGAGAAAGTGATTCAGAACGGGAAAGCAGAAACAAATGGAAAAGAGACCAAGTTGAAGAAAGATAAGGAAGATGATGAGACAAAAATTAAGTGGAAGAAGTTGATTACATCAACCTTAAAATCGAAAGACGGAGTTCTGAAGATGAGAAAACTGAAAAAACTTGTTCTAGATGCTATTGCGGAATCTGGCATAACAGAAGATGAAGAAAGCCTGAGTACAAATTTTGAGGAAAAGATCAATTCAAGTTCCAGATTTAGAGTTGAGAACAAGTATGTTCACTTGGTGGTGAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LYAR zf-met

Protein Analysis

306

Amino Acids

33.86

Weight (kDa)

8.88

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LYAR	PF08790	30 - 57	8.5e-14	LYAR-type C2HC zinc finger
WHD_LYAR	PF25879	234 - 303	3.5e-24	LYAR family winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19385
fragaria_vesca	FvH4_1g08060
malus_domestica	MD02G1085300.v1.1 MD15G1212400.v1.1
prunus_persica	Prupe.7G204300_v2.0.a1 Prupe.7G204300_v2.0.a1
pyrus_communis	pycom02g06810 pycom15g18870
rosa_chinensis	RchiOBHm_Chr2g0094111
rosa_laevigata	RLG00000016456
rosa_multiflora	Rmu_sc0026373.1_g000002 Rmu_ssc0000149.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147470
rosa_rugosa	Rorug02G0041000
rosa_samantha	Rh2AG088600 Rh2BG088700 Rh2CG091100 Rh2DG087700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	80
Acc36I	ACCTGC	2 cut(s)	80, 475
AciI	CCGC	2 cut(s)	275, 800
AcsI	RAATTY	1 cut(s)	841
AcuI	CTGAAG	4 cut(s)	59, 360, 534, 779
AdeI	CACNNNGTG	2 cut(s)	147, 904
AfaI	GTAC	1 cut(s)	838
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	4 cut(s)	14, 67, 676, 864
AluBI	AGCT	6 cut(s)	88, 239, 365, 371, 532, 553
AluI	AGCT	6 cut(s)	88, 239, 365, 371, 532, 553
Alw26I	GTCTC	3 cut(s)	24, 659, 692
AlwNI	CAGNNNCTG	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	366
ApeKI	GCWGC	3 cut(s)	232, 380, 400
ApoI	RAATTY	1 cut(s)	841
Asp700I	GAANNNNTTC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	244, 367, 412
BceAI	ACGGC	1 cut(s)	262
BcoDI	GTCTC	3 cut(s)	24, 659, 692
BfaI	CTAG	2 cut(s)	554, 788
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	2 cut(s)	80, 475
BisI	GCNGC	3 cut(s)	233, 381, 401
BlsI	GCNGC	3 cut(s)	234, 382, 402
Bme18I	GGWCC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	7 cut(s)	105, 203, 318, 484, 491, 586, 781
BmuI	ACTGGG	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	227
Bsa29I	ATCGAT	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	2 cut(s)	278, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	145, 312
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	2 cut(s)	470, 625
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	278, 591
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	2 cut(s)	470, 625
BseMII	CTCAG	3 cut(s)	258, 429, 824
BseNI	ACTGG	2 cut(s)	145, 312
BseXI	GCAGC	3 cut(s)	244, 367, 412
BshVI	ATCGAT	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	3 cut(s)	24, 659, 692
Bso31I	GGTCTC	1 cut(s)	659
BsoBI	CYCGRG	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	855
BspACI	CCGC	2 cut(s)	275, 800
BspCNI	CTCAG	3 cut(s)	259, 430, 825
BspDI	ATCGAT	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	208
BspMI	ACCTGC	2 cut(s)	80, 475
BspT104I	TTCGAA	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	659
BsrDI	GCAATG	2 cut(s)	470, 625
BsrI	ACTGG	2 cut(s)	145, 312
BssECI	CCNNGG	2 cut(s)	278, 591
BssMI	GATC	1 cut(s)	855
BssT1I	CCWWGG	1 cut(s)	591
Bst4CI	ACNGT	3 cut(s)	26, 130, 256
Bst6I	CTCTTC	2 cut(s)	402, 552
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	4 cut(s)	82, 86, 237, 275
BstDEI	CTNAG	3 cut(s)	267, 438, 833
BstDSI	CCRYGG	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	601
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	1 cut(s)	858
BstMAI	GTCTC	3 cut(s)	24, 659, 692
BstMBI	GATC	1 cut(s)	855
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 377
BstV1I	GCAGC	3 cut(s)	244, 367, 412
Bsu15I	ATCGAT	1 cut(s)	99
Bsu36I	CCTNAGG	1 cut(s)	438
BsuTUI	ATCGAT	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	601
BtsIMutI	CAGTG	2 cut(s)	152, 323
BveI	ACCTGC	2 cut(s)	80, 475
Cac8I	GCNNGC	4 cut(s)	82, 86, 237, 275
CaiI	CAGNNNCTG	1 cut(s)	325
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	837
CviAII	CATG	3 cut(s)	93, 335, 377
CviQI	GTAC	1 cut(s)	837
DdeI	CTNAG	3 cut(s)	267, 438, 833
DpnI	GATC	1 cut(s)	857
DpnII	GATC	1 cut(s)	855
DraIII	CACNNNGTG	2 cut(s)	147, 904
Eam1104I	CTCTTC	2 cut(s)	402, 552
EarI	CTCTTC	2 cut(s)	402, 552
Eco130I	CCWWGG	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	4 cut(s)	59, 360, 534, 779
Eco81I	CCTNAGG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	3 cut(s)	96, 338, 380
FaiI	YATR	7 cut(s)	94, 171, 336, 378, 398, 812, 894
FatI	CATG	3 cut(s)	92, 334, 376
FauI	CCCGC	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	233, 381, 401
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	3 cut(s)	233, 381, 401
FspBI	CTAG	2 cut(s)	554, 788
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	3 cut(s)	233, 381, 401
GsuI	CTGGAG	1 cut(s)	402
HaeII	RGCGCY	1 cut(s)	274
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	96, 338, 380
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	6 cut(s)	224, 410, 560, 575, 631, 803
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	898
Hpy188I	TCNGA	5 cut(s)	39, 268, 514, 636, 759
Hpy188III	TCNNGA	5 cut(s)	419, 486, 579, 788, 870
Hpy8I	GTNNAC	1 cut(s)	898
HpyAV	CCTTC	2 cut(s)	214, 335
HpyCH4III	ACNGT	3 cut(s)	26, 130, 256
HpyCH4V	TGCA	5 cut(s)	96, 297, 400, 470, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 377
HpyF3I	CTNAG	3 cut(s)	267, 438, 833
Hsp92II	CATG	3 cut(s)	96, 338, 380
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	855
LmnI	GCTCC	3 cut(s)	206, 336, 421
Lsp1109I	GCAGC	3 cut(s)	244, 367, 412
LweI	GCATC	7 cut(s)	105, 203, 318, 484, 491, 586, 781
MaeI	CTAG	2 cut(s)	554, 788
MaeIII	GTNAC	2 cut(s)	137, 321
MalI	GATC	1 cut(s)	857
MboI	GATC	1 cut(s)	855
MluCI	AATT	4 cut(s)	489, 705, 841, 859
MlyI	GAGTC	2 cut(s)	419, 569
MnlI	CCTC	3 cut(s)	13, 433, 841
Mph1103I	ATGCAT	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	3 cut(s)	708, 737, 916
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	81, 377
NdeII	GATC	1 cut(s)	855
NlaIII	CATG	3 cut(s)	96, 338, 380
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	137, 321
NsiI	ATGCAT	1 cut(s)	98
NspV	TTCGAA	1 cut(s)	227
PaeR7I	CTCGAG	1 cut(s)	366
PaqCI	CACCTGC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	224, 575, 631, 803
PkrI	GCNGC	3 cut(s)	234, 382, 402
PleI	GAGTC	2 cut(s)	418, 568
PpsI	GAGTC	2 cut(s)	418, 568
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	173
PspXI	VCTCGAGB	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	838
RsaNI	GTAC	1 cut(s)	837
SaqAI	TTAA	3 cut(s)	708, 737, 916
SatI	GCNGC	3 cut(s)	233, 381, 401
Sau3AI	GATC	1 cut(s)	855
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	419, 569
SfaNI	GCATC	7 cut(s)	105, 203, 318, 484, 491, 586, 781
Sfr274I	CTCGAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	4 cut(s)	489, 705, 841, 859
SsiI	CCGC	2 cut(s)	275, 800
SspMI	CTAG	2 cut(s)	554, 788
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	26, 130, 256
TaqI	TCGA	6 cut(s)	99, 197, 227, 367, 578, 743
TasI	AATT	4 cut(s)	489, 705, 841, 859
TatI	WGTACW	1 cut(s)	836
TfiI	GAWTC	4 cut(s)	224, 575, 631, 803
Tru1I	TTAA	3 cut(s)	708, 737, 916
Tru9I	TTAA	3 cut(s)	708, 737, 916
TscAI	CASTG	2 cut(s)	152, 330
TseFI	GTSAC	2 cut(s)	137, 321
TseI	GCWGC	3 cut(s)	232, 380, 400
Tsp45I	GTSAC	2 cut(s)	137, 321
TspDTI	ATGAA	3 cut(s)	365, 588, 837
TspGWI	ACGGA	2 cut(s)	176, 765
TspRI	CASTG	2 cut(s)	152, 330
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	841
XbaI	TCTAGA	1 cut(s)	787
XhoI	CTCGAG	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	2 cut(s)	554, 788
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.