Rorug02G0041000

LYAR-type C2HC zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013475
Physical Location & Seq
Forward (+)
3215667 .. 3215981
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0041000.1

Sequence Viewer

Length: 315 bp
ATGGAGTGCTATATTGGAATGCTACGAATGGGACCGGTGATGACCATCAACAAGAGTACTACTGCCAATGGTGATAATGAATGCTATCAATTTCATGTTATTGAATTTGATCAGCATGATGATGTTCCTTATCCTAAACCTTATCGCCTTGGCTTGCATCGAGGACGTCTGCAGTTGGTGCGTAAGGTGTGTGATCAGGTCCGCGATACGACCGGAGCTAGGCTATTGATTTGGGAGTTGAATACAGAAGAACTAAAACAAATGGTGGTAGAAGGGGGTGGAAAACTGGGTCGGGAAGACGGGAACATAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-LYAR zf-met

Protein Analysis

104

Amino Acids

11.87

Weight (kDa)

5.88

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19385
fragaria_vesca FvH4_1g08060
malus_domestica MD02G1085300.v1.1 MD15G1212400.v1.1
prunus_persica Prupe.7G204300_v2.0.a1 Prupe.7G204300_v2.0.a1
pyrus_communis pycom02g06810 pycom15g18870
rosa_chinensis RchiOBHm_Chr2g0094111
rosa_laevigata RLG00000016456
rosa_multiflora Rmu_sc0026373.1_g000002 Rmu_ssc0000149.1_g000002
rosa_roxburghii Rroxscaffold_2G00147470
rosa_rugosa Rorug02G0041000
rosa_samantha Rh2AG088600 Rh2BG088700 Rh2CG091100 Rh2DG087700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 169
AccII CGCG 1 cut(s) 204
AciI CCGC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 219
AgeI ACCGGT 1 cut(s) 34
AgsI TTSAA 2 cut(s) 104, 241
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
ApoI RAATTY 1 cut(s) 104
AsiGI ACCGGT 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 32, 199
AsuHPI GGTGA 2 cut(s) 49, 83
AvaII GGWCC 2 cut(s) 32, 199
BbsI GAAGAC 1 cut(s) 303
BccI CCATC 1 cut(s) 53
BclI TGATCA 2 cut(s) 109, 193
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 170
BmcAI AGTACT 1 cut(s) 58
Bme18I GGWCC 2 cut(s) 32, 199
BmgT120I GGNCC 2 cut(s) 32, 199
BmiI GGNNCC 1 cut(s) 33
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 148
BsaWI WCCGGW 2 cut(s) 34, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 148
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 213
BshTI ACCGGT 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 213
BsiSI CCGG 2 cut(s) 35, 213
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 45
BsmI GAATGC 2 cut(s) 24, 86
Bsp143I GATC 2 cut(s) 109, 193
BspACI CCGC 1 cut(s) 202
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 2 cut(s) 109, 193
BssNI GRCGYC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 148
BstACI GRCGYC 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 155
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 2 cut(s) 112, 196
BstMBI GATC 2 cut(s) 109, 193
BstMCI CGRYCG 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 170
BstUI CGCG 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 155
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 32, 199
Csp6I GTAC 1 cut(s) 57
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 2 cut(s) 95, 116
CviJI RGCY 3 cut(s) 153, 218, 223
CviKI_1 RGCY 3 cut(s) 153, 218, 223
CviQI GTAC 1 cut(s) 57
DpnI GATC 2 cut(s) 111, 195
DpnII GATC 2 cut(s) 109, 193
Eco130I CCWWGG 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 32, 199
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 98, 119
FaiI YATR 4 cut(s) 12, 96, 117, 308
FaqI GGGAC 1 cut(s) 45
FatI CATG 2 cut(s) 94, 115
FbaI TGATCA 2 cut(s) 109, 193
FspBI CTAG 1 cut(s) 219
HapII CCGG 2 cut(s) 35, 213
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 2 cut(s) 98, 119
HpaII CCGG 2 cut(s) 35, 213
HphI GGTGA 2 cut(s) 49, 83
Hpy188III TCNNGA 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 157, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 166
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 2 cut(s) 98, 119
Ksp22I TGATCA 2 cut(s) 109, 193
Kzo9I GATC 2 cut(s) 109, 193
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 4 cut(s) 48, 182, 226, 272
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 166
MalI GATC 2 cut(s) 111, 195
MboI GATC 2 cut(s) 109, 193
MboII GAAGA 2 cut(s) 260, 308
MluCI AATT 2 cut(s) 89, 104
MnlI CCTC 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 120
MspI CCGG 2 cut(s) 35, 213
Mva1269I GAATGC 2 cut(s) 24, 86
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 2 cut(s) 109, 193
NlaIII CATG 2 cut(s) 98, 119
NlaIV GGNNCC 1 cut(s) 33
PctI GAATGC 2 cut(s) 24, 86
PinAI ACCGGT 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 2 cut(s) 32, 199
PstI CTGCAG 1 cut(s) 174
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 120
Sau3AI GATC 2 cut(s) 109, 193
Sau96I GGNCC 2 cut(s) 32, 199
ScaI AGTACT 1 cut(s) 58
SetI ASST 5 cut(s) 142, 169, 189, 201, 220
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 170
SinI GGWCC 2 cut(s) 32, 199
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 2 cut(s) 89, 104
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 89, 104
TatI WGTACW 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 83, 93
VpaK11BI GGWCC 2 cut(s) 32, 199
XapI RAATTY 1 cut(s) 104
XspI CTAG 1 cut(s) 219
ZraI GACGTC 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.