Rh2AG088600

LYAR-type C2HC zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013475
Physical Location & Seq
Reverse (-)
7428793 .. 7431135
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG088600.1

Sequence Viewer

Length: 813 bp
ATGTTTGGGAGAGAAACTGTTCAGGGTCACACACAGTGTATTACTGAAGCGGAAAAATATGGTCCGAAGGGACAAGCGAAAGCTGTGAATGGTGGGGGAGCCAAGGCCAACAAGGATTCTAAGCAGCAAGCCGATTTTGATATAACTGTTGGGTTATCTGAGCGCCCGCCGTGGTTTTGTAGTCTTTGCAATACGAATGCGACCAGTAGGCAGACACTGATGCTCCATGCTGAAGGAAAGAAGCACAGGGGAAAGGCTCGAGCTATTCATGCTGCCAAGCAAAAGGCTATGCAGCCACAAGAATCTGCTCCAGATACAAAACCCCAACCTGAGGAAACTCCAAAAGGAATAGAAGAACCTAAATTGCAAGATGCATCAGGAGTCGATACTGTCCATAAAATTTCTGAAGCAGAGAATGGAAATTTGCTGTCAAAGAAAAAGAGAAAGCTAGAAGAGTCCAAGAATGATGAATCAAGAAAAAAGACTAAGGATACTACATCAGGGGAAGTAGGCAATGAGAAAGTGATTCAGAATGGAAAAGCAGAAGCAAATGGAAAAGAGACCAAGTTGAAGAAAGATACAGAAGACTCCGAGAAAAAAATTAAGTGGAAGAAGTTGATTTCATCAACATTAAAATCGAAAGATGGAGTTCTGAAGATGAGAAAACTGAAGAAACTAGTTCTGAATGCTATTGCAGAATCTGGCATAACAGAAGATGAAGGAAAACTGAGTACGACCTTTGAGGATAAGATCAATTCAAGCTCCAGATTTAGAGTTGAGAACAAGTATGTTCACTTGGTGGCCAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-LYAR zf-met

Protein Analysis

270

Amino Acids

29.83

Weight (kDa)

9.48

Isoelectric Point (pI)

30.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-LYAR PF08790 1 - 20 1.8e-07 LYAR-type C2HC zinc finger
zf-met PF12874 58 - 82 9.7e-06 Zinc-finger of C2H2 type
WHD_LYAR PF25879 198 - 269 6.1e-25 LYAR family winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19385
fragaria_vesca FvH4_1g08060
malus_domestica MD02G1085300.v1.1 MD15G1212400.v1.1
prunus_persica Prupe.7G204300_v2.0.a1 Prupe.7G204300_v2.0.a1
pyrus_communis pycom02g06810 pycom15g18870
rosa_chinensis RchiOBHm_Chr2g0094111
rosa_laevigata RLG00000016456
rosa_multiflora Rmu_sc0026373.1_g000002 Rmu_ssc0000149.1_g000002
rosa_roxburghii Rroxscaffold_2G00147470
rosa_rugosa Rorug02G0041000
rosa_samantha Rh2AG088600 Rh2BG088700 Rh2CG091100 Rh2DG087700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 167
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 2 cut(s) 399, 421
AcuI CTGAAG 5 cut(s) 66, 252, 426, 674, 689
AdeI CACNNNGTG 2 cut(s) 36, 799
AfaI GTAC 1 cut(s) 733
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 2 cut(s) 571, 759
AhlI ACTAGT 1 cut(s) 676
AluBI AGCT 4 cut(s) 83, 263, 448, 762
AluI AGCT 4 cut(s) 83, 263, 448, 762
Alw26I GTCTC 1 cut(s) 554
AlwNI CAGNNNCTG 2 cut(s) 217, 701
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 2 cut(s) 105, 801
ApeKI GCWGC 3 cut(s) 124, 272, 292
ApoI RAATTY 2 cut(s) 399, 421
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 258
AvaII GGWCC 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 330
BalI TGGCCA 1 cut(s) 803
BbsI GAAGAC 1 cut(s) 591
BbvI GCAGC 3 cut(s) 136, 259, 304
BccI CCATC 1 cut(s) 638
BceAI ACGGC 1 cut(s) 154
BciVI GTATCC 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 554
BcuI ACTAGT 1 cut(s) 676
BfaI CTAG 2 cut(s) 449, 677
BfoI RGCGCY 1 cut(s) 166
BfuI GTATCC 1 cut(s) 484
BisI GCNGC 3 cut(s) 125, 273, 293
BlsI GCNGC 3 cut(s) 126, 274, 294
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 3 cut(s) 210, 361, 383
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 2 cut(s) 294, 748
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 3 cut(s) 102, 170, 804
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 204
Bse21I CCTNAGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 520
BseDI CCNNGG 3 cut(s) 102, 170, 804
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 3 cut(s) 150, 321, 719
BseNI ACTGG 1 cut(s) 204
BseXI GCAGC 3 cut(s) 136, 259, 304
BshFI GGCC 2 cut(s) 107, 803
BsiHKCI CYCGRG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 84
BsmI GAATGC 2 cut(s) 202, 691
BsnI GGCC 2 cut(s) 107, 803
Bso31I GGTCTC 1 cut(s) 554
BsoBI CYCGRG 1 cut(s) 258
Bsp143I GATC 1 cut(s) 750
BspACI CCGC 2 cut(s) 50, 167
BspANI GGCC 2 cut(s) 107, 803
BspCNI CTCAG 3 cut(s) 151, 322, 720
BspLI GGNNCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 520
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 3 cut(s) 102, 170, 804
BssMI GATC 1 cut(s) 750
BssT1I CCWWGG 2 cut(s) 102, 804
Bst4CI ACNGT 4 cut(s) 19, 36, 148, 391
Bst6I CTCTTC 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 129, 167
BstDEI CTNAG 5 cut(s) 120, 159, 330, 486, 728
BstDSI CCRYGG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 1 cut(s) 753
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 1 cut(s) 750
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 136, 259, 304
BstV2I GAAGAC 1 cut(s) 591
Bsu36I CCTNAGG 1 cut(s) 330
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 2 cut(s) 107, 803
BtgI CCRYGG 1 cut(s) 170
BtsIMutI CAGTG 2 cut(s) 41, 215
Cac8I GCNNGC 2 cut(s) 129, 167
CaiI CAGNNNCTG 2 cut(s) 217, 701
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 732
CviAII CATG 2 cut(s) 227, 269
CviQI GTAC 1 cut(s) 732
DdeI CTNAG 5 cut(s) 120, 159, 330, 486, 728
DpnI GATC 1 cut(s) 752
DpnII GATC 1 cut(s) 750
DraIII CACNNNGTG 2 cut(s) 36, 799
EaeI YGGCCR 1 cut(s) 801
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco130I CCWWGG 2 cut(s) 102, 804
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 5 cut(s) 66, 252, 426, 674, 689
Eco81I CCTNAGG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 102, 804
EcoT22I ATGCAT 1 cut(s) 376
ErhI CCWWGG 2 cut(s) 102, 804
FaeI CATG 2 cut(s) 230, 272
FaiI YATR 8 cut(s) 60, 143, 228, 270, 290, 396, 707, 789
FaqI GGGAC 1 cut(s) 84
FatI CATG 2 cut(s) 226, 268
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 125, 273, 293
Fsp4HI GCNGC 3 cut(s) 125, 273, 293
FspBI CTAG 2 cut(s) 449, 677
GlaI GCGC 1 cut(s) 164
GluI GCNGC 3 cut(s) 125, 273, 293
GsuI CTGGAG 2 cut(s) 294, 748
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 2 cut(s) 107, 803
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 230, 272
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 8 cut(s) 116, 302, 381, 455, 470, 526, 587, 698
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 7 cut(s) 66, 160, 406, 531, 592, 654, 684
Hpy188III TCNNGA 4 cut(s) 311, 378, 474, 765
Hpy8I GTNNAC 1 cut(s) 793
HpyAV CCTTC 3 cut(s) 61, 227, 713
HpyCH4III ACNGT 4 cut(s) 19, 36, 148, 391
HpyCH4V TGCA 5 cut(s) 189, 292, 367, 374, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 5 cut(s) 120, 159, 330, 486, 728
Hsp92II CATG 2 cut(s) 230, 272
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 1 cut(s) 750
LmnI GCTCC 4 cut(s) 98, 228, 313, 767
LpnPI CCDG 9 cut(s) 8, 217, 232, 324, 342, 363, 486, 687, 778
Lsp1109I GCAGC 3 cut(s) 136, 259, 304
LweI GCATC 3 cut(s) 210, 361, 383
MaeI CTAG 2 cut(s) 449, 677
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 752
MboI GATC 1 cut(s) 750
MboII GAAGA 8 cut(s) 365, 464, 583, 596, 622, 667, 682, 725
MlsI TGGCCA 1 cut(s) 803
MluCI AATT 5 cut(s) 362, 399, 421, 600, 754
MluNI TGGCCA 1 cut(s) 803
MlyI GAGTC 3 cut(s) 390, 464, 581
MnlI CCTC 2 cut(s) 325, 736
Mox20I TGGCCA 1 cut(s) 803
Mph1103I ATGCAT 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 18
MscI TGGCCA 1 cut(s) 803
MseI TTAA 3 cut(s) 603, 632, 811
Msp20I TGGCCA 1 cut(s) 803
Mva1269I GAATGC 2 cut(s) 202, 691
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 1 cut(s) 750
NlaIII CATG 2 cut(s) 230, 272
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 376
PaeR7I CTCGAG 1 cut(s) 258
PctI GAATGC 2 cut(s) 202, 691
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 5 cut(s) 116, 302, 470, 526, 698
PkrI GCNGC 3 cut(s) 126, 274, 294
PleI GAGTC 3 cut(s) 389, 463, 581
PpsI GAGTC 3 cut(s) 389, 463, 581
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 62
PspXI VCTCGAGB 1 cut(s) 258
PstNI CAGNNNCTG 2 cut(s) 217, 701
RsaI GTAC 1 cut(s) 733
RsaNI GTAC 1 cut(s) 732
SaqAI TTAA 3 cut(s) 603, 632, 811
SatI GCNGC 3 cut(s) 125, 273, 293
Sau3AI GATC 1 cut(s) 750
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 3 cut(s) 390, 464, 581
SetI ASST 7 cut(s) 85, 265, 331, 361, 450, 740, 764
SfaNI GCATC 3 cut(s) 210, 361, 383
Sfr274I CTCGAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 62
SlaI CTCGAG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
SpeI ACTAGT 1 cut(s) 676
Sse9I AATT 5 cut(s) 362, 399, 421, 600, 754
SsiI CCGC 2 cut(s) 50, 167
SspMI CTAG 2 cut(s) 449, 677
StyI CCWWGG 2 cut(s) 102, 804
TaaI ACNGT 4 cut(s) 19, 36, 148, 391
TaqI TCGA 3 cut(s) 259, 384, 638
TasI AATT 5 cut(s) 362, 399, 421, 600, 754
TfiI GAWTC 5 cut(s) 116, 302, 470, 526, 698
Tru1I TTAA 3 cut(s) 603, 632, 811
Tru9I TTAA 3 cut(s) 603, 632, 811
TscAI CASTG 2 cut(s) 41, 222
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 3 cut(s) 124, 272, 292
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 4 cut(s) 257, 483, 612, 732
TspRI CASTG 2 cut(s) 41, 222
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 2 cut(s) 399, 421
XhoI CTCGAG 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 2 cut(s) 449, 677
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.