pycom02g06810

LYAR-type C2HC zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013475
Physical Location & Seq
Reverse (-)
4719147 .. 4721091
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g06810.5

Sequence Viewer

Length: 927 bp
ATGGTGTGGTTTCAGTGCGAGGATTGTGGGGACAACCTTAAGAAACCCAAGGTTCTGGGTCACTTCAAGTGCTGCTCTGCTCGAAAGTTTTCGTGCATTGATTGCGGAGAGACATTTGGGAGAGAAACCGTTCAGGGTCACACACAATGTATGACTGAGGCGGAAAAATACGGTCCCAAGGGCGGACAAGGGAAACCTTTGAATGGTGGGGTAGCCAAGCCCAGCAAGGATGGAAAGCAGCAACCCGATTTTGATATTACTGTCGGGTTGACTAAGCGATTTCCATGGTTTTGTAGTCTTTGCAATACTAAAGCTACCAGTGAGCAGACCCTCCTGCTGCATGCTGATGGAAAGAAGCACAGGGCAAAAGCCCGAGCTATCCATGCTGCAAAGCAACAACCTAAGCAGCCGGAAGAATCTGTTCTGGATACAAAACCTCCACCCGAGGACACGCCAAAGGGTGAAGTTCTTGAGAATAAACAAATAGAGGAACCTAAGTCACATGATGCGTCTAGGGTCAATCCCAAGCATAAAATTTCCGAAGCAGAGAATGATGCCTTACTGAAAAATAAAAAGAGAAAGCTTGACGCATCCAAGAACGATGAATCAACAAAGAAGACTAAGGATAGTACATCATATGAAGTAGGAAATGGCAAAGTGGTTCAGAGTGGGAAGAAAGAAGCAAATGGGAAAGAGGGAGAACTCACTACGAATATAAAGTGGAAGAAGTTGATTACATCAACCCTAAAATCGAATGATGGAGTCCTGAAGATGAGGAAATTGAAAAAACTTGTGATGAAGGCTCATGAAGAATCCGGAGTAACAGATGACGAAACCAAACTGAGTAATATGTTTGAGCACAAGATCAATTCAAGTTCCAAATTTAGAGTCGAGAACAAGTATGTTCATTTGGCGGCCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-LYAR zf-met

Protein Analysis

309

Amino Acids

34.32

Weight (kDa)

9.31

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19385
fragaria_vesca FvH4_1g08060
malus_domestica MD02G1085300.v1.1 MD15G1212400.v1.1
prunus_persica Prupe.7G204300_v2.0.a1 Prupe.7G204300_v2.0.a1
pyrus_communis pycom02g06810 pycom15g18870
rosa_chinensis RchiOBHm_Chr2g0094111
rosa_laevigata RLG00000016456
rosa_multiflora Rmu_sc0026373.1_g000002 Rmu_ssc0000149.1_g000002
rosa_roxburghii Rroxscaffold_2G00147470
rosa_rugosa Rorug02G0041000
rosa_samantha Rh2AG088600 Rh2BG088700 Rh2CG091100 Rh2DG087700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 815
AciI CCGC 4 cut(s) 105, 161, 183, 914
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 2 cut(s) 534, 881
AcuI CTGAAG 1 cut(s) 788
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 2 cut(s) 182, 203
AflII CTTAAG 1 cut(s) 38
AgsI TTSAA 4 cut(s) 67, 202, 784, 873
AluBI AGCT 3 cut(s) 314, 377, 583
AluI AGCT 3 cut(s) 314, 377, 583
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 1 cut(s) 104
Ama87I CYCGRG 2 cut(s) 372, 443
Aor13HI TCCGGA 1 cut(s) 815
AoxI GGCC 1 cut(s) 915
ApeKI GCWGC 5 cut(s) 72, 238, 337, 386, 406
ApoI RAATTY 2 cut(s) 534, 881
ArsI GACNNNNNNTTYG 2 cut(s) 873, 905
Asp700I GAANNNNTTC 3 cut(s) 88, 129, 420
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 473
AvaI CYCGRG 2 cut(s) 372, 443
AvaII GGWCC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 861
BbvI GCAGC 5 cut(s) 59, 250, 324, 373, 418
BccI CCATC 3 cut(s) 224, 341, 752
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 513
BfrI CTTAAG 1 cut(s) 38
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 6 cut(s) 73, 239, 338, 387, 407, 915
BlsI GCNGC 6 cut(s) 74, 240, 339, 388, 408, 916
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 2 cut(s) 372, 443
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 175, 492
BmsI GCATC 3 cut(s) 496, 544, 599
BpiI GAAGAC 1 cut(s) 623
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 491
BsaJI CCNNGG 5 cut(s) 48, 177, 284, 444, 918
BsaWI WCCGGW 1 cut(s) 815
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 203
Bse1I ACTGG 1 cut(s) 318
BseAI TCCGGA 1 cut(s) 815
BseDI CCNNGG 5 cut(s) 48, 177, 284, 444, 918
BseGI GGATG 2 cut(s) 235, 590
BseLI CCNNNNNNNGG 2 cut(s) 182, 203
BseMII CTCAG 2 cut(s) 147, 833
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 5 cut(s) 59, 250, 324, 373, 418
BseYI CCCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 917
BsiHKAI GWGCWC 1 cut(s) 861
BsiHKCI CYCGRG 2 cut(s) 372, 443
BsiSI CCGG 2 cut(s) 410, 816
BslFI GGGAC 2 cut(s) 44, 159
BslI CCNNNNNNNGG 2 cut(s) 182, 203
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 44, 159
BsnI GGCC 1 cut(s) 917
BsoBI CYCGRG 2 cut(s) 372, 443
Bsp1286I GDGCHC 1 cut(s) 861
Bsp13I TCCGGA 1 cut(s) 815
Bsp143I GATC 1 cut(s) 864
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 4 cut(s) 105, 161, 183, 914
BspANI GGCC 1 cut(s) 917
BspCNI CTCAG 2 cut(s) 148, 834
BspEI TCCGGA 1 cut(s) 815
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 2 cut(s) 175, 492
BspTI CTTAAG 1 cut(s) 38
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 5 cut(s) 48, 177, 284, 444, 918
BssMI GATC 1 cut(s) 864
BssT1I CCWWGG 4 cut(s) 48, 177, 284, 918
Bst4CI ACNGT 3 cut(s) 130, 173, 262
BstAFI CTTAAG 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 6 cut(s) 156, 273, 402, 495, 621, 842
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 235, 590
BstKTI GATC 1 cut(s) 867
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 864
BstMWI GCNNNNNNNGC 2 cut(s) 102, 383
BstNSI RCATGY 1 cut(s) 344
BstV1I GCAGC 5 cut(s) 59, 250, 324, 373, 418
BstV2I GAAGAC 1 cut(s) 623
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 1 cut(s) 917
BtgI CCRYGG 1 cut(s) 284
BtsCI GGATG 2 cut(s) 235, 590
BtsIMutI CAGTG 2 cut(s) 20, 325
Cac8I GCNNGC 1 cut(s) 342
CciI TCATGA 1 cut(s) 805
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 2 cut(s) 498, 596
Csp6I GTAC 1 cut(s) 630
CviAII CATG 5 cut(s) 285, 341, 383, 503, 806
CviJI RGCY 9 cut(s) 215, 220, 314, 371, 377, 409, 583, 803, 917
CviKI_1 RGCY 9 cut(s) 215, 220, 314, 371, 377, 409, 583, 803, 917
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 6 cut(s) 156, 273, 402, 495, 621, 842
DpnI GATC 1 cut(s) 866
DpnII GATC 1 cut(s) 864
EaeI YGGCCR 1 cut(s) 915
EciI GGCGGA 2 cut(s) 176, 198
Eco130I CCWWGG 4 cut(s) 48, 177, 284, 918
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 788
Eco88I CYCGRG 2 cut(s) 372, 443
EcoT14I CCWWGG 4 cut(s) 48, 177, 284, 918
ErhI CCWWGG 4 cut(s) 48, 177, 284, 918
FaeI CATG 5 cut(s) 288, 344, 386, 506, 809
FaqI GGGAC 2 cut(s) 44, 159
FatI CATG 5 cut(s) 284, 340, 382, 502, 805
FauNDI CATATG 1 cut(s) 637
Fnu4HI GCNGC 6 cut(s) 73, 239, 338, 387, 407, 915
FokI GGATG 2 cut(s) 242, 577
Fsp4HI GCNGC 6 cut(s) 73, 239, 338, 387, 407, 915
FspBI CTAG 1 cut(s) 513
GluI GCNGC 6 cut(s) 73, 239, 338, 387, 407, 915
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 917
HapII CCGG 2 cut(s) 410, 816
HgaI GACGC 2 cut(s) 498, 596
Hin1II CATG 5 cut(s) 288, 344, 386, 506, 809
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 5 cut(s) 416, 605, 762, 812, 888
HpaII CCGG 2 cut(s) 410, 816
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 2 cut(s) 541, 666
Hpy188III TCNNGA 6 cut(s) 425, 470, 766, 806, 816, 892
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 1 cut(s) 793
HpyCH4III ACNGT 3 cut(s) 130, 173, 262
HpyCH4V TGCA 4 cut(s) 96, 303, 340, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 383
HpyF3I CTNAG 6 cut(s) 156, 273, 402, 495, 621, 842
Hsp92II CATG 5 cut(s) 288, 344, 386, 506, 809
Kpn2I TCCGGA 1 cut(s) 815
Kzo9I GATC 1 cut(s) 864
Lsp1109I GCAGC 5 cut(s) 59, 250, 324, 373, 418
LweI GCATC 3 cut(s) 496, 544, 599
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 4 cut(s) 59, 137, 498, 820
MalI GATC 1 cut(s) 866
MboI GATC 1 cut(s) 864
MboII GAAGA 6 cut(s) 425, 628, 685, 736, 781, 821
MhlI GDGCHC 1 cut(s) 861
MluCI AATT 4 cut(s) 534, 779, 868, 881
MlyI GAGTC 2 cut(s) 771, 897
MnlI CCTC 8 cut(s) 13, 151, 341, 439, 447, 481, 688, 768
MroI TCCGGA 1 cut(s) 815
MroXI GAANNNNTTC 3 cut(s) 88, 129, 420
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 345
MspCI CTTAAG 1 cut(s) 38
MspI CCGG 2 cut(s) 410, 816
MwoI GCNNNNNNNGC 2 cut(s) 102, 383
NcoI CCATGG 1 cut(s) 284
NdeI CATATG 1 cut(s) 637
NdeII GATC 1 cut(s) 864
NlaIII CATG 5 cut(s) 288, 344, 386, 506, 809
NlaIV GGNNCC 2 cut(s) 175, 492
NmuCI GTSAC 3 cut(s) 59, 137, 498
NspI RCATGY 1 cut(s) 344
PaeI GCATGC 1 cut(s) 344
PagI TCATGA 1 cut(s) 805
PdmI GAANNNNTTC 3 cut(s) 88, 129, 420
PfeI GAWTC 3 cut(s) 416, 605, 812
PkrI GCNGC 6 cut(s) 74, 240, 339, 388, 408, 916
PleI GAGTC 2 cut(s) 770, 896
PpsI GAGTC 2 cut(s) 770, 896
PspFI CCCAGC 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 175, 492
PspPI GGNCC 1 cut(s) 173
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 6 cut(s) 73, 239, 338, 387, 407, 915
Sau3AI GATC 1 cut(s) 864
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 2 cut(s) 771, 897
SduI GDGCHC 1 cut(s) 861
SetI ASST 9 cut(s) 39, 54, 199, 316, 379, 403, 439, 496, 585
SfaNI GCATC 3 cut(s) 496, 544, 599
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 2 cut(s) 38, 470
SmoI CTYRAG 2 cut(s) 38, 470
SphI GCATGC 1 cut(s) 344
Sse9I AATT 4 cut(s) 534, 779, 868, 881
SsiI CCGC 4 cut(s) 105, 161, 183, 914
SspMI CTAG 1 cut(s) 513
StyI CCWWGG 4 cut(s) 48, 177, 284, 918
TaaI ACNGT 3 cut(s) 130, 173, 262
TaqI TCGA 3 cut(s) 82, 752, 891
TasI AATT 4 cut(s) 534, 779, 868, 881
TatI WGTACW 1 cut(s) 629
TauI GCSGC 1 cut(s) 917
TfiI GAWTC 3 cut(s) 416, 605, 812
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 2 cut(s) 20, 325
TseFI GTSAC 3 cut(s) 59, 137, 498
TseI GCWGC 5 cut(s) 72, 238, 337, 386, 406
Tsp45I GTSAC 3 cut(s) 59, 137, 498
TspDTI ATGAA 5 cut(s) 618, 654, 812, 822, 896
TspRI CASTG 2 cut(s) 20, 325
Vha464I CTTAAG 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 534, 881
XceI RCATGY 1 cut(s) 344
XmnI GAANNNNTTC 3 cut(s) 88, 129, 420
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.