MD02G1085300.v1.1

LYAR-type C2HC zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013475
Physical Location & Seq
Reverse (-)
6687528 .. 6690159
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1085300.v1.1.491

Sequence Viewer

Length: 927 bp
ATGGTGTGGTTTCAGTGCGAGGATTGCGGGGACAACCTCAAGAAACCCAAGGTTCTGGGTCACTTCAAGTGCTGCTCTGCACGAAAGTTTTCGTGCATTGATTGCGGAGAGACATTTGGGAGAGAAACCGTTCAGGGTCACACACAATGTATGACTGAGGCGGAAAAATACGGTCCCAAGGGGGCACAAGGGAAACCTTTGAATGGTGGGGGAGCCAAGCCCAACAAGGACGGAAAGCAGCAACCCGATTTTGATATTACTGTCGGGTTGACTAAGCGATTTCCATGGTTTTGCAGTCTTTGCAATACTAAAGCTACCAGTGAGCAGACCCTGATGCTGCATGCTGAAGGAAAGAAGCACAGGGCAAAAGCCCGAGCAATCCATGCTGCAAAGCAACAACCTAAGCAGCCGGAAGAATCTGTTCCGGATACAAAACCTCCACCCGAGGACACACCAAAGGGTGAAGTTCTTGAGAATAAACAAATAGAGGAACCTAAGTCGCATGATGCTTCTAGGGTCAATCCTGAGCATAAAATTTCTGAAGCAGAGAATGATGCCTTACTGAAAAATAAAAAGAGAAAGCTTGACGCATCCAAGAACGATGAATCAACAAAGAAGACTAAGGATAGTACATCGTATGAAGTAGGAAATGGCAAAGTGGTTCAGAGTGGGAAGACAGAAGCAAATGGGAAAGAGGGAGAACTCACTACGAATATAAAGTGGAAGAAGTTGATTACATCAACCCTAAAATTGAATGATGGAGTCCTGAAGATGAGGAAATTGAAAAAACTTGTGATGAAGGCTCTTGAAGAATCCGGAATAACAGATGACGAAACCAAATTGAGTAATATGTTTGAGCACAAGATCAGTTCAAGTTCCAAATTTAGAGTCGAGAACAAGTATGTTCATTTGGCGGCCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-LYAR zf-met

Protein Analysis

309

Amino Acids

34.3

Weight (kDa)

9.17

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-LYAR PF08790 30 - 57 2.2e-14 LYAR-type C2HC zinc finger
zf-met PF12874 96 - 120 1.4e-06 Zinc-finger of C2H2 type
WHD_LYAR PF25879 237 - 307 2e-24 LYAR family winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19385
fragaria_vesca FvH4_1g08060
malus_domestica MD02G1085300.v1.1 MD15G1212400.v1.1
prunus_persica Prupe.7G204300_v2.0.a1 Prupe.7G204300_v2.0.a1
pyrus_communis pycom02g06810 pycom15g18870
rosa_chinensis RchiOBHm_Chr2g0094111
rosa_laevigata RLG00000016456
rosa_multiflora Rmu_sc0026373.1_g000002 Rmu_ssc0000149.1_g000002
rosa_roxburghii Rroxscaffold_2G00147470
rosa_rugosa Rorug02G0041000
rosa_samantha Rh2AG088600 Rh2BG088700 Rh2CG091100 Rh2DG087700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 424, 815
AciI CCGC 4 cut(s) 27, 105, 161, 914
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 2 cut(s) 534, 881
AcuI CTGAAG 3 cut(s) 366, 561, 788
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 6 cut(s) 67, 202, 754, 784, 809, 873
AluBI AGCT 2 cut(s) 314, 583
AluI AGCT 2 cut(s) 314, 583
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 1 cut(s) 104
AlwNI CAGNNNCTG 1 cut(s) 331
Ama87I CYCGRG 2 cut(s) 372, 443
Aor13HI TCCGGA 2 cut(s) 424, 815
AoxI GGCC 1 cut(s) 915
ApeKI GCWGC 5 cut(s) 72, 238, 337, 386, 406
ApoI RAATTY 2 cut(s) 534, 881
ArsI GACNNNNNNTTYG 2 cut(s) 873, 905
Asp700I GAANNNNTTC 3 cut(s) 88, 129, 420
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 473
AvaI CYCGRG 2 cut(s) 372, 443
AvaII GGWCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 623, 680
Bbv12I GWGCWC 1 cut(s) 861
BbvI GCAGC 5 cut(s) 59, 250, 324, 373, 418
BccI CCATC 1 cut(s) 752
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 513
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 6 cut(s) 73, 239, 338, 387, 407, 915
BlsI GCNGC 6 cut(s) 74, 240, 339, 388, 408, 916
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 2 cut(s) 372, 443
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 175, 214, 492
BmsI GCATC 4 cut(s) 324, 496, 544, 599
BpiI GAAGAC 2 cut(s) 623, 680
Bpu10I CCTNAGC 2 cut(s) 402, 525
BpuEI CTTGAG 2 cut(s) 23, 491
BsaJI CCNNGG 5 cut(s) 48, 177, 284, 444, 918
BsaWI WCCGGW 2 cut(s) 424, 815
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 318
BseAI TCCGGA 2 cut(s) 424, 815
BseDI CCNNGG 5 cut(s) 48, 177, 284, 444, 918
BseGI GGATG 1 cut(s) 590
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 147, 516
BseNI ACTGG 1 cut(s) 318
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 5 cut(s) 59, 250, 324, 373, 418
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 917
BsiHKAI GWGCWC 1 cut(s) 861
BsiHKCI CYCGRG 2 cut(s) 372, 443
BsiSI CCGG 3 cut(s) 410, 425, 816
BslFI GGGAC 2 cut(s) 44, 159
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 44, 159
BsnI GGCC 1 cut(s) 917
BsoBI CYCGRG 2 cut(s) 372, 443
Bsp1286I GDGCHC 2 cut(s) 187, 861
Bsp13I TCCGGA 2 cut(s) 424, 815
Bsp143I GATC 1 cut(s) 864
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 4 cut(s) 27, 105, 161, 914
BspANI GGCC 1 cut(s) 917
BspCNI CTCAG 2 cut(s) 148, 517
BspEI TCCGGA 2 cut(s) 424, 815
BspLI GGNNCC 3 cut(s) 175, 214, 492
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 5 cut(s) 48, 177, 284, 444, 918
BssMI GATC 1 cut(s) 864
BssT1I CCWWGG 4 cut(s) 48, 177, 284, 918
Bst4CI ACNGT 3 cut(s) 130, 173, 262
BstAPI GCANNNNNTGC 3 cut(s) 102, 300, 383
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 6 cut(s) 156, 273, 402, 495, 525, 621
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 590
BstKTI GATC 1 cut(s) 867
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 864
BstMWI GCNNNNNNNGC 4 cut(s) 24, 102, 300, 383
BstNSI RCATGY 1 cut(s) 344
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 5 cut(s) 59, 250, 324, 373, 418
BstV2I GAAGAC 2 cut(s) 623, 680
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 1 cut(s) 917
BtgI CCRYGG 1 cut(s) 284
BtsCI GGATG 1 cut(s) 590
BtsIMutI CAGTG 2 cut(s) 20, 325
Cac8I GCNNGC 1 cut(s) 342
CaiI CAGNNNCTG 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 596
Csp6I GTAC 1 cut(s) 630
CviAII CATG 4 cut(s) 285, 341, 383, 503
CviJI RGCY 8 cut(s) 215, 220, 314, 371, 409, 583, 803, 917
CviKI_1 RGCY 8 cut(s) 215, 220, 314, 371, 409, 583, 803, 917
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 6 cut(s) 156, 273, 402, 495, 525, 621
DpnI GATC 1 cut(s) 866
DpnII GATC 1 cut(s) 864
EaeI YGGCCR 1 cut(s) 915
EciI GGCGGA 1 cut(s) 176
Eco130I CCWWGG 4 cut(s) 48, 177, 284, 918
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 3 cut(s) 366, 561, 788
Eco88I CYCGRG 2 cut(s) 372, 443
EcoT14I CCWWGG 4 cut(s) 48, 177, 284, 918
ErhI CCWWGG 4 cut(s) 48, 177, 284, 918
FaeI CATG 4 cut(s) 288, 344, 386, 506
FaqI GGGAC 2 cut(s) 44, 159
FatI CATG 4 cut(s) 284, 340, 382, 502
FauI CCCGC 1 cut(s) 20
Fnu4HI GCNGC 6 cut(s) 73, 239, 338, 387, 407, 915
FokI GGATG 1 cut(s) 577
Fsp4HI GCNGC 6 cut(s) 73, 239, 338, 387, 407, 915
FspBI CTAG 1 cut(s) 513
GluI GCNGC 6 cut(s) 73, 239, 338, 387, 407, 915
HaeIII GGCC 1 cut(s) 917
HapII CCGG 3 cut(s) 410, 425, 816
HgaI GACGC 1 cut(s) 596
Hin1II CATG 4 cut(s) 288, 344, 386, 506
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 5 cut(s) 416, 605, 762, 812, 888
HpaII CCGG 3 cut(s) 410, 425, 816
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 2 cut(s) 541, 666
Hpy188III TCNNGA 8 cut(s) 40, 425, 470, 524, 766, 806, 816, 892
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 2 cut(s) 341, 793
HpyCH4III ACNGT 3 cut(s) 130, 173, 262
HpyCH4V TGCA 6 cut(s) 80, 96, 294, 303, 340, 389
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 102, 300, 383
HpyF3I CTNAG 6 cut(s) 156, 273, 402, 495, 525, 621
Hsp92II CATG 4 cut(s) 288, 344, 386, 506
Kpn2I TCCGGA 2 cut(s) 424, 815
Kzo9I GATC 1 cut(s) 864
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 5 cut(s) 59, 250, 324, 373, 418
LweI GCATC 4 cut(s) 324, 496, 544, 599
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 2 cut(s) 59, 137
MalI GATC 1 cut(s) 866
MboI GATC 1 cut(s) 864
MboII GAAGA 6 cut(s) 425, 628, 685, 736, 781, 821
MhlI GDGCHC 2 cut(s) 187, 861
MluCI AATT 5 cut(s) 534, 749, 779, 839, 881
MlyI GAGTC 2 cut(s) 771, 897
MnlI CCTC 8 cut(s) 13, 47, 151, 439, 447, 481, 688, 768
MroI TCCGGA 2 cut(s) 424, 815
MroXI GAANNNNTTC 3 cut(s) 88, 129, 420
MspI CCGG 3 cut(s) 410, 425, 816
MwoI GCNNNNNNNGC 4 cut(s) 24, 102, 300, 383
NcoI CCATGG 1 cut(s) 284
NdeII GATC 1 cut(s) 864
NlaIII CATG 4 cut(s) 288, 344, 386, 506
NlaIV GGNNCC 3 cut(s) 175, 214, 492
NmuCI GTSAC 2 cut(s) 59, 137
NspI RCATGY 1 cut(s) 344
PaeI GCATGC 1 cut(s) 344
PdmI GAANNNNTTC 3 cut(s) 88, 129, 420
PfeI GAWTC 3 cut(s) 416, 605, 812
PkrI GCNGC 6 cut(s) 74, 240, 339, 388, 408, 916
PleI GAGTC 2 cut(s) 770, 896
PpsI GAGTC 2 cut(s) 770, 896
PspN4I GGNNCC 3 cut(s) 175, 214, 492
PspPI GGNCC 1 cut(s) 173
PstNI CAGNNNCTG 1 cut(s) 331
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
SatI GCNGC 6 cut(s) 73, 239, 338, 387, 407, 915
Sau3AI GATC 1 cut(s) 864
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 2 cut(s) 771, 897
SduI GDGCHC 2 cut(s) 187, 861
SetI ASST 8 cut(s) 39, 54, 199, 316, 403, 439, 496, 585
SfaNI GCATC 4 cut(s) 324, 496, 544, 599
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 38, 470
SmoI CTYRAG 2 cut(s) 38, 470
SphI GCATGC 1 cut(s) 344
Sse9I AATT 5 cut(s) 534, 749, 779, 839, 881
SsiI CCGC 4 cut(s) 27, 105, 161, 914
SspMI CTAG 1 cut(s) 513
StyI CCWWGG 4 cut(s) 48, 177, 284, 918
TaaI ACNGT 3 cut(s) 130, 173, 262
TaqI TCGA 1 cut(s) 891
TasI AATT 5 cut(s) 534, 749, 779, 839, 881
TatI WGTACW 1 cut(s) 629
TauI GCSGC 1 cut(s) 917
TfiI GAWTC 3 cut(s) 416, 605, 812
TscAI CASTG 2 cut(s) 20, 325
TseFI GTSAC 2 cut(s) 59, 137
TseI GCWGC 5 cut(s) 72, 238, 337, 386, 406
Tsp45I GTSAC 2 cut(s) 59, 137
TspDTI ATGAA 4 cut(s) 618, 654, 812, 896
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 2 cut(s) 20, 325
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 534, 881
XceI RCATGY 1 cut(s) 344
XmnI GAANNNNTTC 3 cut(s) 88, 129, 420
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.