Rh2DG087700

LYAR-type C2HC zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013475
Physical Location & Seq
Reverse (-)
6801734 .. 6804144
2411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG087700.1

Sequence Viewer

Length: 771 bp
ATGGTGTGGTTTCAATGCGAGGACTGTGGAGACAATCTCAAGAAACCCAAGTTGCCTCACCACTTCAACACCTGCTCTGCTCGCAAGCTTTCGTGTATCGATTGTGGTGAGATGTTTGGGAGAGAAACTGTTCAGGGTCACACACAGTGTATTACTGAAGCGGAAAAATATGGTCCGAAGGGACAAGCCAAAGCTGTGAATGGTGGGGGAGCCAAGGCCAACAAGGATTCTAAGCAGCAAGCCGATTTTGATATAACTGTTGGGTTATCTGAGCGCCCGCCGTGGTTTTGTAGTCTTTGCAATACGAATGCGACCAGTAGGCAGACACTGATGCTCCATGCTGAAGGAAAGAAGCACAGGGGAAAGGCTCGAGCTATTCATGCTGCCAAGCAAAAGGCTATGCAGCCACAAGAATCTGCTCCAGATACAAAACCCCAACCTGAGGAAACTCCAAAAGGAATAGAAGAATCTAGATTGCAAGATGCATCAGGAGTTGATACTGTCCATAAAATTTCTGAAGCAGAGAATGGAAATTTGCTGTCAAAAAAAAAGAGAAAACTAGAAGAGTCCAAGAATGATGAATCAAGAAAAAAGACTAAGGATACTACATCAGGGGAAGTAGGCAATGAGAAAGTGATTCAGAATGGGAAAGCAGAAGCAAATGGAAAAGAGACCAAGTTGAAGAAAGATACAGAAGACTCCGAGAAAAAAATTAAGTGGAAGAAGTTGATTACATCAACATTAAAATCGGTTAGTATTCTGATAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-LYAR zf-met

Protein Analysis

256

Amino Acids

28.3

Weight (kDa)

9.18

Isoelectric Point (pI)

28.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-LYAR PF08790 30 - 57 2.1e-14 LYAR-type C2HC zinc finger
zf-met PF12874 95 - 119 9e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19385
fragaria_vesca FvH4_1g08060
malus_domestica MD02G1085300.v1.1 MD15G1212400.v1.1
prunus_persica Prupe.7G204300_v2.0.a1 Prupe.7G204300_v2.0.a1
pyrus_communis pycom02g06810 pycom15g18870
rosa_chinensis RchiOBHm_Chr2g0094111
rosa_laevigata RLG00000016456
rosa_multiflora Rmu_sc0026373.1_g000002 Rmu_ssc0000149.1_g000002
rosa_roxburghii Rroxscaffold_2G00147470
rosa_rugosa Rorug02G0041000
rosa_samantha Rh2AG088600 Rh2BG088700 Rh2CG091100 Rh2DG087700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 80
AciI CCGC 2 cut(s) 161, 278
AcsI RAATTY 2 cut(s) 510, 532
AcuI CTGAAG 3 cut(s) 177, 363, 537
AdeI CACNNNGTG 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 3 cut(s) 14, 67, 682
AluBI AGCT 3 cut(s) 88, 194, 374
AluI AGCT 3 cut(s) 88, 194, 374
Alw26I GTCTC 2 cut(s) 24, 665
AlwNI CAGNNNCTG 1 cut(s) 328
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 3 cut(s) 235, 383, 403
ApoI RAATTY 2 cut(s) 510, 532
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 50, 119
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 1 cut(s) 173
AxyI CCTNAGG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 702
BbvI GCAGC 3 cut(s) 247, 370, 415
BceAI ACGGC 1 cut(s) 265
BciVI GTATCC 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 24, 665
BfaI CTAG 2 cut(s) 471, 560
BfoI RGCGCY 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 80
BfuI GTATCC 1 cut(s) 595
BisI GCNGC 3 cut(s) 236, 384, 404
BlsI GCNGC 3 cut(s) 237, 385, 405
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 3 cut(s) 321, 472, 494
BpiI GAAGAC 1 cut(s) 702
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 2 cut(s) 213, 281
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 315
Bse21I CCTNAGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 631
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 213, 281
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 2 cut(s) 261, 432
BseNI ACTGG 1 cut(s) 315
BseXI GCAGC 3 cut(s) 247, 370, 415
BshFI GGCC 1 cut(s) 218
BshVI ATCGAT 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 24, 665
BsmFI GGGAC 1 cut(s) 195
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 665
BsoBI CYCGRG 1 cut(s) 369
BspACI CCGC 2 cut(s) 161, 278
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 262, 433
BspDI ATCGAT 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 631
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 2 cut(s) 213, 281
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 5 cut(s) 26, 130, 147, 259, 502
Bst6I CTCTTC 1 cut(s) 558
BstC8I GCNNGC 4 cut(s) 82, 86, 240, 278
BstDEI CTNAG 4 cut(s) 231, 270, 441, 597
BstDSI CCRYGG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstMAI GTCTC 2 cut(s) 24, 665
BstMWI GCNNNNNNNGC 2 cut(s) 81, 380
BstV1I GCAGC 3 cut(s) 247, 370, 415
BstV2I GAAGAC 1 cut(s) 702
Bsu15I ATCGAT 1 cut(s) 99
Bsu36I CCTNAGG 1 cut(s) 441
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 1 cut(s) 218
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 281
BtsIMutI CAGTG 2 cut(s) 152, 326
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 4 cut(s) 82, 86, 240, 278
CaiI CAGNNNCTG 1 cut(s) 328
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 1 cut(s) 99
CviAII CATG 2 cut(s) 338, 380
DdeI CTNAG 4 cut(s) 231, 270, 441, 597
DraIII CACNNNGTG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 3 cut(s) 177, 363, 537
Eco81I CCTNAGG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 341, 383
FaiI YATR 7 cut(s) 171, 254, 339, 381, 401, 507, 769
FaqI GGGAC 1 cut(s) 195
FatI CATG 2 cut(s) 337, 379
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 236, 384, 404
Fsp4HI GCNGC 3 cut(s) 236, 384, 404
FspBI CTAG 2 cut(s) 471, 560
GlaI GCGC 1 cut(s) 275
GluI GCNGC 3 cut(s) 236, 384, 404
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 1 cut(s) 218
HhaI GCGC 1 cut(s) 276
Hin1II CATG 2 cut(s) 341, 383
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 7 cut(s) 227, 413, 467, 566, 581, 637, 698
HphI GGTGA 2 cut(s) 50, 119
Hpy188I TCNGA 6 cut(s) 177, 271, 517, 642, 703, 762
Hpy188III TCNNGA 5 cut(s) 40, 422, 471, 489, 585
HpyAV CCTTC 2 cut(s) 172, 338
HpyCH4III ACNGT 5 cut(s) 26, 130, 147, 259, 502
HpyCH4V TGCA 4 cut(s) 300, 403, 478, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 380
HpyF3I CTNAG 4 cut(s) 231, 270, 441, 597
Hsp92II CATG 2 cut(s) 341, 383
HspAI GCGC 1 cut(s) 274
LmnI GCTCC 3 cut(s) 209, 339, 424
LpnPI CCDG 8 cut(s) 85, 119, 328, 343, 435, 453, 474, 597
Lsp1109I GCAGC 3 cut(s) 247, 370, 415
LweI GCATC 3 cut(s) 321, 472, 494
MaeI CTAG 2 cut(s) 471, 560
MaeIII GTNAC 1 cut(s) 137
MboII GAAGA 5 cut(s) 476, 575, 694, 707, 733
MluCI AATT 3 cut(s) 510, 532, 711
MlyI GAGTC 2 cut(s) 575, 692
MnlI CCTC 3 cut(s) 13, 66, 436
Mph1103I ATGCAT 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 2 cut(s) 714, 743
Mva1269I GAATGC 1 cut(s) 313
MwoI GCNNNNNNNGC 2 cut(s) 81, 380
NlaIII CATG 2 cut(s) 341, 383
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 487
PaeR7I CTCGAG 1 cut(s) 369
PaqCI CACCTGC 1 cut(s) 80
PctI GAATGC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 5 cut(s) 227, 413, 467, 581, 637
PkrI GCNGC 3 cut(s) 237, 385, 405
PleI GAGTC 2 cut(s) 574, 692
PpsI GAGTC 2 cut(s) 574, 692
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 369
PstNI CAGNNNCTG 1 cut(s) 328
SaqAI TTAA 2 cut(s) 714, 743
SatI GCNGC 3 cut(s) 236, 384, 404
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 2 cut(s) 575, 692
SetI ASST 5 cut(s) 74, 90, 196, 376, 442
SfaNI GCATC 3 cut(s) 321, 472, 494
Sfr274I CTCGAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 38, 369
SmoI CTYRAG 2 cut(s) 38, 369
Sse9I AATT 3 cut(s) 510, 532, 711
SsiI CCGC 2 cut(s) 161, 278
SspMI CTAG 2 cut(s) 471, 560
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 5 cut(s) 26, 130, 147, 259, 502
TaqI TCGA 2 cut(s) 99, 370
TasI AATT 3 cut(s) 510, 532, 711
TfiI GAWTC 5 cut(s) 227, 413, 467, 581, 637
Tru1I TTAA 2 cut(s) 714, 743
Tru9I TTAA 2 cut(s) 714, 743
TscAI CASTG 2 cut(s) 152, 333
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 3 cut(s) 235, 383, 403
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 368, 594
TspRI CASTG 2 cut(s) 152, 333
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 510, 532
XbaI TCTAGA 1 cut(s) 470
XhoI CTCGAG 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 2 cut(s) 471, 560
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.