Rmu_sc0026373.1_g000002

LYAR-type C2HC zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026373.1
OG0013475
Physical Location & Seq
Forward (+)
2010 .. 3825
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026373.1_g000002.1.cds

Sequence Viewer

Length: 492 bp
atggtgtggtttcaatgcgaggactgtggagacaatctcaagaaacccaagttgcctcaccacttcaacacctgctctgctcgcaagctttcgtgtatcgattgtggtgagatgtttgggagagaaactgttcagggtcacacacagtgtattactgaagcggaaaaatatggtccgaagggacaagtgaaagctgtgaatggtgggggagccaaggccaacaaggattctaagcagcaagccgattttgatataactgttgggttatctgagcgcccgccgtggatggaaaccatgataaaagaatacagctgttttaaagatggagttctgaagatgagaaaactgaagaaactagttctgaatgctattgcagaatctggcataacagaagatgaaggaaaactgagtacgacctttgaggataagatcaattcaagctccagatttagagttgagaacaagtatgttcacttggtggccaaggattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-LYAR zf-met

Protein Analysis

163

Amino Acids

18.3

Weight (kDa)

8.42

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19385
fragaria_vesca FvH4_1g08060
malus_domestica MD02G1085300.v1.1 MD15G1212400.v1.1
prunus_persica Prupe.7G204300_v2.0.a1 Prupe.7G204300_v2.0.a1
pyrus_communis pycom02g06810 pycom15g18870
rosa_chinensis RchiOBHm_Chr2g0094111
rosa_laevigata RLG00000016456
rosa_multiflora Rmu_sc0026373.1_g000002 Rmu_ssc0000149.1_g000002
rosa_roxburghii Rroxscaffold_2G00147470
rosa_rugosa Rorug02G0041000
rosa_samantha Rh2AG088600 Rh2BG088700 Rh2CG091100 Rh2DG087700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 80
AciI CCGC 2 cut(s) 161, 278
AcoI YGGCCR 1 cut(s) 480
AcuI CTGAAG 3 cut(s) 177, 353, 368
AdeI CACNNNGTG 2 cut(s) 147, 478
AfaI GTAC 1 cut(s) 412
AgsI TTSAA 3 cut(s) 14, 67, 438
AhlI ACTAGT 1 cut(s) 355
AluBI AGCT 4 cut(s) 88, 194, 312, 441
AluI AGCT 4 cut(s) 88, 194, 312, 441
Alw26I GTCTC 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 380
AoxI GGCC 2 cut(s) 216, 480
ApeKI GCWGC 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 50, 119
AvaII GGWCC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 482
BbvI GCAGC 1 cut(s) 247
BccI CCATC 2 cut(s) 280, 317
BceAI ACGGC 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 24
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 213, 281, 483
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 3 cut(s) 213, 281, 483
BseGI GGATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 261, 398
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 2 cut(s) 218, 482
BshVI ATCGAT 1 cut(s) 99
BslFI GGGAC 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 195
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 2 cut(s) 218, 482
Bsp143I GATC 1 cut(s) 429
BspACI CCGC 2 cut(s) 161, 278
BspANI GGCC 2 cut(s) 218, 482
BspCNI CTCAG 2 cut(s) 262, 399
BspDI ATCGAT 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 80
BssECI CCNNGG 3 cut(s) 213, 281, 483
BssMI GATC 1 cut(s) 429
BssT1I CCWWGG 2 cut(s) 213, 483
Bst4CI ACNGT 4 cut(s) 26, 130, 147, 259
BstC8I GCNNGC 4 cut(s) 82, 86, 240, 278
BstDEI CTNAG 3 cut(s) 231, 270, 407
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 1 cut(s) 432
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 1 cut(s) 429
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 247
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 2 cut(s) 218, 482
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 152
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 4 cut(s) 82, 86, 240, 278
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 1 cut(s) 99
Csp6I GTAC 1 cut(s) 411
CviAII CATG 1 cut(s) 295
CviJI RGCY 8 cut(s) 88, 194, 212, 218, 242, 312, 441, 482
CviKI_1 RGCY 8 cut(s) 88, 194, 212, 218, 242, 312, 441, 482
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 3 cut(s) 231, 270, 407
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
DraI TTTAAA 1 cut(s) 319
DraIII CACNNNGTG 2 cut(s) 147, 478
EaeI YGGCCR 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 213, 483
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 3 cut(s) 177, 353, 368
EcoT14I CCWWGG 2 cut(s) 213, 483
ErhI CCWWGG 2 cut(s) 213, 483
FaeI CATG 1 cut(s) 298
FaiI YATR 5 cut(s) 171, 254, 296, 386, 468
FaqI GGGAC 1 cut(s) 195
FatI CATG 1 cut(s) 294
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 427
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 218, 482
HhaI GCGC 1 cut(s) 276
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 2 cut(s) 227, 377
HphI GGTGA 2 cut(s) 50, 119
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 4 cut(s) 177, 271, 333, 363
Hpy188III TCNNGA 2 cut(s) 40, 444
Hpy8I GTNNAC 1 cut(s) 472
HpyAV CCTTC 2 cut(s) 172, 392
HpyCH4III ACNGT 4 cut(s) 26, 130, 147, 259
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 3 cut(s) 231, 270, 407
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 274
Kzo9I GATC 1 cut(s) 429
LmnI GCTCC 2 cut(s) 209, 446
LpnPI CCDG 4 cut(s) 85, 119, 366, 457
Lsp1109I GCAGC 1 cut(s) 247
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 431
MboI GATC 1 cut(s) 429
MboII GAAGA 3 cut(s) 346, 361, 404
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 1 cut(s) 433
MluNI TGGCCA 1 cut(s) 482
MnlI CCTC 3 cut(s) 13, 66, 415
Mox20I TGGCCA 1 cut(s) 482
MroXI GAANNNNTTC 1 cut(s) 129
MscI TGGCCA 1 cut(s) 482
MseI TTAA 2 cut(s) 318, 490
Msp20I TGGCCA 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 370
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 1 cut(s) 429
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 80
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 2 cut(s) 227, 377
PkrI GCNGC 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 173
PstNI CAGNNNCTG 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 312
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 318, 490
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 1 cut(s) 173
SetI ASST 6 cut(s) 74, 90, 196, 314, 419, 443
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SpeI ACTAGT 1 cut(s) 355
Sse9I AATT 1 cut(s) 433
SsiI CCGC 2 cut(s) 161, 278
SspMI CTAG 1 cut(s) 356
StyI CCWWGG 2 cut(s) 213, 483
TaaI ACNGT 4 cut(s) 26, 130, 147, 259
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 433
TfiI GAWTC 2 cut(s) 227, 377
Tru1I TTAA 2 cut(s) 318, 490
Tru9I TTAA 2 cut(s) 318, 490
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 411
TspRI CASTG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.