Rmu_ssc0000149.1_g000002

LYAR-type C2HC zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000149.1
OG0013475
Physical Location & Seq
Reverse (-)
3597 .. 5484
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000149.1_g000002.1.cds

Sequence Viewer

Length: 924 bp
atggtgtggtttcaatgcgaggactgtggagacaatctcaagaaacccaagttgcctcaccacttcaacacctgctctgctcgcaagctttcgtgtatcgattgtggtgagatgtttgggagagaaactgttcagggtcacacacagtgtattactgaagcggaaaaatatggtccgaagggacaagtgaaagctgtgaatggtgggggagccaaggccaacaaggattctaagcagcaagccgattttgatataactgttgggttatctgagcgcccgccgtggttttgtagtctttgcaatacgaatgcgaccagtaggcagacactgatgctccatgctgaaggaaagaagcacaggggaaaggctcgagctattcatgctgtcaagcaaaaggctatgcagccacaagaatctgctccagatacaaaaccccaacctgaggaaactccaaaaggaatagaagaacctaaattgcaagatgcatcaggagtcgatactgtccataaaatttctgaagcagagaatggaaatttgctgtcaaagaaaaagagaaagctagaagagtccaagaatgatgaatcaagaaaaaagactaaggatactacatcaggggaagtaggcaatgagaaagtgattcagaatgggaaagcagaagcaaatggaaaagagaccaagttgaagaaagatacagaagactacgagaaaaaaattaagtggaagaagttgatttcatcaacattaaaatcgaaagatggagttctgaagatgagaaaactgaagaaactagttctgaatgctattgcagaatctggcataacagaagatgaaggaaaactgagtacgacctttgaggataagatcaattcaagctccagatttagagttgagaacaagtctgttcacttggtggccaaggattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-LYAR zf-met

Protein Analysis

307

Amino Acids

34.12

Weight (kDa)

9.27

Isoelectric Point (pI)

26.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19385
fragaria_vesca FvH4_1g08060
malus_domestica MD02G1085300.v1.1 MD15G1212400.v1.1
prunus_persica Prupe.7G204300_v2.0.a1 Prupe.7G204300_v2.0.a1
pyrus_communis pycom02g06810 pycom15g18870
rosa_chinensis RchiOBHm_Chr2g0094111
rosa_laevigata RLG00000016456
rosa_multiflora Rmu_sc0026373.1_g000002 Rmu_ssc0000149.1_g000002
rosa_roxburghii Rroxscaffold_2G00147470
rosa_rugosa Rorug02G0041000
rosa_samantha Rh2AG088600 Rh2BG088700 Rh2CG091100 Rh2DG087700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 80
AciI CCGC 2 cut(s) 161, 278
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 2 cut(s) 510, 532
AcuI CTGAAG 5 cut(s) 177, 363, 537, 785, 800
AdeI CACNNNGTG 2 cut(s) 147, 910
AfaI GTAC 1 cut(s) 844
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 4 cut(s) 14, 67, 682, 870
AhlI ACTAGT 1 cut(s) 787
AluBI AGCT 5 cut(s) 88, 194, 374, 559, 873
AluI AGCT 5 cut(s) 88, 194, 374, 559, 873
Alw26I GTCTC 2 cut(s) 24, 665
AlwNI CAGNNNCTG 2 cut(s) 328, 812
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 2 cut(s) 216, 912
ApeKI GCWGC 2 cut(s) 235, 403
ApoI RAATTY 2 cut(s) 510, 532
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 50, 119
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 1 cut(s) 173
AxyI CCTNAGG 1 cut(s) 441
BalI TGGCCA 1 cut(s) 914
BbsI GAAGAC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 247, 415
BccI CCATC 1 cut(s) 749
BceAI ACGGC 1 cut(s) 265
BciVI GTATCC 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 24, 665
BcuI ACTAGT 1 cut(s) 787
BfaI CTAG 2 cut(s) 560, 788
BfoI RGCGCY 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 80
BfuI GTATCC 1 cut(s) 595
BisI GCNGC 2 cut(s) 236, 404
BlsI GCNGC 2 cut(s) 237, 405
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 3 cut(s) 321, 472, 494
BpiI GAAGAC 1 cut(s) 702
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 2 cut(s) 405, 859
BpuEI CTTGAG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 3 cut(s) 213, 281, 915
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 315
Bse21I CCTNAGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 631
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 3 cut(s) 213, 281, 915
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 3 cut(s) 261, 432, 830
BseNI ACTGG 1 cut(s) 315
BseXI GCAGC 2 cut(s) 247, 415
BshFI GGCC 2 cut(s) 218, 914
BshVI ATCGAT 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 24, 665
BsmFI GGGAC 1 cut(s) 195
BsmI GAATGC 2 cut(s) 313, 802
BsnI GGCC 2 cut(s) 218, 914
Bso31I GGTCTC 1 cut(s) 665
BsoBI CYCGRG 1 cut(s) 369
Bsp143I GATC 1 cut(s) 861
BspACI CCGC 2 cut(s) 161, 278
BspANI GGCC 2 cut(s) 218, 914
BspCNI CTCAG 3 cut(s) 262, 433, 831
BspDI ATCGAT 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 631
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 3 cut(s) 213, 281, 915
BssMI GATC 1 cut(s) 861
BssT1I CCWWGG 2 cut(s) 213, 915
Bst4CI ACNGT 5 cut(s) 26, 130, 147, 259, 502
Bst6I CTCTTC 1 cut(s) 558
BstC8I GCNNGC 4 cut(s) 82, 86, 240, 278
BstDEI CTNAG 5 cut(s) 231, 270, 441, 597, 839
BstDSI CCRYGG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 1 cut(s) 864
BstMAI GTCTC 2 cut(s) 24, 665
BstMBI GATC 1 cut(s) 861
BstMWI GCNNNNNNNGC 2 cut(s) 81, 380
BstV1I GCAGC 2 cut(s) 247, 415
BstV2I GAAGAC 1 cut(s) 702
Bsu15I ATCGAT 1 cut(s) 99
Bsu36I CCTNAGG 1 cut(s) 441
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 2 cut(s) 218, 914
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 281
BtsIMutI CAGTG 2 cut(s) 152, 326
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 4 cut(s) 82, 86, 240, 278
CaiI CAGNNNCTG 2 cut(s) 328, 812
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 1 cut(s) 99
Csp6I GTAC 1 cut(s) 843
CviAII CATG 2 cut(s) 338, 380
CviQI GTAC 1 cut(s) 843
DdeI CTNAG 5 cut(s) 231, 270, 441, 597, 839
DpnI GATC 1 cut(s) 863
DpnII GATC 1 cut(s) 861
DraIII CACNNNGTG 2 cut(s) 147, 910
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 2 cut(s) 213, 915
Eco31I GGTCTC 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 5 cut(s) 177, 363, 537, 785, 800
Eco81I CCTNAGG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 369
EcoT14I CCWWGG 2 cut(s) 213, 915
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 2 cut(s) 213, 915
FaeI CATG 2 cut(s) 341, 383
FaiI YATR 7 cut(s) 171, 254, 339, 381, 401, 507, 818
FaqI GGGAC 1 cut(s) 195
FatI CATG 2 cut(s) 337, 379
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 236, 404
Fsp4HI GCNGC 2 cut(s) 236, 404
FspBI CTAG 2 cut(s) 560, 788
GlaI GCGC 1 cut(s) 275
GluI GCNGC 2 cut(s) 236, 404
GsuI CTGGAG 2 cut(s) 405, 859
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 218, 914
HhaI GCGC 1 cut(s) 276
Hin1II CATG 2 cut(s) 341, 383
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 7 cut(s) 227, 413, 492, 566, 581, 637, 809
HphI GGTGA 2 cut(s) 50, 119
Hpy166II GTNNAC 1 cut(s) 904
Hpy188I TCNGA 6 cut(s) 177, 271, 517, 642, 765, 795
Hpy188III TCNNGA 5 cut(s) 40, 422, 489, 585, 876
Hpy8I GTNNAC 1 cut(s) 904
HpyAV CCTTC 3 cut(s) 172, 338, 824
HpyCH4III ACNGT 5 cut(s) 26, 130, 147, 259, 502
HpyCH4V TGCA 5 cut(s) 300, 403, 478, 485, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 380
HpyF3I CTNAG 5 cut(s) 231, 270, 441, 597, 839
Hsp92II CATG 2 cut(s) 341, 383
HspAI GCGC 1 cut(s) 274
Kzo9I GATC 1 cut(s) 861
LmnI GCTCC 4 cut(s) 209, 339, 424, 878
Lsp1109I GCAGC 2 cut(s) 247, 415
LweI GCATC 3 cut(s) 321, 472, 494
MaeI CTAG 2 cut(s) 560, 788
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 863
MboI GATC 1 cut(s) 861
MboII GAAGA 8 cut(s) 476, 575, 694, 707, 733, 778, 793, 836
MlsI TGGCCA 1 cut(s) 914
MluCI AATT 5 cut(s) 473, 510, 532, 711, 865
MluNI TGGCCA 1 cut(s) 914
MlyI GAGTC 2 cut(s) 501, 575
MnlI CCTC 4 cut(s) 13, 66, 436, 847
Mox20I TGGCCA 1 cut(s) 914
Mph1103I ATGCAT 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 129
MscI TGGCCA 1 cut(s) 914
MseI TTAA 3 cut(s) 714, 743, 922
Msp20I TGGCCA 1 cut(s) 914
Mva1269I GAATGC 2 cut(s) 313, 802
MwoI GCNNNNNNNGC 2 cut(s) 81, 380
NdeII GATC 1 cut(s) 861
NlaIII CATG 2 cut(s) 341, 383
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 487
PaeR7I CTCGAG 1 cut(s) 369
PaqCI CACCTGC 1 cut(s) 80
PctI GAATGC 2 cut(s) 313, 802
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 5 cut(s) 227, 413, 581, 637, 809
PkrI GCNGC 2 cut(s) 237, 405
PleI GAGTC 2 cut(s) 500, 574
PpsI GAGTC 2 cut(s) 500, 574
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 369
PstNI CAGNNNCTG 2 cut(s) 328, 812
RsaI GTAC 1 cut(s) 844
RsaNI GTAC 1 cut(s) 843
SaqAI TTAA 3 cut(s) 714, 743, 922
SatI GCNGC 2 cut(s) 236, 404
Sau3AI GATC 1 cut(s) 861
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 2 cut(s) 501, 575
SetI ASST 9 cut(s) 74, 90, 196, 376, 442, 472, 561, 851, 875
SfaNI GCATC 3 cut(s) 321, 472, 494
Sfr274I CTCGAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 38, 369
SmoI CTYRAG 2 cut(s) 38, 369
SpeI ACTAGT 1 cut(s) 787
Sse9I AATT 5 cut(s) 473, 510, 532, 711, 865
SsiI CCGC 2 cut(s) 161, 278
SspMI CTAG 2 cut(s) 560, 788
StyI CCWWGG 2 cut(s) 213, 915
TaaI ACNGT 5 cut(s) 26, 130, 147, 259, 502
TaqI TCGA 4 cut(s) 99, 370, 495, 749
TasI AATT 5 cut(s) 473, 510, 532, 711, 865
TfiI GAWTC 5 cut(s) 227, 413, 581, 637, 809
Tru1I TTAA 3 cut(s) 714, 743, 922
Tru9I TTAA 3 cut(s) 714, 743, 922
TscAI CASTG 2 cut(s) 152, 333
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 235, 403
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 368, 594, 723, 843
TspRI CASTG 2 cut(s) 152, 333
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 510, 532
XhoI CTCGAG 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 2 cut(s) 560, 788
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.