Prupe.7G204300_v2.0.a1

LYAR-type C2HC zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013475
Physical Location & Seq
Forward (+)
18929160 .. 18931733
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G204300.1

Sequence Viewer

Length: 906 bp
ATGGTGTGGTTTCAGTGTGAGGATTGTGGAGACAACCTCAAGAAACCCAAGTTGCCGGGTCACTTCAGGTCCTGCTCTGCTCGCAAGTTATCATGCATTGATTGCGGGGAGATGTTTGGGCAAGAAAGCGTTCAGAGTCACACACAATGCATTACTGAGGCAGAAAAATATGGTCCAAAGGGACAAGGGAAAGCTTTGAATGGTGGGGGAGCCAAGCCCAACAAGGATTCAAAGCAGCAGCCTGATTTTGATATTACTGTTGGGTTATCCAAACGCTTTCCGTGGTTTTGTAGTCTTTGCAATACTAAAGCTACTAGTGAGCAGACCCTGCTGCTCCATGCCGAAGGAAAGAAGCACAGGGCAAGAGCCCGAGCAATCCACGCTGCAAAGCAACAGCCTGAGCAGCCGGAAGAATCTGCCCTGGATACAAAACCTACACCTGAGAATAAACAAATTGAGGAACCTAAATTGCAGGATGCATCTAGAGTCAATGTGGAGCAAAACAGTTCTGAAGCAGGGAATGGAACTTTGTTGTCAGAGAAAAAGAGAAAACTTGATGCATCCAAGAATGATGAATCAAGGAAGACGACTAGGGATAATACATGGAAGACAGAAGCAAATGGAAAGGAGAGTCAGTTGGAGAAAGATAAGTTGGTGGAATCTAGCTCTGCTAAGAATGAATCCAATATGAAAATAAATTGGAAGAAGTTGATCACATCAACCTTAAAATCGAATGACGGAGTTCTAAAGATGAGGAAATTGAAAAAACTTGTTCTGAAGGCTATTGAAGAATCGGGCAGAACAGATGATGAAGCCAAATTGAGTGATATGCTTGATCACAAGATCAATTCAAGCTCCAGATTTAAAGTTGAGAACAAGCATGTTCATTTGGTGGCCAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-LYAR zf-met

Protein Analysis

302

Amino Acids

33.69

Weight (kDa)

9.15

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19385
fragaria_vesca FvH4_1g08060
malus_domestica MD02G1085300.v1.1 MD15G1212400.v1.1
prunus_persica Prupe.7G204300_v2.0.a1 Prupe.7G204300_v2.0.a1
pyrus_communis pycom02g06810 pycom15g18870
rosa_chinensis RchiOBHm_Chr2g0094111
rosa_laevigata RLG00000016456
rosa_multiflora Rmu_sc0026373.1_g000002 Rmu_ssc0000149.1_g000002
rosa_roxburghii Rroxscaffold_2G00147470
rosa_rugosa Rorug02G0041000
rosa_samantha Rh2AG088600 Rh2BG088700 Rh2CG091100 Rh2DG087700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 894
AcuI CTGAAG 3 cut(s) 49, 531, 797
AgsI TTSAA 5 cut(s) 199, 231, 763, 788, 852
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 1 cut(s) 420
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AluBI AGCT 4 cut(s) 194, 311, 666, 855
AluI AGCT 4 cut(s) 194, 311, 666, 855
Alw26I GTCTC 1 cut(s) 24
AlwNI CAGNNNCTG 2 cut(s) 72, 328
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 1 cut(s) 894
ApeKI GCWGC 5 cut(s) 235, 238, 331, 383, 403
Asp700I GAANNNNTTC 1 cut(s) 129
AspS9I GGNCC 2 cut(s) 69, 173
AsuC2I CCSGG 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 2 cut(s) 69, 173
BalI TGGCCA 1 cut(s) 896
BanII GRGCYC 1 cut(s) 370
BbsI GAAGAC 2 cut(s) 590, 614
BbvI GCAGC 5 cut(s) 247, 250, 318, 370, 415
BciT130I CCWGG 1 cut(s) 422
BciVI GTATCC 1 cut(s) 418
BclI TGATCA 2 cut(s) 711, 835
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 24
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 4 cut(s) 315, 483, 591, 663
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 5 cut(s) 236, 239, 332, 384, 404
BlsI GCNGC 5 cut(s) 237, 240, 333, 385, 405
Bme1390I CCNGG 2 cut(s) 57, 422
Bme18I GGWCC 2 cut(s) 69, 173
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 2 cut(s) 69, 173
BmiI GGNNCC 2 cut(s) 211, 462
BmrFI CCNGG 2 cut(s) 57, 422
BmsI GCATC 4 cut(s) 466, 488, 547, 569
BpiI GAAGAC 2 cut(s) 590, 614
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 841
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 281, 420, 897
BsaXI ACNNNNNCTCC 2 cut(s) 620, 650
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 3 cut(s) 281, 420, 897
BseGI GGATG 2 cut(s) 481, 560
BseMII CTCAG 3 cut(s) 147, 390, 432
BseXI GCAGC 5 cut(s) 247, 250, 318, 370, 415
BshFI GGCC 1 cut(s) 896
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 2 cut(s) 56, 407
BslFI GGGAC 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 896
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 3 cut(s) 711, 835, 843
BspACI CCGC 1 cut(s) 105
BspANI GGCC 1 cut(s) 896
BspCNI CTCAG 3 cut(s) 148, 391, 433
BspLI GGNNCC 2 cut(s) 211, 462
BssECI CCNNGG 3 cut(s) 281, 420, 897
BssMI GATC 3 cut(s) 711, 835, 843
BssT1I CCWWGG 1 cut(s) 897
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 2 cut(s) 259, 506
BstAPI GCANNNNNTGC 2 cut(s) 102, 328
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 4 cut(s) 156, 399, 441, 672
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 2 cut(s) 481, 560
BstKTI GATC 3 cut(s) 714, 838, 846
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 711, 835, 843
BstMWI GCNNNNNNNGC 5 cut(s) 81, 102, 328, 380, 403
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 884
BstSCI CCNGG 2 cut(s) 55, 420
BstV1I GCAGC 5 cut(s) 247, 250, 318, 370, 415
BstV2I GAAGAC 2 cut(s) 590, 614
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 1 cut(s) 896
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 2 cut(s) 481, 560
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 82
CaiI CAGNNNCTG 2 cut(s) 72, 328
Cfr13I GGNCC 2 cut(s) 69, 173
CviAII CATG 4 cut(s) 93, 338, 603, 881
DdeI CTNAG 4 cut(s) 156, 399, 441, 672
DpnI GATC 3 cut(s) 713, 837, 845
DpnII GATC 3 cut(s) 711, 835, 843
DraI TTTAAA 1 cut(s) 865
EaeI YGGCCR 1 cut(s) 894
Eco130I CCWWGG 1 cut(s) 897
Eco24I GRGCYC 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 69, 173
Eco57I CTGAAG 3 cut(s) 49, 531, 797
Eco88I CYCGRG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 897
EcoT22I ATGCAT 4 cut(s) 98, 152, 481, 562
EcoT38I GRGCYC 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 897
FaeI CATG 4 cut(s) 96, 341, 606, 884
FaiI YATR 7 cut(s) 94, 171, 339, 604, 689, 830, 882
FaqI GGGAC 1 cut(s) 195
FatI CATG 4 cut(s) 92, 337, 602, 880
FauI CCCGC 1 cut(s) 98
FbaI TGATCA 2 cut(s) 711, 835
Fnu4HI GCNGC 5 cut(s) 236, 239, 332, 384, 404
FokI GGATG 2 cut(s) 488, 547
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 5 cut(s) 236, 239, 332, 384, 404
FspBI CTAG 4 cut(s) 315, 483, 591, 663
GluI GCNGC 5 cut(s) 236, 239, 332, 384, 404
GsuI CTGGAG 1 cut(s) 841
HaeIII GGCC 1 cut(s) 896
HapII CCGG 2 cut(s) 56, 407
Hin1II CATG 4 cut(s) 96, 341, 606, 884
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 9 cut(s) 136, 227, 413, 486, 575, 631, 659, 680, 791
HpaII CCGG 2 cut(s) 56, 407
Hpy188I TCNGA 4 cut(s) 135, 511, 538, 777
Hpy188III TCNNGA 3 cut(s) 40, 483, 858
HpyAV CCTTC 2 cut(s) 338, 772
HpyCH4III ACNGT 2 cut(s) 259, 506
HpyCH4V TGCA 7 cut(s) 96, 150, 300, 386, 472, 479, 560
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 102, 328, 380, 403
HpyF3I CTNAG 4 cut(s) 156, 399, 441, 672
Hsp92II CATG 4 cut(s) 96, 341, 606, 884
Ksp22I TGATCA 2 cut(s) 711, 835
Kzo9I GATC 3 cut(s) 711, 835, 843
LmnI GCTCC 4 cut(s) 209, 339, 496, 860
Lsp1109I GCAGC 5 cut(s) 247, 250, 318, 370, 415
LweI GCATC 4 cut(s) 466, 488, 547, 569
MaeI CTAG 4 cut(s) 315, 483, 591, 663
MaeIII GTNAC 2 cut(s) 59, 137
MalI GATC 3 cut(s) 713, 837, 845
MboI GATC 3 cut(s) 711, 835, 843
MboII GAAGA 5 cut(s) 422, 595, 619, 715, 800
MhlI GDGCHC 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 6 cut(s) 453, 467, 697, 758, 818, 847
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 3 cut(s) 145, 495, 640
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 5 cut(s) 13, 47, 151, 451, 747
Mox20I TGGCCA 1 cut(s) 896
Mph1103I ATGCAT 4 cut(s) 98, 152, 481, 562
MroXI GAANNNNTTC 1 cut(s) 129
MscI TGGCCA 1 cut(s) 896
MseI TTAA 3 cut(s) 725, 864, 904
Msp20I TGGCCA 1 cut(s) 896
MspI CCGG 2 cut(s) 56, 407
MspR9I CCNGG 2 cut(s) 57, 422
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 5 cut(s) 81, 102, 328, 380, 403
NciI CCSGG 1 cut(s) 57
NdeII GATC 3 cut(s) 711, 835, 843
NlaIII CATG 4 cut(s) 96, 341, 606, 884
NlaIV GGNNCC 2 cut(s) 211, 462
NmuCI GTSAC 2 cut(s) 59, 137
NsiI ATGCAT 4 cut(s) 98, 152, 481, 562
NspI RCATGY 1 cut(s) 884
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 6 cut(s) 227, 413, 575, 659, 680, 791
PkrI GCNGC 5 cut(s) 237, 240, 333, 385, 405
PleI GAGTC 3 cut(s) 144, 494, 639
PpsI GAGTC 3 cut(s) 144, 494, 639
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 211, 462
PspPI GGNCC 2 cut(s) 69, 173
PspPPI RGGWCCY 1 cut(s) 69
PstNI CAGNNNCTG 2 cut(s) 72, 328
SaqAI TTAA 3 cut(s) 725, 864, 904
SatI GCNGC 5 cut(s) 236, 239, 332, 384, 404
Sau3AI GATC 3 cut(s) 711, 835, 843
Sau96I GGNCC 2 cut(s) 69, 173
SchI GAGTC 3 cut(s) 145, 495, 640
ScrFI CCNGG 2 cut(s) 57, 422
SduI GDGCHC 1 cut(s) 370
SfaNI GCATC 4 cut(s) 466, 488, 547, 569
SinI GGWCC 2 cut(s) 69, 173
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 6 cut(s) 453, 467, 697, 758, 818, 847
SsiI CCGC 1 cut(s) 105
SspMI CTAG 4 cut(s) 315, 483, 591, 663
StyD4I CCNGG 2 cut(s) 55, 420
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 2 cut(s) 259, 506
TaqI TCGA 1 cut(s) 731
TasI AATT 6 cut(s) 453, 467, 697, 758, 818, 847
TfiI GAWTC 6 cut(s) 227, 413, 575, 659, 680, 791
Tru1I TTAA 3 cut(s) 725, 864, 904
Tru9I TTAA 3 cut(s) 725, 864, 904
TscAI CASTG 1 cut(s) 20
TseFI GTSAC 2 cut(s) 59, 137
TseI GCWGC 5 cut(s) 235, 238, 331, 383, 403
Tsp45I GTSAC 2 cut(s) 59, 137
TspDTI ATGAA 5 cut(s) 588, 693, 704, 825, 875
TspGWI ACGGA 2 cut(s) 270, 753
TspRI CASTG 1 cut(s) 20
VpaK11BI GGWCC 2 cut(s) 69, 173
XbaI TCTAGA 1 cut(s) 482
XceI RCATGY 1 cut(s) 884
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 4 cut(s) 315, 483, 591, 663
Zsp2I ATGCAT 4 cut(s) 98, 152, 481, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.